TCONS_00002853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002853
Unique NameTCONS_00002853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002853 ID=TCONS_00002853|Name=TCONS_00002853|organism=Clytia hemisphaerica|type=transcript|length=808bp
TTTCAAGAAAATGTTGAGCGTGCCGGTACCCTGGAAATACGGAATCAACC
TACCGTCCACAGTATTTCCGCTGTATAACCATTCGAAGATTGTACACTAT
TTACGCTCCAAACCATATGACGTTTCTATCAACTGGAAAAGTCCGAATGA
AGCACATTTTATGAGTCGCGTACAGTTTGTACACGTTGCAAGGAGTATCG
AAGGAGGAGATCGTGCTCTAGTGAGGACTTCTAAACGGAAAGGTCCTCCC
CCACATGGTATCAAAATTTATCGGAAAGGAACCTCTTTTATTGGTACTCG
ACAGTTTTACGATTTCCTAGTGAACGACCCGTTAGCGAAACAGTTCTTAG
ATTGGACGCGGGATACGAAGAATCCTGAAGACTTTTATTACGCTAGCTTA
TATAAACATAGAACGAGAGAGCCTTGGTCCTCACCCGATTTTGACATTTC
GGGATTGATATCGGGATACAAAGTCCGACCGGAACACGAGCTGCAAGATG
TGTCTGTAGACcctgaaaataatttgttaATTTCACTTTGGGGCAGTGAT
CGTGGGCATCGGTGTCACGGGAAATACAGAGGCTCTGTATGTATCCTAGG
ATCTGCTGATTTGAAATGGCTTTTACAACAAGGATATTTATTTGCGAATT
CGTTCGATTTTCGAGTTGATCGACTGGTTGTTGATTGTTTATCGAAGAAT
TTGAAGGATccgattttgaaaagtttgtgaGTTAGTGATTTAATGATTTA
TCTTTGCAGAAAGATCTATAatgtttgttttaaaatttacttTGTGTCTC
AATTCAAG
Run BLAST on NCBI

transcript from alignment at sc0000023:206457..207264-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002853 ID=TCONS_00002853|Name=TCONS_00002853|organism=Clytia hemisphaerica|type=transcript|length=808bp|location=Sequence derived from alignment at sc0000023:206457..207264- (Clytia hemisphaerica)
TTTCAAGAAAATGTTGAGCGTGCCGGTACCCTGGAAATACGGAATCAACC
TACCGTCCACAGTATTTCCGCTGTATAACCATTCGAAGATTGTACACTAT
TTACGCTCCAAACCATATGACGTTTCTATCAACTGGAAAAGTCCGAATGA
AGCACATTTTATGAGTCGCGTACAGTTTGTACACGTTGCAAGGAGTATCG
AAGGAGGAGATCGTGCTCTAGTGAGGACTTCTAAACGGAAAGGTCCTCCC
CCACATGGTATCAAAATTTATCGGAAAGGAACCTCTTTTATTGGTACTCG
ACAGTTTTACGATTTCCTAGTGAACGACCCGTTAGCGAAACAGTTCTTAG
ATTGGACGCGGGATACGAAGAATCCTGAAGACTTTTATTACGCTAGCTTA
TATAAACATAGAACGAGAGAGCCTTGGTCCTCACCCGATTTTGACATTTC
GGGATTGATATCGGGATACAAAGTCCGACCGGAACACGAGCTGCAAGATG
TGTCTGTAGACCCTGAAAATAATTTGTTAATTTCACTTTGGGGCAGTGAT
CGTGGGCATCGGTGTCACGGGAAATACAGAGGCTCTGTATGTATCCTAGG
ATCTGCTGATTTGAAATGGCTTTTACAACAAGGATATTTATTTGCGAATT
CGTTCGATTTTCGAGTTGATCGACTGGTTGTTGATTGTTTATCGAAGAAT
TTGAAGGATCCGATTTTGAAAAGTTTGTGAGTTAGTGATTTAATGATTTA
TCTTTGCAGAAAGATCTATAATGTTTGTTTTAAAATTTACTTTGTGTCTC
AATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001556XLOC_001556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002853-exon-sc0000023-1575043694:206457..207264TCONS_00002853-exon-sc0000023-1575043694:206457..207264Clytia hemisphaericaexon
TCONS_00002853-exon-sc0000023-1510915933:206457..207264TCONS_00002853-exon-sc0000023-1510915933:206457..207264Clytia hemisphaericaexon
TCONS_00002853-exon-sc0000023-1491911889:206457..207264TCONS_00002853-exon-sc0000023-1491911889:206457..207264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:206457..207264 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.48542	2.05602	3.15644	2.57458	0.143083	0.377598	0.923778	0.682936	0.646013	0.379867	0.58016	1.11934	1.56378	2.25238	1.53452	2.47807	1.40669	0.840889	0.111987	0.480705	0.878406	0.682974	3.67297	2.38888	0.325281	0.736134	0.234384	0	1.67211	0.990538
Blast
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BLAST of TCONS_00002853 vs. Swiss-Prot (Human)
Match: GCNT7 (Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 OS=Homo sapiens GN=GCNT7 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 9.157e-27
Identity = 69/231 (29.87%), Postives = 110/231 (47.62%), Query Frame = 2 
Query:   32 WKYGINLPSTVFPLYNHSKIVHYLRSKPYDVSINWKSPNEAHFMSRVQFVHVARSIEGGDRALVRTSKRKGPPPHGIKIYRKGTSFIGTRQFYDFLVNDPLAKQFLDWTRDTKNPEDFYYASLYKHRTREPWSSPDFDISGLISGYKVRPEHELQDVSVDPENNLLISLWGSDRGHRCHGKYRGSVCILGSADLKWLLQQGYLFANSFDFRVDRLVVDCLSKNLKDPILKS 724
            W Y INL    FP+  + +I+HY+RSK  D +I        H  S+    H+    +G   A    ++ K  PPH + IY     ++ TR+F +F++ D  AK  L W++D ++PE  Y+ +L + +   P ++P+    G +   K + E          E N+            C G+Y   +C+ G  DL WL+Q   LFAN F+   D LVV CL +  +  +L+ 
Sbjct:  198 WNYVINLCGQDFPIKTNREIIHYIRSKWSDKNITPGVIQPLHIKSKTSQSHLEFVPKGSIYA-PPNNRFKDKPPHNLTIYFGSAYYVLTRKFVEFILTDIHAKDMLQWSKDIRSPEQHYWVTLNRLKD-APGATPNAGWEGNVRAIKRKSE----------EGNV---------HDGCKGRYVEDICVYGPGDLPWLIQSPSLFANKFEPSTDPLVVTCLERRHRLQVLRQ 407
The following BLAST results are available for this feature:
BLAST of TCONS_00002853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GCNT79.157e-2729.87Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1... [more]
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