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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002868 ID=TCONS_00002868|Name=TCONS_00002868|organism=Clytia hemisphaerica|type=transcript|length=730bp
CGACAAGATGGCGACTTTTTCGGGTCAGCAAATTCCAAAATGCAAGGACC
GGCGAAATAACtatcaaaatgcataaaatataTCTCCTGGTAGGTCAAAG
AGAGCGAATTAATCTAGCCCAACTAACCTTTATACAATCTTTTATTATAG
ATACATCATATTGAATTGCTACATATCTAGACAAAATGACGTGAGTtgtg
aaaaacaaacaaaaaacactttcaaatatttcataaatttttgagcCAAT
GACAAAGGAAGAACAACTCTTTGGATCTTGCAACTATGAAAATAGATCGC
TCCAAGATAAAGAAAAGCTCATCTGAAGTGCCTGGAGACTGTCAGAAAGT
CATCCAATTCTTGAAGACTTGCAGCGATGAAGAGCTTCTGCAAAAATTGG
AACAAATCAATGTTTGGTATTTTGGCAAGGTAAGATATTATTCAAGCAGG
ACTGCCACTAtaacagggctcgaaataacggtcggacatcggacattgtc
tgacccaattgctgaaatgtccgcccaaatcgattctagtcggacatcat
gtccgacccaattacTTTCGGTGCCTTCAAATAAATTGTCAGATGCGTTG
TGaactttccaaaagaaattataatttacatagaattagtaacttcttta
tttacacacaaaaactctccaagttgcgatcattagtgtcagatattcat
tttgtgtgatgctttttctcaacaaatgaa Run BLAST on NCBI protein sequence of TCONS_00002868-protein >TCONS_00002868-protein ID=TCONS_00002868-protein|Name=TCONS_00002868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MKIDRSKIKKSSSEVPGDCQKVIQFLKTCSDEELLQKLEQINVWYFGKVR
YYSSRTATITGLEITVGHRTLSDPIAEMSAQIDSSRTSCPTQLLSVPSNK
LSDAL Run BLAST on NCBI transcript from alignment at sc0000023:325630..329380- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002868 ID=TCONS_00002868|Name=TCONS_00002868|organism=Clytia hemisphaerica|type=transcript|length=3751bp|location=Sequence derived from alignment at sc0000023:325630..329380- (Clytia hemisphaerica)
CGACAAGATGGCGACTTTTTCGGGTCAGCAAATTCCAAAATGCAAGGACC
GGCGAAATAACTATCAAAATGCATAAAATATATCTCCTGGTAGGTCAAAG
AGAGCGAATTAATCTAGCCCAACTAACCTTTATACAATCTTTTATTATAG
ATACATCATATTGAATTGCTACATATCTAGACAAAATGACGTGAGTTGTG
AAAAACAAACAAAAAACACTTTCAAATATTTCATAAATTTTTGAGCCAAT
GACAAAGGAAGAACAACTCTTTGGATCTTGCAACTATGAAAATAGATCGC
TCCAAGATAAAGAAAAGCTCATCTGAAGTGGTAAGTTAATATTATTTTAT
ATCAGAAGCTTGGGGAGAAAGCCCGCCGAAGGGCTAGATCAATCAGGGCT
TCCTTGGCATTTTTTAGCATTAGTTCGGATAGAATGAAAACATACCTGAT
CAACACAACCAAAGCTTGTGTCTTCTGTTACTCTTTCCTTCTCAACAACT
TTCGCTTTTGGTTATGTACTGTCAACTGCTCTAACTTGGGACTATCTGAC
AAAACATGGGACTGCTGCGATTCGGCCACCATTTCACCGAACCTTCAAAA
GTCATCATTTGATTTGTATTTGAGTTAATGAACGGTGTATTAAAAAAAAC
ACGATTTCTCTTTCGCACCGAGTAGGGTTTTAAATCGAAATGTGAAAAAA
TCCGTAGTGGAGAACACGATGGAGCAGCAAGTTACACATTCTTTATGGCG
GCAATCAAAAATATGTTGCGTTCGGGTCGTCCAACAGACTGTTTATTTAC
AAGAAAACCCGATTCGGAAAGTTGGTAAAATCATCAGGTTTTTTTAGGGC
GCTGTTCGCAGGTTTGGATCTTTCCCATAATGGCGGGCACGGGCAAACGG
AGCATGTCTTTGAATCATTATTCTTTGTTTACTTAACCCACATTGAGTCT
GGGTCAAGTTTTTTCATGTACCCTTATTGAAATTTTCATATCAAAATTCA
GCAACGCGGTAGGGCCAATATCCTGGGGGCCGAAAATAAGGGCTGCTTTA
AGGTTTTAACACATGTGCGCGCACATTTAGTTTGGCAAAATAAAGATGGC
GTCATAAGATTCTGTTGATTGCCGACTTGATTCATCGGGATTTACTAGAT
CTTAAAAATCCGACAAAATTTACTACCGACCAACCGACCGACTGGATTTG
AAGATGTTTTGGGACCCGAATGGAACATATTTTTGATTGCCGCCTACCGT
AACTTGGTCTATTTTCGACATCCCTCTTCTAATTTCGACACCCTTTTTTA
GAGATAGGAATAGTAGAAAGATTGGAATCGCTTATGGAAACTATATTTCT
TTGCTTAGCTACCAGAGAAGAAAAAATCTTTTGTCTATCAGTGATTCTGA
CCTTACTATTATTCCTATCGCTAAAACTGGGTGTCGGAATTAGAAGAGGG
ATGTCAAAATTAGACCAACTTACGGTATTTGTTAATCCCATCGAGCGATA
GGCGGTTAGGCGGCGGTGGATGGCGGTGGGCAGCGGTGGGCAGCGGGCAT
TCTCTAATTCTCCAATCGGTGTCTGGTCATTTTGAATGAAAATAAAAAAG
TTTAAAAGGGCGTGCTATCAGTGAAAGTTATCGTGATATGTTATGACAGA
AAGTATGATTGATAAACTTGGTGGAGTTATCAAAACAAATTTGCTGTCAA
AGAGATTTGACAGTAAGTGAAAATACAGGCCAGATTATCAACAGCCCCAT
GTTTTGACCAATCGTCCCAAGTTAGAGCAGTTGACGGTAGGTTTTAAAAT
CCACAAGTAATGAACCTCTGATAGCTTTATCTAAATAAATCTTGTTGAAA
ACCTTCTGTCAGGTTTCATTCCGTACCATAACTTGGTTTAATGTTGGCAC
CCCTCCTCTAATTCCAACACCCTTTTTATCAGCAGAAATTTATAGAAACT
GTTTTTCTTTGCTTAGTCAGTGAGGCTGGAACTTCGATTTTTGAGGATTA
CGATTTTACCAGCTTTTTAGCGATTTTTGCCTCGCTTACCCAAATCTTGC
AACCTCTTTTACAAGGAAGATCAAAATTAGAGTTTTTCAGCGTTCCGAAA
AAAAAGGCATAGTAGAAATTTTTTTATCTTCACAGGATCGATTCTCAACA
ACAAAATACATCTTTTGGTCTTTGGGTTTGTTTCTGACGTTTTTCCTTCA
AAGAATATCGATCACTTTCCTTTTCTCCTTGAGTGCGCAAAAAAAACGAT
TAGCTTGCATTCTCGCGCAGGCGAATAAAGATGAGGCAGCAATCTTTTCC
TCTTTTTCTGTTAAAAATTTGGGGCAAAAACTGCCTGAAAATGGGGTTGT
AGAGGAACGGTTCTTTACAGTTTTTATTTTTAAATCTGACAGAGCCTAAT
CTTATAAAAATGTTTCAGCAAATGTGGGCCAAATTTTGGACTTTTCTCAA
AATTGTTTCATTGGTTTTCTTCCCGATAAAAAAGGATTATTTATGTTTAC
TGTATGCATAGCTTCAGCTCCCCCCTTTCTTGTTTTTTTTTGGGGGGGGG
GGCTAAGAAATATTTTGGCCTTTGAAGGCTAAAATTACCAAAATATTTGG
GGGGACCTAGATGATCTGACTGAGACTCTGGGGGCTGTTCAGCTAATTTC
AAAAGATCTCTTATCTTACTATTAAATCAAATATAAAAAGCAAAAGATTT
GTAAACATAAATATTAATACAAGTAAAATTTAGTTTTCATTTATCAGTAC
TGTACACTTGCATATATTTTTTATTGACTTCTCTCTACGGGGAGGGGAGA
ACAATGTTTTTGTTTTAGGTTATCTTGCTTAGGGGACCTAGCACAAGGCA
ACTTTTTGGGGGGAGCTAAATTGTTGGGGGGAGCTAGAAACCTGGCTGAA
GCTATGGTATGCCGAAAACATAGCATGGTTTGATTTCCAAAAAATAATTT
TATTTGGGGCTAATTACCTCTTAAACATGGGAATCCATCGTAGAACAAGT
TTTTTCATATTTTCAAGCTTGCACATNATTATTACCTCTTAAACAAGGGA
ATCCATCGTAGAACAAATTTTTTTCATCTTTTCAAGCTTGCACATCTTTG
TGCATTGCTGTTAACTTTCTTTATTTTGTTTGAACATTTTCATCATCATT
CAGCATGTGCCTTGATGTCCTGCATGTTCCTCTGTAAATCTAATATATTT
ATGGGATTTACTCTTTCAAATTTGGCTGCAAACTGCCATATTGATCACTT
TGATTGTTTTCTGAAAATAGTGCTGGGAAAACAGAAAATATTGAAATCTT
AAAATGGATAAATAATGTATTATTGAATTAATTAAATATTTTTCTGTCTA
GCCTGGAGACTGTCAGAAAGTCATCCAATTCTTGAAGACTTGCAGCGATG
AAGAGCTTCTGCAAAAATTGGAACAAATCAATGTTTGGTATTTTGGCAAG
GTAAGATATTATTCAAGCAGGACTGCCACTATAACAGGGCTCGAAATAAC
GGTCGGACATCGGACATTGTCTGACCCAATTGCTGAAATGTCCGCCCAAA
TCGATTCTAGTCGGACATCATGTCCGACCCAATTACTTTCGGTGCCTTCA
AATAAATTGTCAGATGCGTTGTGAACTTTCCAAAAGAAATTATAATTTAC
ATAGAATTAGTAACTTCTTTATTTACACACAAAAACTCTCCAAGTTGCGA
TCATTAGTGTCAGATATTCATTTTGTGTGATGCTTTTTCTCAACAAATGA
A Coding sequence (CDS) from alignment at sc0000023:325630..329380- >TCONS_00002868 ID=TCONS_00002868|Name=TCONS_00002868|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000023:325630..329380- (Clytia hemisphaerica)
CCTGGAGACTGTCAGAAAGTCATCCAATTCTTGAAGACTTGCAGCGATGA
AGAGCTTCTGCAAAAATTGGAACAAATCAATGTTTGGTATTTTGGCAAGG
TAAGATATTATTCAAGCAGGACTGCCACTATAACAGGGCTCGAAATAACG
GTCGGACATCGGACATTGTCTGACCCAATTGCTGAAATGTCCGCCCAAAT
CGATTCTAGTCGGACATCATGTCCGACCCAATTACTTTCGGTGCCTTCAA
ATAAATTGTCAGATGCGTTGTGAATGAAAATAGATCGCTCCAAGATAAAG
AAAAGCTCATCTGAAGTGCCTGGAGACTGTCAGAAAGTCATCCAATTCTT
GAAGACTTGCAGCGATGAAGAGCTTCTGCAAAAATTGGAACAAATCAATG
TTTGGTATTTTGGCAAGGTAAGATATTATTCAAGCAGGACTGCCACTATA
ACAGGGCTCGAAATAACGGTCGGACATCGGACATTGTCTGACCCAATTGC
TGAAATGTCCGCCCAAATCGATTCTAGTCGGACATCATGTCCGACCCAAT
TACTTTCGGTGCCTTCAAATAAATTGTCAGATGCGTTGTGAATGAAAATA
GATCGCTCCAAGATAAAGAAAAGCTCATCTGAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002868-exon-sc0000023-1575043694:329051..329380 | TCONS_00002868-exon-sc0000023-1575043694:329051..329380 | Clytia hemisphaerica | exon |
| TCONS_00002868-exon-sc0000023-1575043694:325630..326029 | TCONS_00002868-exon-sc0000023-1575043694:325630..326029 | Clytia hemisphaerica | exon |
| TCONS_00002868-exon-sc0000023-1510915933:329051..329380 | TCONS_00002868-exon-sc0000023-1510915933:329051..329380 | Clytia hemisphaerica | exon |
| TCONS_00002868-exon-sc0000023-1510915933:325630..326029 | TCONS_00002868-exon-sc0000023-1510915933:325630..326029 | Clytia hemisphaerica | exon |
| TCONS_00002868-exon-sc0000023-1491911889:329051..329380 | TCONS_00002868-exon-sc0000023-1491911889:329051..329380 | Clytia hemisphaerica | exon |
| TCONS_00002868-exon-sc0000023-1491911889:325630..326029 | TCONS_00002868-exon-sc0000023-1491911889:325630..326029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023 | supercontig | sc0000023:325630..329380 - |
Blast
The following BLAST results are available for this feature:
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