TCONS_00002842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002842
Unique NameTCONS_00002842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002842 ID=TCONS_00002842|Name=TCONS_00002842|organism=Clytia hemisphaerica|type=transcript|length=602bp
NNGACAAAGTTGATGAAGAATATAAAGATATTGAGGTTACAACAAAGaga
gcTGAACATCAAATGAGTGGAGGAAAGGAAAATTGGATAAATGCAGATGA
AAACATCCAGATGACTGATCACCAAATGGAccaagaaagtgaaagtgaga
TAACTCCAGATGAAGAAATTGAAGACATCGAGaCCACTGGAGCACGAAAA
AGATTCAGATGGACAATCAAAGAGGATCCTTCAAAAGACggcaaacaaaa
acaaattgacAGGCTCAAAAGAGTAAATGCAAGCCAAGCTTATACAATCG
ACTTactcaaagaaaaaaatgcttCTTTGACTCTGCGAAATGCTAATTAC
ACGCATTTGAGAATGCTCGAGCAGTTAGGAGAAACACGCTCTTCGTTAAT
GGTAGACGCCTCCCTTTTCTCCAACTCGTTTCATTCTGGTGATGCCATCT
TACAGCAGCAAAGTTCAGATATTCTTGACCCTTCGACTTTTCAGGATTTA
GCAGTAAAAATATTACCCTGTGGTACTTTTTCTTCCATCAAAAAATTATC
CTTTTCAACCAAAGAATCTGTAATATTGAAAACTCTGAAACCAGATAGTT
TT
Run BLAST on NCBI

protein sequence of TCONS_00002842-protein

>TCONS_00002842-protein ID=TCONS_00002842-protein|Name=TCONS_00002842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
DKVDEEYKDIEVTTKRAEHQMSGGKENWINADENIQMTDHQMDQESESEI
TPDEEIEDIETTGARKRFRWTIKEDPSKDGKQKQIDRLKRVNASQAYTID
LLKEKNASLTLRNANYTHLRMLEQLGETRSSLMVDASLFSNSFHSGDAIL
QQQSSDILDPSTFQDLAVKILPCGTFSSIKKLSFSTKESVILKTLKPDSF
Run BLAST on NCBI

transcript from alignment at sc0000023:1031956..1033290+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002842 ID=TCONS_00002842|Name=TCONS_00002842|organism=Clytia hemisphaerica|type=transcript|length=1335bp|location=Sequence derived from alignment at sc0000023:1031956..1033290+ (Clytia hemisphaerica)
NNGACAAAGTTGATGAAGAATATAAAGATATTGAGGTTACAACAAAGGTT
GAAATAGTTCTATTCTCCTTTAAACAAAACTATTACAAATACAGTACACT
TTGCCAAAACTAAATTTAAACATATCTAAGATATTTGCTTATATGCTTTC
AAGGCATTTTCATACTTATTTTAATCATTTATGAAAAAACTTTAACTTTG
agccctttttttaaagagagcTGAACATCAAATGAGTGGAGGAAAGGAAA
ATTGGATAAATGCAGATGAAAACATCCAGGTTATATCTAAGCTTATTGGT
TTTAttctcttttaaaaaatttcatttgataatgtttagcaaaaaaagtt
tttattaacAAACAATCTGTTTCTTTTCCATGCATTCAAAGGCATTCTTT
GTCttatttattgaattttgagcCTTTTTTATCTAAGATGACTGATCACC
AAATGGAccaagaaagtgaaagtgagaTAACTCCAGATGAAGAAATTGAA
GACATCGAGGTTATTACCCACATNTTATTCATTGTCttatttattgaatt
ttgagcCTTTTTTATCTAAGATGACTGATCACCAAATGGACCAAGAAAGT
GAAAGCGAGATAACTCCAGATGAAGAAATTGAAGACATCGAGGTTATTAC
CCACCTATTATTCTTTTCTTGTCAAAGTTATTTATTGTTTAGAAATAGGC
AATATTTCTATCATCGCGTTGAGGAAGATATGGCTGACCATGAGCTTGGT
GAACTAAACATCTAGCACTCAATGAGAACTGacataaaaaagcaaaaaat
aattaatctCATGTTTCATGCTTTAGAGGCATATTTTATGTTGACAAGAG
GCAGGCAATTTGAGTTCAATATCTCATGCACATACAAAAGCATTaattaa
ttttgcatttttaagaCCACTGGAGCACGAAAAAGATTCAGATGGACAAT
CAAAGAGGATCCTTCAAAAGACggcaaacaaaaacaaattgacAGGCTCA
AAAGAGTAAATGCAAGCCAAGCTTATACAATCGACTTactcaaagaaaaa
aatgcttCTTTGACTCTGCGAAATGCTAATTACACGCATTTGAGAATGCT
CGAGCAGTTAGGAGAAACACGCTCTTCGTTAATGGTAGACGCCTCCCTTT
TCTCCAACTCGTTTCATTCTGGTGATGCCATCTTACAGCAGCAAAGTTCA
GATATTCTTGACCCTTCGACTTTTCAGGATTTAGCAGTAAAAATATTACC
CTGTGGTACTTTTTCTTCCATCAAAAAATTATCCTTTTCAACCAAAGAAT
CTGTAATATTGAAAACTCTGAAACCAGATAGTTTT

Coding sequence (CDS) from alignment at sc0000023:1031956..1033290+

>TCONS_00002842 ID=TCONS_00002842|Name=TCONS_00002842|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at sc0000023:1031956..1033290+ (Clytia hemisphaerica)
GACAAAGTTGATGAAGAATATAAAGATATTGAGGTTACAACAAAGagagc
TGAACATCAAATGAGTGGAGGAAAGGAAAATTGGATAAATGCAGATGAAA
ACATCCAGATGACTGATCACCAAATGGAccaagaaagtgaaagtgagaTA
ACTCCAGATGAAGAAATTGAAGACATCGAGaCCACTGGAGCACGAAAAAG
ATTCAGATGGACAATCAAAGAGGATCCTTCAAAAGACggcaaacaaaaac
aaattgacAGGCTCAAAAGAGTAAATGCAAGCCAAGCTTATACAATCGAC
TTactcaaagaaaaaaatgcttCTTTGACTCTGCGAAATGCTAATTACAC
GCATTTGAGAATGCTCGAGCAGTTAGGAGAAACACGCTCTTCGTTAATGG
TAGACGCCTCCCTTTTCTCCAACTCGTTTCATTCTGGTGATGCCATCTTA
CAGCAGCAAAGTTCAGATATTCTTGACCCTTCGACTTTTCAGGATTTAGC
AGTAAAAATATTACCCTGTGGTACTTTTTCTTCCATCAAAAAATTATCCT
TTTCAACCAAAGAATCTGTAATATTGAAAACTCTGAAACCAGATAGTTTT
GACAAAGTTGATGAAGAATATAAAGATATTGAGGTTACAACAAAGagagc
TGAACATCAAATGAGTGGAGGAAAGGAAAATTGGATAAATGCAGATGAAA
ACATCCAGATGACTGATCACCAAATGGAccaagaaagtgaaagtgagaTA
ACTCCAGATGAAGAAATTGAAGACATCGAGaCCACTGGAGCACGAAAAAG
ATTCAGATGGACAATCAAAGAGGATCCTTCAAAAGACggcaaacaaaaac
aaattgacAGGCTCAAAAGAGTAAATGCAAGCCAAGCTTATACAATCGAC
TTactcaaagaaaaaaatgcttCTTTGACTCTGCGAAATGCTAATTACAC
GCATTTGAGAATGCTCGAGCAGTTAGGAGAAACACGCTCTTCGTTAATGG
TAGACGCCTCCCTTTTCTCCAACTCGTTTCATTCTGGTGATGCCATCTTA
CAGCAGCAAAGTTCAGATATTCTTGACCCTTCGACTTTTCAGGATTTAGC
AGTAAAAATATTACCCTGTGGTACTTTTTCTTCCATCAAAAAATTATCCT
TTTCAACCAAAGAATCTGTAATATTGAAAACTCTGAAACCAGATAGTTTT
GACAAAGTTGATGAAGAATATAAAGATATTGAGGTTACAACAAAGagagc
TGAACATCAAATGAGTGGAGGAAAGGAAAATTGGATAAATGCAGATGAAA
ACATCCAGATGACTGATCACCAAATGGAccaagaaagtgaaagtgagaTA
ACTCCAGATGAAGAAATTGAAGACATCGAGaCCACTGGAGCACGAAAAAG
ATTCAGATGGACAATCAAAGAGGATCCTTCAAAAGACggcaaacaaaaac
aaattgacAGGCTCAAAAGAGTAAATGCAAGCCAAGCTTATACAATCGAC
TTactcaaagaaaaaaatgcttCTTTGACTCTGCGAAATGCTAATTACAC
GCATTTGAGAATGCTCGAGCAGTTAGGAGAAACACGCTCTTCGTTAATGG
TAGACGCCTCCCTTTTCTCCAACTCGTTTCATTCTGGTGATGCCATCTTA
CAGCAGCAAAGTTCAGATATTCTTGACCCTTCGACTTTTCAGGATTTAGC
AGTAAAAATATTACCCTGTGGTACTTTTTCTTCCATCAAAAAATTATCCT
TTTCAACCAAAGAATCTGTAATATTGAAAACTCTGAAACCAGATAGTTTT
GACAAAGTTGATGAAGAATATAAAGATATTGAGGTTACAACAAAGagagc
TGAACATCAAATGAGTGGAGGAAAGGAAAATTGGATAAATGCAGATGAAA
ACATCCAGATGACTGATCACCAAATGGAccaagaaagtgaaagtgagaTA
ACTCCAGATGAAGAAATTGAAGACATCGAGaCCACTGGAGCACGAAAAAG
ATTCAGATGGACAATCAAAGAGGATCCTTCAAAAGACggcaaacaaaaac
aaattgacAGGCTCAAAAGAGTAAATGCAAGCCAAGCTTATACAATCGAC
TTactcaaagaaaaaaatgcttCTTTGACTCTGCGAAATGCTAATTACAC
GCATTTGAGAATGCTCGAGCAGTTAGGAGAAACACGCTCTTCGTTAATGG
TAGACGCCTCCCTTTTCTCCAACTCGTTTCATTCTGGTGATGCCATCTTA
CAGCAGCAAAGTTCAGATATTCTTGACCCTTCGACTTTTCAGGATTTAGC
AGTAAAAATATTACCCTGTGGTACTTTTTCTTCCATCAAAAAATTATCCT
TTTCAACCAAAGAATCTGTAATATTGAAAACTCTGAAACCAGATAGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001550XLOC_001550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002842-exon-sc0000023-1491911889:1031956..1032002TCONS_00002842-exon-sc0000023-1491911889:1031956..1032002Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1510915933:1031956..1032002TCONS_00002842-exon-sc0000023-1510915933:1031956..1032002Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1575043694:1031956..1032002TCONS_00002842-exon-sc0000023-1575043694:1031956..1032002Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1491911889:1032172..1032234TCONS_00002842-exon-sc0000023-1491911889:1032172..1032234Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1510915933:1032172..1032234TCONS_00002842-exon-sc0000023-1510915933:1032172..1032234Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1575043694:1032172..1032234TCONS_00002842-exon-sc0000023-1575043694:1032172..1032234Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1491911889:1032393..1032464TCONS_00002842-exon-sc0000023-1491911889:1032393..1032464Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1510915933:1032393..1032464TCONS_00002842-exon-sc0000023-1510915933:1032393..1032464Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1575043694:1032393..1032464TCONS_00002842-exon-sc0000023-1575043694:1032393..1032464Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1491911889:1032871..1033290TCONS_00002842-exon-sc0000023-1491911889:1032871..1033290Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1510915933:1032871..1033290TCONS_00002842-exon-sc0000023-1510915933:1032871..1033290Clytia hemisphaericaexon
TCONS_00002842-exon-sc0000023-1575043694:1032871..1033290TCONS_00002842-exon-sc0000023-1575043694:1032871..1033290Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002842-proteinTCONS_00002842-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:1031956..1033290 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00310441	0.0067453	0.00603306	0.0120997	5.28008	8.75419	6.73158	1.34596e-09	0	5.78218	2.98726	3.24659	3.29414	3.99044	2.25547	11.6072	4.13388	3.95925	3.45468	3.31382	0.0148923	0.766317	0.110448	4.32871	2.88997	0.286092	1.60919	1.18895	20.7408	12.6586
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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