TCONS_00002871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002871
Unique NameTCONS_00002871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002871 ID=TCONS_00002871|Name=TCONS_00002871|organism=Clytia hemisphaerica|type=transcript|length=2275bp
ATTACTCTCATATAGGTGGGGGAAATTGTTATTAAAAGTCTTATTATATA
TAAAGGATTTCACAGCTGGAAATTATTATGAGTTTCGATGAATTCCTACC
TGTCAAAAGTATATCATCGAGGTTATTTAGGACCGAGTTTCGATATTGTT
CACCATTTAGAAGAGATCGAAAGTCTGAAGAGTGAAATCGAGAACCTCAA
GCAACAAATCAACGTCTCCAACGATGAAAAGAATCAAACAAAGTTGTTGC
TAAGCGAAGAAACGGAGAAAAAGCAAACATTAAAGACAGAAAAaaGTGAA
CTGGAGAATGAAGTACTCGACTTGAAAGCAGAAGTTGAACTCAACAATGA
AAGCATACAACAGCTTGAAGACTCTTTAAAGGAAAAGGATGAAGCTTTGA
AACAGCAAAGCGATGAGAACCAAAAGAAAATAGAAGACCTCCAACAGAAG
CTCCATAATGAGACTGAAGTGCACCAAGCAAGCAAAACAACTATGGCTTC
CATCCAACAAACGCTGAAAGATGAATCTGTAGCTCTCCAAAATAAACTGG
ACGCAGCGACCAAAGAAACAATGCAAGTTCGACGTATGAAAGATGAAAGC
GAGAAAAGTCATAACGAAGAACTACAAAATATCAAGAATGCCCTCAAGAG
ACAAGAGCAGGAAATACAAAACCGTGACCGGAGGTTGAACGAAAACGAGT
TAGCAATCAAAACCATcgagaaagaaagaaatgataTCAAAGGAGAATTA
ACAGTATCCCAAGCCAAATTGGAGAATAGCAAAGATGAAAACAAGCTCTT
GATGGAAAGATTGATTGAATCAGAAGAAAAGGAAACGAAAGCTAAGCAGA
AATATTCTGAAACCAACCGAAAGCTAGAACAAGCTTTGGGTGGTCTACAA
GAGCTTggtcaagaaaatcaaaacattcaaGTACAGCAACAAATGAAATC
GACACGACAATGGGAAAATGATGCAGATATATcaaactgtaaaaaatgtg
acaaatctttctctttttctgTTAGAAAGcaCCATTGCAGAAACTGCGGA
TGTATTTTCTGCAAAGACTGTTCAGCATGGTCAGCAGTATTGGCGTCCAG
CAAGAAACCAGTGCGTGTGTGTGAACATTGCTCTATGGAGTTGAATAACG
TACGAGGATCCAGTGTCAGGCGACTATCAACGACGTCCATTCAATCAACC
GCGTCATCGGTTGCATCGCCGTACCGACCGTAAACTGAAAGTTACTCGTA
ACATATATTGTGGAATGTAATAATGGGTTGTTAAAAAGTCTTATATCTTA
AATTGTATATAATCTTGACATGGGTTTGGTACGATATATGGTAAGTAAGT
CGACAGGCTTTAAATCTCAAAAACACAGTTGCTGTCTGGATAATCATGCT
TgcttgaagaagaagaagtgaAACTAGAAACGCGTAATGTCTTGTGAGAA
CCTGGCATTGTCTATGGTGATTACATAATCGTTACTTGTACAGTGAAGTG
TTGTTATACAAGTGCCCTTGATGATCTCAATGTTTGTAATGTTGAACTTG
CTAGCAgctatttttttacaaattttttgtttatttcaattATGCATTCT
CTCTATTCACATACAAATTACAGTCATAGATTCTTAATTATCGTTATTCA
TCCAAAGTCTTCTGTATTGAAAACCCAAGAAGCTTGAATTTGACCCCCTG
TTtgttaaatttagaaaatatatacAGTATAGCTGTCAAAAGTtaagtct
cttattttgctctaagTTGCCTCATTTTCACTATGTTTAACTTATCTCGG
GGAGATAGATTTTTAGTCCGTTTGGTAACTTCGTCCCTGTTTATTAATAT
CATCTTGTAAATCTCATAGATGCTCAATTTTTGTACAGAGATATATTTTT
ATCACATTTAATCAATGCTGTGAAGTCTGTCTTAATTGTGCGTGGGCTCT
TTTCTGCATTAATGTGAGAACCAGGGCCATTGGTATCTTCTCGATTTAAA
AACGATCGCAACGTACGAGTGGACAAAAAGTAAGAAATTGAACCTTTGCA
ATGCAGAGGAGGCTTAAAAAATGGtctgatttttcaaatattagaccctg
aaaaacttttttaaaatccGAATCTTCAGTCTGGTCGGGAAGGGTCTTCG
CACTCTTAGGGTAGACTTAAATTAATCTTATCATTTTGAATTAGGAACTT
AAACAATTCAAGCAATTCTTCATATTTTATCCACGTTCAATGTCACTGTC
TTACTGTATTTGAGATGTCATCCAG
Run BLAST on NCBI

transcript from alignment at sc0000023:412080..421194-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002871 ID=TCONS_00002871|Name=TCONS_00002871|organism=Clytia hemisphaerica|type=transcript|length=9115bp|location=Sequence derived from alignment at sc0000023:412080..421194- (Clytia hemisphaerica)
ATTACTCTCATATAGGTGGGGGAAATTGTTATTAAAAGTCTTATTATATA
TAAAGGATTTCACAGCTGGAAATTATTATGAGTTTCGATGAATTCCTACC
TGTCAAAAGTATATCATCGAGGTTATTTAGGACCGAGTTTCGTAAGTTTT
ATATGGTCACTTTCCTTTTTTTCCAATTTTTCTGTAAGAAAAATACCGTA
TCATTCAGTTTGATGTTTTATATTCCAAGCCACATTCAGATTTGACTTGA
TTACCCAATTTCGATGGATGTTAACTTTTATGGTGGGAAGCGTTCGATTT
GCGTAAAAAGTCGCCTCTACAAATTCGAATGTTGGCTTCCAAAAGATTCC
AAGATTTTCTCTTATTACATGTTACATAATTTTGCCAAAACCTAAAAACC
TCTACAACCAAAACAATGCCATTGAAAATTCAATCTCTTAAATATAGTAT
TTATTCATTGTAGGATATTGTTCACCATTTAGAAGAGATCGAAAGTCTGA
AGAGTGAAATCGAGAACCTCAAGCAACAAATCAACGTCTCCAACGATGAA
AAGGTATAGAGTTGATTTAGTATCCTCATAAACAATGGTTGTCGTAGCCA
GACGATCTGGCTCTGGTGACTAAAGCCGTTACTAAAGCCATTGTCTTTTA
TACAAAAATCAGTAAGATTGCATTCAGCAAACGGGTTTTCGTCGCCAGGT
TTCCGGCCTATGTCGGTAAAACAAAAAAGGACGTTAGCCTGAAGATTACG
ACTGTCCTCCATCGCCTAAGCGCAAGGCTTGGGTACGAGTCTTTGAAAAG
AATAGTTTCTTGATTATTTAACCTTTTCTTGATTTTGGGATATGTACACG
GATCGATGGCTCTTTAACTATTGAAGAAAGCTCCATTCATTTATTTGGTG
TCTGCATTTTTCCAAACTATATAAGGCTTCAATGGCCAAAATTNTGATGA
TCTATTGAAGAAAGCTCCATTCATTTATTTGGTGTCTGCATTTTTCCAAA
CTATATAAGGCTTCAATGGCCAAAATTATAAGAACAAGCTTAGAACATTT
TAAGGCTTTATTGACTCTAAAACACCCAATTTCTTAGTAAATGGAGTGGA
CCTAAATAGTCACAATATGGTGAGAATAAGAACATACTAAGAATATTTTC
AGGCTTATAACTCAAAAAGTTAAGAATATCCGAAGGCTTCAAAAATTTTA
GATGTTCTTATAAAAAACGTGCCAGAATCGTTTGGGGGTTAGTAAATAAT
AACAATCGCATATCTTCTCTCATTAAACGTGCAATCAAATGTAATTGATT
CCCTTAAAACAAAATATAATTTCAATTGTAAAATGTGTTGAATTTCACAC
CTACTGAAAATTGTCGAACATTTCTCTAACAACATTTCGATAGTGCAGGT
AAAATGTGCTGCTTTGAATTGTCATCAAGTTTGACTTTACTGTAAAATGT
TTCTTCACCACTCTTCGTTTTCATTGAAAAAGGTCGTTCTCAAATGGATA
ATCTTACTAGTCTCATGTGTAATAATGGTCTTTGATCTTCAGAATCAAAC
AAAGTTGTTGCTAAGCGAAGAAACGGAGAAAAAGCAAACATTAAAGACAG
AAAAGTGAGTTTATTTTGTTTTTAATTAATGTATTGTCTAGCTTGAACGA
GCATCGAACAAACATTTCCTACTTCTACTTTCATAAAATTGTCTTCTTAG
AAGTGAACTGGAGAATGAAGTACTCGACTTGAAAGCAGAAAATTGTTTTT
TTAGAAGTGAACTGGAGAATGAAGTACTCGACTTGAAAGCAGAAAATTGT
TTTTTTAGAAGTGAACTGGAGAATGAAGTACTCGACTTGAAAGCAGAAAA
TTGTTTTTTTAGAAGTGAACTGGAGAATGAAGTACTCGACTTGAAAGCAG
AAAATTGTTTTTTTAGAAGTGAACTGGAGAATGAAGTACTCGACTTGAAA
GCAGAAAATTGTTTTTTTAGAAGTGAACTGGAGAATGAAGTACTCGACTT
GAAAGCAGAAAATTGTTTTTTTAGAAGTGAACTGGAGAATGAAGTACTCG
ACTTGAAAGCAGAAGTTGAACTCAACAATGAAAGCATACAACAGGTGATA
ATAATAAGTCTACTACCCTTATCTTTCCATCTATGGCAAAATGTTCGTTA
GTTATCCTAGTAAATTTGTAAATAAAGTTTTCAGCCACTCCACTTTTGTA
TCAGTTCCGTGGCCCCTGTAAGCGGTTTTTTGTAATGGTCGTTGTACACC
TGGTTTTCTTTAGCCTCTAGAATCGGAAGACTGGTAGAAGTTGGTATTTT
TGCGTCACTCACAAAATTAAGATGACGGTTTTAGTCTTGATCGTGTGGCC
AGGTGCATTCTTTCAGGTGCATTTTCATAGATTTCGGGGTAATTCATCTT
AATTTAAATCGATCTTTTCAACAGCTTGAAGACTCTTTAAAGGAAAAGGA
TGAAGCTTTGAAACAGCAAAGCGATGAGAACCAAAAGAAAATAGAAGACC
TCCAACAGAAGCTCCATAATGTAAGATTCTTTAGTCTGTTAGTCTGACTG
TCTTTTTTATTGCGACGAGATATTAAGTAAAAGAGCGTGTATCAAACTCT
ACAATAAGCAGACACTTGACACAAAATACTTCCTTGCAAATGTTTAGAAT
GATTCGCATAGCTAAGATTCTATATGTTCGATGAAAAAATAATTTTCCTT
AGGATGAGCAGAGCTCTTCATGTTAAGTGTGGCCCAGACCTTTAGAGGGA
TTCTCAGAATTTATCAGAGGAGCTTATTCTTTTTGTAAATATCTTCTAGA
GATTCAAGGTCATATTTTTATGTGTAAGATAAGTGTCATCCAAGTAAATG
AGTTATCTTCAGAATTATCTCTTTGAATATATCCAGGAGACTGAAGTGCA
CCAAGCAAGCAAAACAACTATGGCTTCCATCCAACAAACGCTGAAAGATG
AATCTGTAGCTCTCCAAAATAAACTGGTAAACTGGTCTTAATTGGTTTAT
AGCCTCAAAGAAATGTCTTAAGTTCTGACCATTTCAAAGTATGGCTTTGA
ACTAAAAAATTTGGCGTTTTCTGCTGTAAAAGTAAGGTTTTATTAAAGGT
TTTATTTTTACATAAACATGTTCCCGTTTCATATCAGACACATGTGTCAT
ATTAGGACAGTGTCTGCCTATTGTTAAATTGTGCTGAATAAACAAAAAAT
AGTTCTTTTCCTTTTTCTGACCAATCTTGCTCCACATCCGTGTCAATTCA
ATGTAAAAAAGCTTGTAAGTTGAAATTAATGAGTAAGCAAACGATTGTCA
CTCTTATTTAAAAACAAAACCTTTAAGACCTATTTTTGGTTGATGGGGCT
ACTCATCTTTCTAAAACTAGTTTTAAACTAAATACAGTACTTGACATCCA
ATTTTTCATCGGCTATATATTTCATCGGCTATATATTTCCAACAATCGAC
GGACAAGGCGAATTTCCCATTATTTTTTAGGACGCAGCGACCAAAGAAAC
AATGCAAGTTCGACGTATGAAAGATGAAAGCGAGAAAAGTCATAACGAAG
AACTACAAAATATCAAGAATGCCCTCAAGAGACAAGAGCAGGAAGTATGA
CCACAGATATCTTTTATAAAACACTAGATGGAGCTACTTGGTCCCTGGCT
GAAGCAAAATGGTCGACTTAGTAATCTTAAAAGTAAATCACAGTTCAGTG
ACAACAATTCGATCAATAAATATTATTCCCGCGCCTCCTCGTTTCCCGCC
ATGTCAGTTGTTTTTTGGTATTGAACAAATTGCCGATGCCGAACTGTATT
CTAATAGAAAACTGTAGCCTACTCATCAAAGATGGGACATTATTTTGCTT
AAACTGCCGTGGATTGAGAAAGACAAAGTAGCTCTATCTAGGGTTTTTAT
GTAAGATATCTGTGGGTACGGCACCATTGCAATAGTTTGTAATAGATGGT
GACAACAATCGTTGGAATGGACTTTTAAGGATCAGCATTAATCATAGAAG
ATCGTCTATCTTTTCTGCGTTCAATGGAATCGAACTCGTCAATTCAATTA
TCTTCAAAAACATAAGACTGTTTTGATATTATTCAGTTGATCTTTTGTCA
ACCTTCGTTCAAAATTAGAAGATTCAAAGCAGAGAATCAGCTGTTAGTTT
ACGCTAGAAAATCATCAAAGCGGAACTCACCAAGAAACGGAATGAAAAAT
CCCGGTATTTGGTTAGGTGCTCGCTAAGTCAGCTGTTAATCAGAGTTAAT
TCTTTTGGTCTCTTACCGGCAAGCCTTACGTCAGTTTTGGACTTTCACAT
TCTGTTACAAAAGCTGTAGAGGGTCCGAAATATTTATGCCAGCTTACTTT
TTTAGATACAAAACCGTGACCGGAGGTTGAACGAAAACGAGTTAGCAATC
AAAACCATCGAGAAAGAAAGAAATGATATCAAAGGAGAATTAACAGGTGA
AAATTCAAGTTTTTATTCATTTGCTGACAGTTTTGAAGAATTCTGTAAAA
TATTAATCATTCCTCGCTGACACTCGACAACCCTTCCCCAATCAAATTTG
ATAATGTCGAGTGGCTGTAAAGGATCAAAAACTGTGAAAATATCCCAACT
TGTGACAAATATTAGTTTGTAGTTTGGTTTTCTTTTCAATAATGGTCTTG
AAGTCCCATACACGGAAATTTTTTTTTCTGTATTTAGTATCCCAAGCCAA
ATTGGAGAATAGCAAAGATGAAAACAAGCTCTTGATGGAAAGGTAATAGT
TGATGTTGATAGAAAAATCCCCCTCCATTTCCACTTCCTTGTAACGACTG
GCAATATATCTTCAAGATTTTGCTCGCAATATTGATTAATTTAGATTTAA
ACCTTTTTTTGTCCTAGCAATCAAGACCCACGCCATTCTTTCACTGGAAT
TTGGAAGTCATGTATTCGTAAATTCTCTCTTGGTACAAGATTTCCAAATT
GATCATAAGGTTATTTCTAACTAATGTTGTATCTTTAGATTGATTGAATC
AGAAGAAAAGGAAACGAAAGCTAAGCAGAAATATTCTGAAACCAACCGAA
AGCTAGAACAAGCTTTGGGTGGTCTACAAGAGCTTGGTCAAGAAAATCAA
AACATTCAAGTAAGTCTCTTAACCATATCAATCTATTATATCTAGTATTT
TAAAAACTTCAAAATTTTGAAATGATGACCTTTCCGTGCTCTGAAATCCC
TTGAAAAGAGTTAATATCTAAATCTATTCATCATTTTTGGACCTACCTCC
GGGTGCCCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTTCGTT
CGTTCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAACTTTT
TCTGATTTTATGCACAATGATGCAAAATGGCAATGCCCAGAACGTGACGG
AGCCCGATTTTTGAGAAAAAATTTATTTGGGCAAATTTGGGCCAAAAACT
ACCTAAAAATAGGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTT
TTTTCTGATTTCTTGTACAAAGATGGAGGACAAGATTCTCTAAAGAATGA
CTGAAGTGGTTTTTCCCGAAAAATTCTTTTTCGCCTTAAAAAACGGATTT
TCGTATTTTGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTTTC
TCAAAGTTGACTCATTATTTTTTTCTGGTTTTTTGCACAATGATGCAAAA
TGGCAATGCCTAAAATGTGACGAAGCCAGATTTTCAAAAAAAAATATATT
TGGGCAAATTTGGCCCAAAAAGTGCCTGAAATACGGTTTTTTGGACTTTG
TGCAAAATCCTGTTATTACTTTTTTCTGATTTTTTATACGAAGATGGAAG
GCAAGATTTTCTAAAGAATGACTGAAGTGGTTTCTCCCGGGAAATTCTTA
TTCGCCTTAAAAGACGGATTTTCGTATTTTGGGGAAATCCCCTTTAACCA
AATAAGAAAATATAGCTTTTCTCAATGTTGACTCCTAATATTTTTCTGAT
TTTTTGCACAATGATGCAAAATGGCATTGCCCAAAATGTGACGGAGCCAG
ATTTTTAAGGAAAATTATTTTGGGCAAATTTGGGCCAAAAACAGCTTAAA
AGGTTTTTTGGGCCTGAATGGTTTTAGTGATTTTCGTATTTGGGGAAATT
CCTTTTTACCATTTTACATTATTCAACACACAAGCTTTATTTTTCCATTC
TGAATTTTTGTACAATTATTGTCACTTTTTCCTTATTTTCATCTGATGTT
AATCATTAGGTAGGTCTATTCAGCATGTTGCTTGTTTGTTTTGACTTCAG
GTACAGCAACAAATGAAATCGACACGACAATGGGAAAATGATGCAGATAT
ATCAAACTGTAAAAAATGTGACAAATCTTTCTCTTTTTCTGTTAGAAAGG
TGAGTTAGCCCAACAAAATAGTTTCAAATTTTTTCAGAAAAAAAAAACTT
TTGATGGGCCATTCCATTAACAATGATAAAAAAGAAAAGGCTTAAAAATC
TTCTAGCAATAAAATTATACATGGGGAAGTTAAAAGAATTTAGGCTACGT
CATATCTTCCTTCGTTTCGAGCGTAAAACTCCTACTCTTTGGGCTATGAG
CACTGCTCTTGTTTTGAATATTGAAATTCTCCAGATAAATCGCATGCGCA
CTGAGGTTTTAATGAAACAATAGAGAGTTTCGAAACCTAAGCCAATCAGC
TGTGTTTTAAACATTCTTTCATTTAAAATCTCTATTGATAAACATCTTTT
GTGAATGTTGTCTATTTTGTTTAAACCTATTAATACGCAATTCCCGGTGG
GGGTCACTAGTGGCCGCCTATAGCAGTGCCTATAGACCAAGAGTAAGGCC
TAAAAGCCTGGATCTGTCTATTGTGTAGACTAAAAGAATTCAGCTCACAG
TTATGAGTAAACAACATATTGACCCCTTTAAATTACGGTTAAAAACCTGA
AAGATACGCTTTCTTTTCTTTTTAGCACCATTGCAGAAACTGCGGGTAAG
TTTGAATAAAGGTTACGTCATCTTCAATTTGAAGAACTACATTCAACTTA
GTCATAATTTAGTCGTCTTTCTGCCCTGCCTATTATAATTATTAGAGTAG
GCAAAAGTGGGTAGAAATTTGGCAGCTAACCAACTAAAATCTTTTCTTGA
AAGAAGTTATTGCATTAACGTCAGAAGAGGTCAATCATCGATCATTGACT
TCAGATAGTCAACTTTCTGCCAACTTTAATTCAGAATTTGAATAGGTAGG
GCAAAAAGTGGGCCATCTAAACCAGAGCTTGTCACTTGTCGTTTGTCCTG
GGAAAACTTTTCTCAGAAGAAAATCTAGATTTTTTGCTTATTCTCCTCAA
ACCAAATTCGTAGTTACGTCTCTAGATAATTTTTGTTTTAAAAAGCCATT
CCCTATTTAATTACAGATGTATTTTCTGCAAAGACTGTTCAGCATGGTCA
GCAGTATTGGCGTCCAGCAAGAAACCAGTGCGTGTGTGTGAACATTGCTC
TATGGAGTTGAATAACGTACGAGGATCCAGTGTCAGGGTATGTAATGATA
GAAATATAATAATAACATCTGTTTTAAGTGACGTGCTTCAAAGTACTTCA
AATTTTGTAAGCAGCTGAAGAATCTTTCCACGAAAGCCATTTCGAAAACT
GAAACAAGAACGACATAAAGATGAACAAAAAATAAATATTTATTGAAACA
AAAAAGGATTTATATGTAACCAAAGATTTAGTAACCAAACAATTTTAATC
TCGAGATTCTAAGTGGGCCTCGCACCCCCCACCCCACCAAGATGCTTCCC
CTAGTAAAAAAAAATTGAAGATGCTCGAAGGGTTATAACTGATGTGTTAT
GAACGAATAGTCACTCGTTGATACCTGACACAAAACAGCACTAAACCTTT
CTAATGAATTTCAGCTCTTTTATTCTCTTTGGGGATTTACGGTATGACAA
GATATCAACTGAACTTAAACTATGATTTTAAAGAAAATTTGTTCTTCCCT
TATATTTCAGCGACTATCAACGACGTCCATTCAATCAACCGCGTCATCGG
TTGCATCGCCGTACCGACCGTAAACTGAAAGTTACTCGTAACATATATTG
TGGAATGTAATAATGGGTTGTTAAAAAGTCTTATATCTTAAATTGTATAT
AATCTTGACATGGGTTTGGTACGATATATGGTAAGTAAGTCGACAGGCTT
TAAATCTCAAAAACACAGTTGCTGTCTGGATAATCATGCTTGCTTGAAGA
AGAAGAAGTGAAACTAGAAACGCGTAATGTCTTGTGAGAACCTGGCATTG
TCTATGGTGATTACATAATCGTTACTTGTACAGTGAAGTGTTGTTATACA
AGTGCCCTTGATGATCTCAATGTTTGTAATGTTGAACTTGCTAGCAGCTA
TTTTTTTACAAATTTTTTGTTTATTTCAATTATGCATTCTCTCTATTCAC
ATACAAATTACAGTCATAGATTCTTAATTATCGTTATTCATCCAAAGTCT
TCTGTATTGAAAACCCAAGAAGCTTGAATTTGACCCCCTGTTTGTTAAAT
TTAGAAAATATATACAGTATAGCTGTCAAAAGTTAAGTCTCTTATTTTGC
TCTAAGTTGCCTCATTTTCACTATGTTTAACTTATCTCGGGGAGATAGAT
TTTTAGTCCGTTTGGTAACTTCGTCCCTGTTTATTAATATCATCTTGTAA
ATCTCATAGATGCTCAATTTTTGTACAGAGATATATTTTTATCACATTTA
ATCAATGCTGTGAAGTCTGTCTTAATTGTGCGTGGGCTCTTTTCTGCATT
AATGTGAGAACCAGGGCCATTGGTATCTTCTCGATTTAAAAACGATCGCA
ACGTACGAGTGGACAAAAAGTAAGAAATTGAACCTTTGCAATGCAGAGGA
GGCTTAAAAAATGGTCTGATTTTTCAAATATTAGACCCTGAAAAACTTTT
TTAAAATCCGAATCTTCAGTCTGGTCGGGAAGGGTCTTCGCACTCTTAGG
GTAGACTTAAATTAATCTTATCATTTTGAATTAGGAACTTAAACAATTCA
AGCAATTCTTCATATTTTATCCACGTTCAATGTCACTGTCTTACTGTATT
TGAGATGTCATCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001562XLOC_001562Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002871-exon-sc0000023-1575043694:421054..421194TCONS_00002871-exon-sc0000023-1575043694:421054..421194Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:420642..420731TCONS_00002871-exon-sc0000023-1575043694:420642..420731Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:419591..419652TCONS_00002871-exon-sc0000023-1575043694:419591..419652Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:419101..419170TCONS_00002871-exon-sc0000023-1575043694:419101..419170Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:418675..418770TCONS_00002871-exon-sc0000023-1575043694:418675..418770Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:418219..418308TCONS_00002871-exon-sc0000023-1575043694:418219..418308Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:417601..417714TCONS_00002871-exon-sc0000023-1575043694:417601..417714Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:416749..416839TCONS_00002871-exon-sc0000023-1575043694:416749..416839Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:416453..416507TCONS_00002871-exon-sc0000023-1575043694:416453..416507Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:416086..416206TCONS_00002871-exon-sc0000023-1575043694:416086..416206Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:414796..414894TCONS_00002871-exon-sc0000023-1575043694:414796..414894Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:414200..414219TCONS_00002871-exon-sc0000023-1575043694:414200..414219Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:413658..413778TCONS_00002871-exon-sc0000023-1575043694:413658..413778Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1575043694:412080..413184TCONS_00002871-exon-sc0000023-1575043694:412080..413184Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:421054..421194TCONS_00002871-exon-sc0000023-1510915933:421054..421194Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:420642..420731TCONS_00002871-exon-sc0000023-1510915933:420642..420731Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:419591..419652TCONS_00002871-exon-sc0000023-1510915933:419591..419652Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:419101..419170TCONS_00002871-exon-sc0000023-1510915933:419101..419170Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:418675..418770TCONS_00002871-exon-sc0000023-1510915933:418675..418770Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:418219..418308TCONS_00002871-exon-sc0000023-1510915933:418219..418308Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:417601..417714TCONS_00002871-exon-sc0000023-1510915933:417601..417714Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:416749..416839TCONS_00002871-exon-sc0000023-1510915933:416749..416839Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:416453..416507TCONS_00002871-exon-sc0000023-1510915933:416453..416507Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:416086..416206TCONS_00002871-exon-sc0000023-1510915933:416086..416206Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:414796..414894TCONS_00002871-exon-sc0000023-1510915933:414796..414894Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:414200..414219TCONS_00002871-exon-sc0000023-1510915933:414200..414219Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:413658..413778TCONS_00002871-exon-sc0000023-1510915933:413658..413778Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1510915933:412080..413184TCONS_00002871-exon-sc0000023-1510915933:412080..413184Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:421054..421194TCONS_00002871-exon-sc0000023-1491911889:421054..421194Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:420642..420731TCONS_00002871-exon-sc0000023-1491911889:420642..420731Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:419591..419652TCONS_00002871-exon-sc0000023-1491911889:419591..419652Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:419101..419170TCONS_00002871-exon-sc0000023-1491911889:419101..419170Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:418675..418770TCONS_00002871-exon-sc0000023-1491911889:418675..418770Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:418219..418308TCONS_00002871-exon-sc0000023-1491911889:418219..418308Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:417601..417714TCONS_00002871-exon-sc0000023-1491911889:417601..417714Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:416749..416839TCONS_00002871-exon-sc0000023-1491911889:416749..416839Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:416453..416507TCONS_00002871-exon-sc0000023-1491911889:416453..416507Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:416086..416206TCONS_00002871-exon-sc0000023-1491911889:416086..416206Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:414796..414894TCONS_00002871-exon-sc0000023-1491911889:414796..414894Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:414200..414219TCONS_00002871-exon-sc0000023-1491911889:414200..414219Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:413658..413778TCONS_00002871-exon-sc0000023-1491911889:413658..413778Clytia hemisphaericaexon
TCONS_00002871-exon-sc0000023-1491911889:412080..413184TCONS_00002871-exon-sc0000023-1491911889:412080..413184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:412080..421194 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.16986	1.39772	0.601493	1.63314	31.4183	25.2367	14.8428	19.5181	55.1203	30.2895	33.1138	63.1485	0.604471	0	0.140596	0	0	0	4.08961e-05	0.309352	1.56793	0	1.27226	0.252074	1.63421	1.88416	0.0905251	1.81624	1.484	0.875153
Blast
[Close]
BLAST of TCONS_00002871 vs. Swiss-Prot (Human)
Match: EEA1 (Early endosome antigen 1 OS=Homo sapiens GN=EEA1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.431e-27
Identity = 80/221 (36.20%), Postives = 130/221 (58.82%), Query Frame = 1 
Query:  496 ASIQQTLKDESVALQNKLDAATKETMQVRRMKDESEKSHNEELQNIKNALKRQEQEIQNRDRRLNENELAIKTIEKERNDIKGELTVSQAKLENSKDENKLLMERLIESEEKETKAKQKYSETNRKXXXXXXXXXXXXXXXXXXXXXXXMKSTRQWENDADISNCKKCDKSFSFSVRKHHCRNCGCIFCKDCSAWSAVLASSKKPVRVCEHCSMELNNVRG 1158
            A +   +K++ V ++   +   K TMQ+  +        NE L  +K       +E Q+  RR++E       +EK+ +D++GE+ V +A ++N++DE + L+ER ++ E +  K + K  E  RKL+     +QELG+ENQ++Q++      R+W  D ++ NC  C K FS +VR+HHCR CG IFC +CSA +A+  SSKKPVRVC+ C    N+++G
Sbjct: 1216 AKLHSEIKEKEVGMKKHEENEAKLTMQITAL--------NENLGTVK-------KEWQSSQRRVSE-------LEKQTDDLRGEIAVLEATVQNNQDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDAC---FNDLQG 1411
The following BLAST results are available for this feature:
BLAST of TCONS_00002871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EEA11.431e-2736.20Early endosome antigen 1 OS=Homo sapiens GN=EEA1 P... [more]
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