TCONS_00002881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002881
Unique NameTCONS_00002881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002881 ID=TCONS_00002881|Name=TCONS_00002881|organism=Clytia hemisphaerica|type=transcript|length=882bp
TTTGAATACGTTCCGCGTTTtccataaatttcacgttcctTCTCGCTCAT
GGAGGATCTTTTATTCGCGATCGGCCTTTACTAACTTTACACGGCAACAT
GGCGGTAAGGAATTTATCATTTTCACGTGGAAAACCGTTCTAGATATGCT
AGTTGTGGCTAGAAATCAACCTGCTTACATTGAGGAtgtacaaaatttat
tttcgaatctttttttGCATCATTTTTGGTGAATATACTTGAAACTGAGG
ACGAGAAGAAGGACAAGGCCAACCCTATGAAGGAAATCAGGATTCAAAAG
TTATGTCTCAACATTTGTGTCGGAGAAAGTGGCGACAGACTTGTCCGTGC
AGGAAAAGTGTTGGAAGCCTTAACTGGACAAACTCCAGTTTTCTCAAAAG
CACGATATACTGTCCGATCCTTTGGAATCCGTCGTAATGAAAAGATTGCT
GTCCATTGTACCGTCAGAGGTGCCAAGGCTGAAGAAATCTTAGAAAAGGG
GCTCAAAGTCAAGGAATACGAATTACGGAGACGAAACTTCTCTGAAACCG
GAAACTTTGGTTTTGGTATTGCAGAACACATTGATTTAGGAATCAAATAC
GATCCCAGCATTGGTATTTATGGAATGGACTTTTATGTTGTCCTTGCACG
ACCAGGATATAATGTTGCTTACAGAAGACGCAAGAAGGCTAAAGTTGGAT
TTCCCCACCGTATCAGAAAAGCAGATTCAATGAAATGGTTTCAACACAAA
taCGACGGTATTCTGATGAAGTGAATTCTGTAAAATGGTGGTTGCTgtaa
taaatgaaaataattataaaattgaattcgttttttttttccttagtcca
atacatagTGAGCATTCTCATAATTTTCTGTG
Run BLAST on NCBI

transcript from alignment at sc0000023:550731..556245-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002881 ID=TCONS_00002881|Name=TCONS_00002881|organism=Clytia hemisphaerica|type=transcript|length=5515bp|location=Sequence derived from alignment at sc0000023:550731..556245- (Clytia hemisphaerica)
TTTGAATACGTTCCGCGTTTTCCATAAATTTCACGTTCCTTCTCGCTCAT
GGAGGATCTTTTATTCGCGATCGGCCTTTACTAACTTTACACGGCAACAT
GGCGGTAAGGAATTTATCATTTTCACGTGGAAAACCGTTCTAGATATGCT
AGTTGTGGCTAGAAATCAACCTGCTTACATTGAGGATGTACAAAATTTAT
TTTCGAATCTTTTTTTGCATCATTTTTGGTGAATATACTTGAAACTGAGG
TACTTGTTGTTGGTTTTGATAATACCTGTTAAACTGATATATCCTATGTA
TGATGGGATGTGGCATTGATTGATTTTTTACATCACCATTTCTCTATAGG
ACGAGAAGAAGGACAAGGCCAACCCTATGAAGGAAATCAGGATTCAAAAG
TTATGTCTCAACATTTGTGTCGGAGAAAGTGGCGACAGACTTGTCCGTGC
AGGAAAAGTGTTGGAAGCCTTAACTGGACAAACTCCAGTTTTCTCAAAAG
GTATGTTTGGAGTCAAATCTGTATATGTCTAACATGTGGAATTGTTCCAC
CCTTAAAAATAAATTTATGGCTATATCTGAGAATATTGATCATAACATAA
AATCTGTACTTTCTATCACAGCACGATATACTGTCCGATCCTTTGGAATC
CGTCGTAATGAAAAGATTGCTGTCCATTGTACCGTCAGAGGTGCCAAGGC
TGAAGAAATCTTAGAAAAGGGGCTCAAAGTCAAGGAATACGAATTACGGA
GACGAAACTTCTCTGAAACCGGAAACTTTGGTTTTGGTATTGCAGAACAC
ATTGATTTAGGAATCAAATACGATCCCAGCATTGGTATTTATGGAATGGA
CTTTTATGTTGTCCTTGCACGACCAGGATATAATGTTGCTTACAGAAGAC
GCAAGAAGGCTAAAGTTGGATTTCCCCACCGTATCAGAAAAGCAGATTCA
ATGAAATGGTTTCAACACAAAGTAAGAAACTTTAATTGAATACTAATAAT
AGGCCATTCTATTTCTCAATCATGCAGAGGTATTGTCAAACTCAAAGGAA
GTTTGAGGCCTTTATTTTACAAGGGGTCAGTCATTACAAGTATATTGCAG
AGTACATTCTGAAATTTTTAAAAATCTTCAGCTTATTTATTATTTATCTT
TTCTGAGAATAGGGTGACAGAGTTAAGATGGTGATACTGACATTCGACAT
ACAGTATAGTGCTGAGGAGTCATTGGGATTTTAGTGTTTGGAGCAAAGAC
ATGCAGAAACAGTGAAAAAACTAAATACTAATATTTTCAAAAAGTTATAA
TTATGTATCATTAAGGGGTCCTCAACAAAACGCATTGGGTTGATAAGCTT
TGAACCCCCTCGCCCTTATTGGCTGTAATTTTTAAAACAAAGTTTAGCCT
TTTCAAAATCATGATTTTTTTGCAATCATGTCCCTTATCACGCTGATCTT
GCCTATACACCTGCCATCACTGTTGAGTGTTTGTCTATCTGTACCCACAT
TGATATTGTTAATCGAAATGAAAATTAGAATGAGATGATTAATTTGCAAC
AATTTTGAAAGAAATAGTAGCGCGCTGGTCAATAAAAGAGAAGTTTTTTT
TTTATCGAAAAACTTAAACTGTGCTTTTAAAGTTGGGAATTTGTGCATGA
TGGTAGAAGCAAGTGAAATTTCGTGCTTTCAGTGGAGTTTGAAAAAGGCT
GAAAAAGATTCATGGTTTCCCCCCCCCCCCCCTTTCTTAAAATAAGGGGT
GTAAAAAAATTGCCATTTGAAAAAGGGGATTTTTTTATTTTATTTTTTTA
AAGAAGGGGGAGAAATACAAACTTATGATGAGCAGAAACTTTTGTGAGGT
CAAAAAATTGCAAAATTTGTGTCATTTACTTTGCAATTTGATGAAAAAAA
ATTCTTTGTGATCAATAACTTTTGTGAATCAGGATATTAAAATTTTCACA
CAGAAAAAAATTGGCTGAGAGGGACAAATACTTCTTCAATTGTATTGCAA
TGTTGGTCTTTTTGAGTCGTGAGGCTATAAAAAATTTCACAATAAAGGTA
CTTGGGGGGAGCTAAAATCTCATTCAGGGTGGCCACTAGTCCTGGAAAGT
CCTTGAAAGTCCTGGATTTTGTTTTAGTCCTGGAAAAGCGTCCTGGAAAT
TCAGAAAATTGATTAAAGTCCTGGAAAAGTCCTGGAATATTTTTTCTTGT
TAGTCCCGGAATTTAACCTTTCTCTATAAGCAATCAAGCGTGAGGGAATT
TGTATTCTGATCAGATATTTATTGCTTTTATTTTCTGTATTCTAATATCT
GTGTTTGCAGAAGTCATAAATATTGTCAAAATCGTCAAACATGATGGCAT
ACTCTCGGGTACCAATGGATGGGGTTTGGAATTAAGCGGTTGGAAAAAAT
CTCAAAATCTAATCAGGGAGGTTGGAATTAAAATGCCCTGGGTGGAAAAC
TTTGGAAAAGCAGGCTAACACAGAAGAATTAGGGCAAAAGAGGGAACTAT
CAAAAACATTTTCCCAAAACTTAATTAGCGGGAGGTGGGGTGGAATAAGA
AAGGGAAAGGGGCGCCAAAACTTTTTTGTTAAATCTTATTAAAAGTTGGA
CTTTGTGCGTCTTAAACTGCGCCCTGAAATCAATTTTGGTGAAAAATTTT
TCAAATGTAGTTTTGCAATTTTTTTTGACAANATCTTGTTGCGTTTCAAA
GAGATAATCCTATGTTTCTGTTTCTAAAAAAGTGATATTTTCCAATTGTT
GATGAAAACGATGATGCACCACTAAAATTGTTGAAATTGGCTTTTTGGGG
GGTTTGACAATCTAGCAGTTTCGAATGGTAATCTAACTGTGCGCCTCATG
ACCAATACACTCTTCTCGAGATGCATAAATTTATTGTTGTCCTCGTTTTC
AAACAGATCTCATTGCTATAAAATTACATATTCACAATGATAATTGTGTT
GTTTACACCTCATAAAACATTTTGAATTTCAAGTACTTTTGTTTTAGAGT
TCATGTTTGCCTTTTGGGAATTTAAATTGGTCTAAATGTATAATTTCATA
GCAATGAAATCTGTTTGAAAACGAGGACAACAATAAATTTATGCATCTCG
AGAAGAGTGTATTAGCTGAATGCAATTTAAAACATATAACCCAATTTTTT
TCGCTCGAAAAGTAATTCGAAATCTGTATTGGTTACTTTAAAAACAAAAA
TACAAGAGTAATGTACAACGGTTAACTCTTACTTTACAAAATCTTTGTCA
CCTAAAAATATCCTAAACAAGTATAGCAATTTGTAAGATTCTTTTTAAAG
CTATGTGATTGTCTATGCAAATCTTCTTTATTGGCCCAGCTAGCTTTAGC
GTAGTGTGTAACAATTTACTAGGTGATACGCGTTTTATTTCATATTGTGA
AAAATTTGATTGGCTCTTTTAGAACACGATTGGCAGAATAAAAACAATTA
CAATTGTCTTTATTGGTTTTAGGTTCAAATCCTCTCTGTTACTTAAGTCT
TGTTCAGTTCATATTTTTATTCGCTGGGCCTTCGTACCCTCTGGGCTTCT
TGTCTTCTTGGTTAAAATCAAATTGGCCCATTCTCTATTTCGTTGCTTTG
GAGCAAGTTAGAAAAAGCTTTGCACCTCATTTTTTCGTTAATATTTTTCA
AATACATAGCTCAGTTCTGGAAGAAAATGCTTTTCTTTTAGGATAAAAAG
TCCTGGAAAAGTTTAAAAACATCCTGGAAAAGTCCTTGAAAAGTCCTGGG
ATTTGACTTGTTTTTTTGAGTGGTCACCCTGTCATTACTTAACGTGGGGG
CTAAAATAATTCAGCTTAATAGTTCGCTTCAATTACTCAAATTGAAGCTC
ATGAATCTGAAAAACTTTCCCCTGTGGCGCAATATTTTTATAGAAAATTA
AGCAAGATGCTTTGATTTATCTTTAGACAAAGCAATACATTTTTCAGGGG
TGTGGGGAAAGTTTTTCAATGCCTATGTTTGGTTTGAAAATGTATTTTGA
TTCTAGAAAACAGCTCAGATATGTCTATTGCATGGGACATTCGAACAACA
TATGTTCAACACATCTCCAGTGATATGATAGAAACATCAGTATTCTTAGC
AAACTTGTAATTTTTAGCAGAGAGGCTAAGCAGTTTGCAGCTTACCCAGG
GTTACCTCTGTCAGGCCATCTTTCATGCCCTTTTAGCGTCCATTCTGTCC
CTCCTTAAATCACTAGAATTTTGGTAAAAACAACCTTGTAGTGGAAAAAC
AATAGTAAAAGTGTCTCTCTTGGCCACCAACAGACCCTGTCCTGCCTTTC
TGAAATATGGCCTGTCTGTCTTTCAACCTCATTTGTAACAAAGTGTAATT
TAGGTAACTAATACAAAGTGTGCAGCTAAAGATAGTGATAGATAGATAAA
TAAATAGATACATAGATTTGTAATACCGGAATTTCAAGTGTTTATTATAA
ACCTGTTGTTTCTGGGGTGAATAGGTGGTCTTTTTTATAAAACTTTAACC
ATAGACCTGTGAAGCTTGTAAGATTTGTTACCAATTGAGGTTGATTTTTG
AGAATCTTTTTTAGGTACTCTGTTTCCTTTGAGGATTTTTTTTTACAGTT
AGGCTAAAGTTCGGGGTATGCGCATTGTTTTTTTGTTGTTTTTTTTATTT
TGTTTTTTCAGCTTAAATGCATGCACCTTGAGTTTTCTATGAAATAGTAG
AGTTTCAAAACCTAAGCCAATCAGCTCTGTTTTATTATTATTTTATCTAT
TAATCCCAGTTTTAAATCCTTTTGATATTCAAATTTCTAGTGGGTCAGTA
GTGGCTAGTGGGTTAGTAGTGGCTGCTTTAAAGTGTGTCTATAGGCTAAG
AGTATTTTAACTTAGGAATCTTGGCAGATTTCTAATAGAAATTTAGCTAT
TAGTTACAAAAGAATTAGTTCCATTTTACTAAGACTATTTAAAGAATACT
TGAATACTAGCCATTTGGAAATTTACATTTATTAAATATTAAATGTCTGA
TATGATAAAAAATTGGAAGTGTTTTTAACTTGGAATCAATTATCTTTACC
AATTACCTCATTAAACAACAAATGTGCGAAAATTGTCCTCACCTGTTAAC
ACGTAATTTTTGACCTTCATAATTTGTCCTAAATGTGGAAATATTTCGTT
TCCTATGTGTTGTATTTTGTAGAAGTGGATCATTAAAGCCACTATCTAAT
TATTCTTTCGTTTTTCTATTTTTTAGTACGACGGTATTCTGATGAAGTGA
ATTCTGTAAAATGGTGGTTGCTGTAATAAATGAAAATAATTATAAAATTG
AATTCGTTTTTTTTTTCCTTAGTCCAATACATCTTTTTTTTTTATAAGCA
AGTGTCTGCCCCTACATCAGGCTCGCATTATGCTTAGCAATTTACTGTTC
TCAAACAATAGAGCCATTGTTTAGGTACCAAAAACTGAGCCTGCATATGT
TTATAAACGTTATGCTTATAAAAGAAAAAACATTTACATAGTGAGCATTC
TCATAATTTTCTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001565XLOC_001565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002881-exon-sc0000023-1575043694:555997..556245TCONS_00002881-exon-sc0000023-1575043694:555997..556245Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1575043694:555746..555896TCONS_00002881-exon-sc0000023-1575043694:555746..555896Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1575043694:555275..555624TCONS_00002881-exon-sc0000023-1575043694:555275..555624Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1575043694:550916..551019TCONS_00002881-exon-sc0000023-1575043694:550916..551019Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1575043694:550731..550758TCONS_00002881-exon-sc0000023-1575043694:550731..550758Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1510915933:555997..556245TCONS_00002881-exon-sc0000023-1510915933:555997..556245Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1510915933:555746..555896TCONS_00002881-exon-sc0000023-1510915933:555746..555896Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1510915933:555275..555624TCONS_00002881-exon-sc0000023-1510915933:555275..555624Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1510915933:550916..551019TCONS_00002881-exon-sc0000023-1510915933:550916..551019Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1510915933:550731..550758TCONS_00002881-exon-sc0000023-1510915933:550731..550758Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1491911889:555997..556245TCONS_00002881-exon-sc0000023-1491911889:555997..556245Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1491911889:555746..555896TCONS_00002881-exon-sc0000023-1491911889:555746..555896Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1491911889:555275..555624TCONS_00002881-exon-sc0000023-1491911889:555275..555624Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1491911889:550916..551019TCONS_00002881-exon-sc0000023-1491911889:550916..551019Clytia hemisphaericaexon
TCONS_00002881-exon-sc0000023-1491911889:550731..550758TCONS_00002881-exon-sc0000023-1491911889:550731..550758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:550731..556245 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
103.036	129.382	82.7081	81.4849	320.445	155.449	145.705	155.844	37.0774	26.8099	42.1191	43.2801	46.6016	59.7788	30.2335	33.3305	35.4473	52.5472	29.3224	18.5319	29.8341	29.5145	144.161	113.819	70.004	63.943	25.1548	14.7407	99.8754	98.6279
Blast
[Close]
BLAST of TCONS_00002881 vs. Swiss-Prot (Human)
Match: RL11 (60S ribosomal protein L11 OS=Homo sapiens GN=RPL11 PE=1 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 1.796e-97
Identity = 133/172 (77.33%), Postives = 155/172 (90.12%), Query Frame = 1 
Query:  253 EKKDKANPMKEIRIQKLCLNICVGESGDRLVRAGKVLEALTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVKEYELRRRNFSETGNFGFGIAEHIDLGIKYDPSIGIYGMDFYVVLARPGYNVAYRRRKKAKVGFPHRIRKADSMKWFQHKYDGILM 768
            ++ +K NPM+E+RI+KLCLNICVGESGDRL RA KVLE LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKV+EYELR+ NFS+TGNFGFGI EHIDLGIKYDPSIGIYG+DFYVVL RPG+++A ++R+   +G  HRI K ++M+WFQ KYDGI++
Sbjct:    4 DQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
The following BLAST results are available for this feature:
BLAST of TCONS_00002881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL111.796e-9777.3360S ribosomal protein L11 OS=Homo sapiens GN=RPL11... [more]
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