TCONS_00002843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002843
Unique NameTCONS_00002843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002843 ID=TCONS_00002843|Name=TCONS_00002843|organism=Clytia hemisphaerica|type=transcript|length=601bp
NGACAAAGTTGATGAAGAATATAAAGATATTGAGGTTACAACAAAGagag
cTGAACATCAAATGAGTGGAGGAAAGGAAAATTGGATAAATGCAGATGAA
AACATCCAGATGACTGATCACCAAATGGACCAAGAAAGTGAAAGCGAGAT
AACTCCAGATGAAGAAATTGAAGACATCGAGaCCACTGGAGCACGAAAAA
GATTCAGATGGACAATCAAAGAGGATCCTTCAAAAGACggcaaacaaaaa
caaattgacAGGCTCAAAAGAGTAAATGCAAGCCAAGCTTATACAATCGA
CTTactcaaagaaaaaaatgcttCTTTGACTCTGCGAAATGCTAATTACA
CGCATTTGAGAATGCTCGAGCAGTTAGGAGAAACACGCTCTTCGTTAATG
GTAGACGCCTCCCTTTTCTCCAACTCGTTTCATTCTGGTGATGCCATCTT
ACAGCAGCAAAGTTCAGATATTCTTGACCCTTCGACTTTTCAGGATTTAG
CAGTAAAAATATTACCCTGTGGTACTTTTTCTTCCATCAAAAAATTATCC
TTTTCAACCAAAGAATCTGTAATATTGAAAACTCTGAAACCAGATAGTTT
T
Run BLAST on NCBI

transcript from alignment at sc0000023:1031957..1033290+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002843 ID=TCONS_00002843|Name=TCONS_00002843|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at sc0000023:1031957..1033290+ (Clytia hemisphaerica)
NGACAAAGTTGATGAAGAATATAAAGATATTGAGGTTACAACAAAGGTTG
AAATAGTTCTATTCTCCTTTAAACAAAACTATTACAAATACAGTACACTT
TGCCAAAACTAAATTTAAACATATCTAAGATATTTGCTTATATGCTTTCA
AGGCATTTTCATACTTATTTTAATCATTTATGAAAAAACTTTAACTTTGa
gccctttttttaaagagagcTGAACATCAAATGAGTGGAGGAAAGGAAAA
TTGGATAAATGCAGATGAAAACATCCAGGTTATATCTAAGCTTATTGGTT
TTAttctcttttaaaaaatttcatttgataatgtttagcaaaaaaagttt
ttattaacAAACAATCTGTTTCTTTTCCATGCATTCAAAGGCATTCTTTG
TCttatttattgaattttgagcCTTTTTTATCTAAGATGACTGATCACCA
AATGGAccaagaaagtgaaagtgagaTAACTCCAGATGAAGAAATTGAAG
ACATCGAGGTTATTACCCACATNTTATTCATTGTCttatttattgaattt
tgagcCTTTTTTATCTAAGATGACTGATCACCAAATGGACCAAGAAAGTG
AAAGCGAGATAACTCCAGATGAAGAAATTGAAGACATCGAGGTTATTACC
CACCTATTATTCTTTTCTTGTCAAAGTTATTTATTGTTTAGAAATAGGCA
ATATTTCTATCATCGCGTTGAGGAAGATATGGCTGACCATGAGCTTGGTG
AACTAAACATCTAGCACTCAATGAGAACTGacataaaaaagcaaaaaata
attaatctCATGTTTCATGCTTTAGAGGCATATTTTATGTTGACAAGAGG
CAGGCAATTTGAGTTCAATATCTCATGCACATACAAAAGCATTaattaat
tttgcatttttaagaCCACTGGAGCACGAAAAAGATTCAGATGGACAATC
AAAGAGGATCCTTCAAAAGACggcaaacaaaaacaaattgacAGGCTCAA
AAGAGTAAATGCAAGCCAAGCTTATACAATCGACTTactcaaagaaaaaa
atgcttCTTTGACTCTGCGAAATGCTAATTACACGCATTTGAGAATGCTC
GAGCAGTTAGGAGAAACACGCTCTTCGTTAATGGTAGACGCCTCCCTTTT
CTCCAACTCGTTTCATTCTGGTGATGCCATCTTACAGCAGCAAAGTTCAG
ATATTCTTGACCCTTCGACTTTTCAGGATTTAGCAGTAAAAATATTACCC
TGTGGTACTTTTTCTTCCATCAAAAAATTATCCTTTTCAACCAAAGAATC
TGTAATATTGAAAACTCTGAAACCAGATAGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001550XLOC_001550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002843-exon-sc0000023-1491911889:1031957..1032002TCONS_00002843-exon-sc0000023-1491911889:1031957..1032002Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1510915933:1031957..1032002TCONS_00002843-exon-sc0000023-1510915933:1031957..1032002Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1575043694:1031957..1032002TCONS_00002843-exon-sc0000023-1575043694:1031957..1032002Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1491911889:1032172..1032234TCONS_00002843-exon-sc0000023-1491911889:1032172..1032234Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1510915933:1032172..1032234TCONS_00002843-exon-sc0000023-1510915933:1032172..1032234Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1575043694:1032172..1032234TCONS_00002843-exon-sc0000023-1575043694:1032172..1032234Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1491911889:1032526..1032597TCONS_00002843-exon-sc0000023-1491911889:1032526..1032597Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1510915933:1032526..1032597TCONS_00002843-exon-sc0000023-1510915933:1032526..1032597Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1575043694:1032526..1032597TCONS_00002843-exon-sc0000023-1575043694:1032526..1032597Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1491911889:1032871..1033290TCONS_00002843-exon-sc0000023-1491911889:1032871..1033290Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1510915933:1032871..1033290TCONS_00002843-exon-sc0000023-1510915933:1032871..1033290Clytia hemisphaericaexon
TCONS_00002843-exon-sc0000023-1575043694:1032871..1033290TCONS_00002843-exon-sc0000023-1575043694:1032871..1033290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:1031957..1033290 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0873921	0.16975	0.198899	0.288633	5.93508	4.61913e-05	4.15824e-08	8.16995	3.73705	1.19371	2.04825	0	1.15164	0	0	0	0	0	0	0	0.510099	0	3.3137	0	3.12724	7.95181	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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