TCONS_00002882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002882
Unique NameTCONS_00002882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002882 ID=TCONS_00002882|Name=TCONS_00002882|organism=Clytia hemisphaerica|type=transcript|length=878bp
CAGAAtagtgaagaaattttaaacaataaggcattgaaagtaaaatccta
GGTCCTGCGAGATACTTCGTTGAAAAGTAAATCTCCTNTTAAAAGTAAAA
TCCTAGGTCCTGCGAAATGCTTCGTTGAAAAGTAAATCTCCTTTGAATAC
GTTCCGCGTTTtccataaatttcacgttcctTCTCGCTCATGGAGGATCT
TTTATTCGCGATCGGCCTTTACTAACTTTACACGGCAACATGGCGGACGA
GAAGAAGGACAAGGCCAACCCTATGAAGGAAATCAGGATTCAAAAGTTAT
GTCTCAACATTTGTGTCGGAGAAAGTGGCGACAGACTTGTCCGTGCAGGA
AAAGTGTTGGAAGCCTTAACTGGACAAACTCCAGTTTTCTCAAAAGCACG
ATATACTGTCCGATCCTTTGGAATCCGTCGTAATGAAAAGATTGCTGTCC
ATTGTACCGTCAGAGGTGCCAAGGCTGAAGAAATCTTAGAAAAGGGGCTC
AAAGTCAAGGAATACGAATTACGGAGACGAAACTTCTCTGAAACCGGAAA
CTTTGGTTTTGGTATTGCAGAACACATTGATTTAGGAATCAAATACGATC
CCAGCATTGGTATTTATGGAATGGACTTTTATGTTGTCCTTGCACGACCA
GGATATAATGTTGCTTACAGAAGACGCAAGAAGGCTAAAGTTGGATTTCC
CCACCGTATCAGAAAAGCAGATTCAATGAAATGGTTTCAACACAAAtaCG
ACGGTATTCTGATGAAGTGAATTCTGTAAAATGGTGGTTGCTgtaataaa
tgaaaataattataaaattgaattcgttttttttttccttagtccaatac
atagTGAGCATTCTCATAATTTTCTGTG
Run BLAST on NCBI

protein sequence of TCONS_00002882-protein

>TCONS_00002882-protein ID=TCONS_00002882-protein|Name=TCONS_00002882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MADEKKDKANPMKEIRIQKLCLNICVGESGDRLVRAGKVLEALTGQTPVF
SKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVKEYELRRRNFS
ETGNFGFGIAEHIDLGIKYDPSIGIYGMDFYVVLARPGYNVAYRRRKKAK
VGFPHRIRKADSMKWFQHKYDGILMK
Run BLAST on NCBI

transcript from alignment at sc0000023:550731..556386-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002882 ID=TCONS_00002882|Name=TCONS_00002882|organism=Clytia hemisphaerica|type=transcript|length=5656bp|location=Sequence derived from alignment at sc0000023:550731..556386- (Clytia hemisphaerica)
CAGAATAGTGAAGAAATTTTAAACAATAAGGCATTGAAAGTAAAATCCTA
GGTCCTGCGAGATACTTCGTTGAAAAGTAAATCTCCTNTTAAAAGTAAAA
TCCTAGGTCCTGCGAAATGCTTCGTTGAAAAGTAAATCTCCTTTGAATAC
GTTCCGCGTTTTCCATAAATTTCACGTTCCTTCTCGCTCATGGAGGATCT
TTTATTCGCGATCGGCCTTTACTAACTTTACACGGCAACATGGCGGTAAG
GAATTTATCATTTTCACGTGGAAAACCGTTCTAGATATGCTAGTTGTGGC
TAGAAATCAACCTGCTTACATTGAGGATGTACAAAATTTATTTTCGAATC
TTTTTTTGCATCATTTTTGGTGAATATACTTGAAACTGAGGTACTTGTTG
TTGGTTTTGATAATACCTGTTAAACTGATATATCCTATGTATGATGGGAT
GTGGCATTGATTGATTTTTTACATCACCATTTCTCTATAGGACGAGAAGA
AGGACAAGGCCAACCCTATGAAGGAAATCAGGATTCAAAAGTTATGTCTC
AACATTTGTGTCGGAGAAAGTGGCGACAGACTTGTCCGTGCAGGAAAAGT
GTTGGAAGCCTTAACTGGACAAACTCCAGTTTTCTCAAAAGGTATGTTTG
GAGTCAAATCTGTATATGTCTAACATGTGGAATTGTTCCACCCTTAAAAA
TAAATTTATGGCTATATCTGAGAATATTGATCATAACATAAAATCTGTAC
TTTCTATCACAGCACGATATACTGTCCGATCCTTTGGAATCCGTCGTAAT
GAAAAGATTGCTGTCCATTGTACCGTCAGAGGTGCCAAGGCTGAAGAAAT
CTTAGAAAAGGGGCTCAAAGTCAAGGAATACGAATTACGGAGACGAAACT
TCTCTGAAACCGGAAACTTTGGTTTTGGTATTGCAGAACACATTGATTTA
GGAATCAAATACGATCCCAGCATTGGTATTTATGGAATGGACTTTTATGT
TGTCCTTGCACGACCAGGATATAATGTTGCTTACAGAAGACGCAAGAAGG
CTAAAGTTGGATTTCCCCACCGTATCAGAAAAGCAGATTCAATGAAATGG
TTTCAACACAAAGTAAGAAACTTTAATTGAATACTAATAATAGGCCATTC
TATTTCTCAATCATGCAGAGGTATTGTCAAACTCAAAGGAAGTTTGAGGC
CTTTATTTTACAAGGGGTCAGTCATTACAAGTATATTGCAGAGTACATTC
TGAAATTTTTAAAAATCTTCAGCTTATTTATTATTTATCTTTTCTGAGAA
TAGGGTGACAGAGTTAAGATGGTGATACTGACATTCGACATACAGTATAG
TGCTGAGGAGTCATTGGGATTTTAGTGTTTGGAGCAAAGACATGCAGAAA
CAGTGAAAAAACTAAATACTAATATTTTCAAAAAGTTATAATTATGTATC
ATTAAGGGGTCCTCAACAAAACGCATTGGGTTGATAAGCTTTGAACCCCC
TCGCCCTTATTGGCTGTAATTTTTAAAACAAAGTTTAGCCTTTTCAAAAT
CATGATTTTTTTGCAATCATGTCCCTTATCACGCTGATCTTGCCTATACA
CCTGCCATCACTGTTGAGTGTTTGTCTATCTGTACCCACATTGATATTGT
TAATCGAAATGAAAATTAGAATGAGATGATTAATTTGCAACAATTTTGAA
AGAAATAGTAGCGCGCTGGTCAATAAAAGAGAAGTTTTTTTTTTATCGAA
AAACTTAAACTGTGCTTTTAAAGTTGGGAATTTGTGCATGATGGTAGAAG
CAAGTGAAATTTCGTGCTTTCAGTGGAGTTTGAAAAAGGCTGAAAAAGAT
TCATGGTTTCCCCCCCCCCCCCCTTTCTTAAAATAAGGGGTGTAAAAAAA
TTGCCATTTGAAAAAGGGGATTTTTTTATTTTATTTTTTTAAAGAAGGGG
GAGAAATACAAACTTATGATGAGCAGAAACTTTTGTGAGGTCAAAAAATT
GCAAAATTTGTGTCATTTACTTTGCAATTTGATGAAAAAAAATTCTTTGT
GATCAATAACTTTTGTGAATCAGGATATTAAAATTTTCACACAGAAAAAA
ATTGGCTGAGAGGGACAAATACTTCTTCAATTGTATTGCAATGTTGGTCT
TTTTGAGTCGTGAGGCTATAAAAAATTTCACAATAAAGGTACTTGGGGGG
AGCTAAAATCTCATTCAGGGTGGCCACTAGTCCTGGAAAGTCCTTGAAAG
TCCTGGATTTTGTTTTAGTCCTGGAAAAGCGTCCTGGAAATTCAGAAAAT
TGATTAAAGTCCTGGAAAAGTCCTGGAATATTTTTTCTTGTTAGTCCCGG
AATTTAACCTTTCTCTATAAGCAATCAAGCGTGAGGGAATTTGTATTCTG
ATCAGATATTTATTGCTTTTATTTTCTGTATTCTAATATCTGTGTTTGCA
GAAGTCATAAATATTGTCAAAATCGTCAAACATGATGGCATACTCTCGGG
TACCAATGGATGGGGTTTGGAATTAAGCGGTTGGAAAAAATCTCAAAATC
TAATCAGGGAGGTTGGAATTAAAATGCCCTGGGTGGAAAACTTTGGAAAA
GCAGGCTAACACAGAAGAATTAGGGCAAAAGAGGGAACTATCAAAAACAT
TTTCCCAAAACTTAATTAGCGGGAGGTGGGGTGGAATAAGAAAGGGAAAG
GGGCGCCAAAACTTTTTTGTTAAATCTTATTAAAAGTTGGACTTTGTGCG
TCTTAAACTGCGCCCTGAAATCAATTTTGGTGAAAAATTTTTCAAATGTA
GTTTTGCAATTTTTTTTGACAANATCTTGTTGCGTTTCAAAGAGATAATC
CTATGTTTCTGTTTCTAAAAAAGTGATATTTTCCAATTGTTGATGAAAAC
GATGATGCACCACTAAAATTGTTGAAATTGGCTTTTTGGGGGGTTTGACA
ATCTAGCAGTTTCGAATGGTAATCTAACTGTGCGCCTCATGACCAATACA
CTCTTCTCGAGATGCATAAATTTATTGTTGTCCTCGTTTTCAAACAGATC
TCATTGCTATAAAATTACATATTCACAATGATAATTGTGTTGTTTACACC
TCATAAAACATTTTGAATTTCAAGTACTTTTGTTTTAGAGTTCATGTTTG
CCTTTTGGGAATTTAAATTGGTCTAAATGTATAATTTCATAGCAATGAAA
TCTGTTTGAAAACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGTG
TATTAGCTGAATGCAATTTAAAACATATAACCCAATTTTTTTCGCTCGAA
AAGTAATTCGAAATCTGTATTGGTTACTTTAAAAACAAAAATACAAGAGT
AATGTACAACGGTTAACTCTTACTTTACAAAATCTTTGTCACCTAAAAAT
ATCCTAAACAAGTATAGCAATTTGTAAGATTCTTTTTAAAGCTATGTGAT
TGTCTATGCAAATCTTCTTTATTGGCCCAGCTAGCTTTAGCGTAGTGTGT
AACAATTTACTAGGTGATACGCGTTTTATTTCATATTGTGAAAAATTTGA
TTGGCTCTTTTAGAACACGATTGGCAGAATAAAAACAATTACAATTGTCT
TTATTGGTTTTAGGTTCAAATCCTCTCTGTTACTTAAGTCTTGTTCAGTT
CATATTTTTATTCGCTGGGCCTTCGTACCCTCTGGGCTTCTTGTCTTCTT
GGTTAAAATCAAATTGGCCCATTCTCTATTTCGTTGCTTTGGAGCAAGTT
AGAAAAAGCTTTGCACCTCATTTTTTCGTTAATATTTTTCAAATACATAG
CTCAGTTCTGGAAGAAAATGCTTTTCTTTTAGGATAAAAAGTCCTGGAAA
AGTTTAAAAACATCCTGGAAAAGTCCTTGAAAAGTCCTGGGATTTGACTT
GTTTTTTTGAGTGGTCACCCTGTCATTACTTAACGTGGGGGCTAAAATAA
TTCAGCTTAATAGTTCGCTTCAATTACTCAAATTGAAGCTCATGAATCTG
AAAAACTTTCCCCTGTGGCGCAATATTTTTATAGAAAATTAAGCAAGATG
CTTTGATTTATCTTTAGACAAAGCAATACATTTTTCAGGGGTGTGGGGAA
AGTTTTTCAATGCCTATGTTTGGTTTGAAAATGTATTTTGATTCTAGAAA
ACAGCTCAGATATGTCTATTGCATGGGACATTCGAACAACATATGTTCAA
CACATCTCCAGTGATATGATAGAAACATCAGTATTCTTAGCAAACTTGTA
ATTTTTAGCAGAGAGGCTAAGCAGTTTGCAGCTTACCCAGGGTTACCTCT
GTCAGGCCATCTTTCATGCCCTTTTAGCGTCCATTCTGTCCCTCCTTAAA
TCACTAGAATTTTGGTAAAAACAACCTTGTAGTGGAAAAACAATAGTAAA
AGTGTCTCTCTTGGCCACCAACAGACCCTGTCCTGCCTTTCTGAAATATG
GCCTGTCTGTCTTTCAACCTCATTTGTAACAAAGTGTAATTTAGGTAACT
AATACAAAGTGTGCAGCTAAAGATAGTGATAGATAGATAAATAAATAGAT
ACATAGATTTGTAATACCGGAATTTCAAGTGTTTATTATAAACCTGTTGT
TTCTGGGGTGAATAGGTGGTCTTTTTTATAAAACTTTAACCATAGACCTG
TGAAGCTTGTAAGATTTGTTACCAATTGAGGTTGATTTTTGAGAATCTTT
TTTAGGTACTCTGTTTCCTTTGAGGATTTTTTTTTACAGTTAGGCTAAAG
TTCGGGGTATGCGCATTGTTTTTTTGTTGTTTTTTTTATTTTGTTTTTTC
AGCTTAAATGCATGCACCTTGAGTTTTCTATGAAATAGTAGAGTTTCAAA
ACCTAAGCCAATCAGCTCTGTTTTATTATTATTTTATCTATTAATCCCAG
TTTTAAATCCTTTTGATATTCAAATTTCTAGTGGGTCAGTAGTGGCTAGT
GGGTTAGTAGTGGCTGCTTTAAAGTGTGTCTATAGGCTAAGAGTATTTTA
ACTTAGGAATCTTGGCAGATTTCTAATAGAAATTTAGCTATTAGTTACAA
AAGAATTAGTTCCATTTTACTAAGACTATTTAAAGAATACTTGAATACTA
GCCATTTGGAAATTTACATTTATTAAATATTAAATGTCTGATATGATAAA
AAATTGGAAGTGTTTTTAACTTGGAATCAATTATCTTTACCAATTACCTC
ATTAAACAACAAATGTGCGAAAATTGTCCTCACCTGTTAACACGTAATTT
TTGACCTTCATAATTTGTCCTAAATGTGGAAATATTTCGTTTCCTATGTG
TTGTATTTTGTAGAAGTGGATCATTAAAGCCACTATCTAATTATTCTTTC
GTTTTTCTATTTTTTAGTACGACGGTATTCTGATGAAGTGAATTCTGTAA
AATGGTGGTTGCTGTAATAAATGAAAATAATTATAAAATTGAATTCGTTT
TTTTTTTCCTTAGTCCAATACATCTTTTTTTTTTATAAGCAAGTGTCTGC
CCCTACATCAGGCTCGCATTATGCTTAGCAATTTACTGTTCTCAAACAAT
AGAGCCATTGTTTAGGTACCAAAAACTGAGCCTGCATATGTTTATAAACG
TTATGCTTATAAAAGAAAAAACATTTACATAGTGAGCATTCTCATAATTT
TCTGTG

Coding sequence (CDS) from alignment at sc0000023:550731..556386-

>TCONS_00002882 ID=TCONS_00002882|Name=TCONS_00002882|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0000023:550731..556386- (Clytia hemisphaerica)
TACGACGGTATTCTGATGAAGTGACACGATATACTGTCCGATCCTTTGGA
ATCCGTCGTAATGAAAAGATTGCTGTCCATTGTACCGTCAGAGGTGCCAA
GGCTGAAGAAATCTTAGAAAAGGGGCTCAAAGTCAAGGAATACGAATTAC
GGAGACGAAACTTCTCTGAAACCGGAAACTTTGGTTTTGGTATTGCAGAA
CACATTGATTTAGGAATCAAATACGATCCCAGCATTGGTATTTATGGAAT
GGACTTTTATGTTGTCCTTGCACGACCAGGATATAATGTTGCTTACAGAA
GACGCAAGAAGGCTAAAGTTGGATTTCCCCACCGTATCAGAAAAGCAGAT
TCAATGAAATGGTTTCAACACAAAGACGAGAAGAAGGACAAGGCCAACCC
TATGAAGGAAATCAGGATTCAAAAGTTATGTCTCAACATTTGTGTCGGAG
AAAGTGGCGACAGACTTGTCCGTGCAGGAAAAGTGTTGGAAGCCTTAACT
GGACAAACTCCAGTTTTCTCAAAAGATGGCGTACGACGGTATTCTGATGA
AGTGACACGATATACTGTCCGATCCTTTGGAATCCGTCGTAATGAAAAGA
TTGCTGTCCATTGTACCGTCAGAGGTGCCAAGGCTGAAGAAATCTTAGAA
AAGGGGCTCAAAGTCAAGGAATACGAATTACGGAGACGAAACTTCTCTGA
AACCGGAAACTTTGGTTTTGGTATTGCAGAACACATTGATTTAGGAATCA
AATACGATCCCAGCATTGGTATTTATGGAATGGACTTTTATGTTGTCCTT
GCACGACCAGGATATAATGTTGCTTACAGAAGACGCAAGAAGGCTAAAGT
TGGATTTCCCCACCGTATCAGAAAAGCAGATTCAATGAAATGGTTTCAAC
ACAAAGACGAGAAGAAGGACAAGGCCAACCCTATGAAGGAAATCAGGATT
CAAAAGTTATGTCTCAACATTTGTGTCGGAGAAAGTGGCGACAGACTTGT
CCGTGCAGGAAAAGTGTTGGAAGCCTTAACTGGACAAACTCCAGTTTTCT
CAAAAGATGGCGTACGACGGTATTCTGATGAAGTGACACGATATACTGTC
CGATCCTTTGGAATCCGTCGTAATGAAAAGATTGCTGTCCATTGTACCGT
CAGAGGTGCCAAGGCTGAAGAAATCTTAGAAAAGGGGCTCAAAGTCAAGG
AATACGAATTACGGAGACGAAACTTCTCTGAAACCGGAAACTTTGGTTTT
GGTATTGCAGAACACATTGATTTAGGAATCAAATACGATCCCAGCATTGG
TATTTATGGAATGGACTTTTATGTTGTCCTTGCACGACCAGGATATAATG
TTGCTTACAGAAGACGCAAGAAGGCTAAAGTTGGATTTCCCCACCGTATC
AGAAAAGCAGATTCAATGAAATGGTTTCAACACAAAGACGAGAAGAAGGA
CAAGGCCAACCCTATGAAGGAAATCAGGATTCAAAAGTTATGTCTCAACA
TTTGTGTCGGAGAAAGTGGCGACAGACTTGTCCGTGCAGGAAAAGTGTTG
GAAGCCTTAACTGGACAAACTCCAGTTTTCTCAAAAGATGGCGTACGACG
GTATTCTGATGAAGTGACACGATATACTGTCCGATCCTTTGGAATCCGTC
GTAATGAAAAGATTGCTGTCCATTGTACCGTCAGAGGTGCCAAGGCTGAA
GAAATCTTAGAAAAGGGGCTCAAAGTCAAGGAATACGAATTACGGAGACG
AAACTTCTCTGAAACCGGAAACTTTGGTTTTGGTATTGCAGAACACATTG
ATTTAGGAATCAAATACGATCCCAGCATTGGTATTTATGGAATGGACTTT
TATGTTGTCCTTGCACGACCAGGATATAATGTTGCTTACAGAAGACGCAA
GAAGGCTAAAGTTGGATTTCCCCACCGTATCAGAAAAGCAGATTCAATGA
AATGGTTTCAACACAAAGACGAGAAGAAGGACAAGGCCAACCCTATGAAG
GAAATCAGGATTCAAAAGTTATGTCTCAACATTTGTGTCGGAGAAAGTGG
CGACAGACTTGTCCGTGCAGGAAAAGTGTTGGAAGCCTTAACTGGACAAA
CTCCAGTTTTCTCAAAAGATGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001565XLOC_001565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002882-exon-sc0000023-1575043694:556142..556386TCONS_00002882-exon-sc0000023-1575043694:556142..556386Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1575043694:555746..555896TCONS_00002882-exon-sc0000023-1575043694:555746..555896Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1575043694:555275..555624TCONS_00002882-exon-sc0000023-1575043694:555275..555624Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1575043694:550916..551019TCONS_00002882-exon-sc0000023-1575043694:550916..551019Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1575043694:550731..550758TCONS_00002882-exon-sc0000023-1575043694:550731..550758Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1510915933:556142..556386TCONS_00002882-exon-sc0000023-1510915933:556142..556386Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1510915933:555746..555896TCONS_00002882-exon-sc0000023-1510915933:555746..555896Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1510915933:555275..555624TCONS_00002882-exon-sc0000023-1510915933:555275..555624Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1510915933:550916..551019TCONS_00002882-exon-sc0000023-1510915933:550916..551019Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1510915933:550731..550758TCONS_00002882-exon-sc0000023-1510915933:550731..550758Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1491911889:556142..556386TCONS_00002882-exon-sc0000023-1491911889:556142..556386Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1491911889:555746..555896TCONS_00002882-exon-sc0000023-1491911889:555746..555896Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1491911889:555275..555624TCONS_00002882-exon-sc0000023-1491911889:555275..555624Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1491911889:550916..551019TCONS_00002882-exon-sc0000023-1491911889:550916..551019Clytia hemisphaericaexon
TCONS_00002882-exon-sc0000023-1491911889:550731..550758TCONS_00002882-exon-sc0000023-1491911889:550731..550758Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002882-proteinTCONS_00002882-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:550731..556386 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2726.35	2767.2	2749.09	2899.82	1014.47	903.962	1343.56	1413.23	2474.8	2292.34	2583.13	3103.72	3589.91	3342.26	3690.53	3604.66	3772.74	3805.01	1722.35	1935.65	3788.78	3710.53	3228.89	2978.74	1776.9	1928.43	3652.38	3641.66	2633	2748.13
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022803Ribosomal_L5_domain
IPR031310Ribosomal_L5_N
IPR002132Ribosomal_L5
IPR031309Ribosomal_L5_C
IPR020929Ribosomal_L5_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00002882 vs. Swiss-Prot (Human)
Match: RL11 (60S ribosomal protein L11 OS=Homo sapiens GN=RPL11 PE=1 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 5.099e-99
Identity = 135/175 (77.14%), Postives = 157/175 (89.71%), Query Frame = 3 
Query:  240 MADEKKDKANPMKEIRIQKLCLNICVGESGDRLVRAGKVLEALTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVKEYELRRRNFSETGNFGFGIAEHIDLGIKYDPSIGIYGMDFYVVLARPGYNVAYRRRKKAKVGFPHRIRKADSMKWFQHKYDGILM 764
            MA ++ +K NPM+E+RI+KLCLNICVGESGDRL RA KVLE LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKV+EYELR+ NFS+TGNFGFGI EHIDLGIKYDPSIGIYG+DFYVVL RPG+++A ++R+   +G  HRI K ++M+WFQ KYDGI++
Sbjct:    1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
The following BLAST results are available for this feature:
BLAST of TCONS_00002882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL115.099e-9977.1460S ribosomal protein L11 OS=Homo sapiens GN=RPL11... [more]
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