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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002840 ID=TCONS_00002840|Name=TCONS_00002840|organism=Clytia hemisphaerica|type=transcript|length=2493bp
ATTATGCGTTTGACCAAATATGGAGTCTAATTTATTATGAATGGCGCGTA
TTTATGTTCGATTTCAGCCCTTCAATGTTCACAGTCACAAATCTTTGAGT
TGGTAACCAGTAACTTGTTCGTGTTAAAAAACCCTAAACATCTCCACAAT
GGCTGATCAACTGACTGAAGAACAAATCGCTGAATTCAAAGAAGCTTTCT
CCCTATTCGACAAAGACGGAGATGGCACCATCACAACCAAAGAATTGGGA
ACTGTCATGAGAAGTTTAGGACAAAACCCAACTGAAGCTGAACTCCAAGA
CATGATCAATGAAGTTGATGCTGACGGTAACGGTACTATTGACTTTCCAG
AATTTTTAACCATGATGGCACGAAAAATGAAAGACACTGATTCTGAAGNa
tttcatacccttacagtgcactagctgaactatgaaaaacctacccttaa
gggccgaacgtctggtaggtcatttaccttgagtgccccccccggggtta
ACATATTCCATCGCTGAGTAAAGCTAAAGTTGAAAAGTTGTTATTGACAT
TTTACAAAGAGTGGAAAGTTGGTAACGCCCCTTTCTGGACTTCAGTTGTT
AAAGACTGATTTTCTCTTCCATAGGCTGATCAACTGACTGAAGAACAAAT
TGCTGAATTCAAAGAAGCTTTCTCCCTATTCGACAAAGACGGAGATGGCA
CCATCACAACCAAAGAATTGGGAACTGTCATGAGAAGTTTAGGACAAAAC
CCAACTGAAGCTGAACTCCAAGACATGATCAATGAAGTTGATGCTGACGG
TAACGGTACTATTGACTTTCCAGAATTTTTAACCATGATGGCACGAAAAA
TGAAAGACACTGATTCTgaagaagaaatcaaagaagCTTTCAGAGTTTTC
GATAAAGACGGCAATGGTTTCATCAGTGCTGCTGAATTACGACATGTCAT
GACCAACTTAGGAGAAAAACTTACAGATGAAGAGGTCGACGAAATGATCC
GTGAAGCTGATATTGATGGAGACGGTCAAGTAAACTATGAAGAATTCGTC
AAGATGATGATGTCTAAGTAAATGGGGTTAACCAAGTGATTCTGGTGATA
CTTGTGTAAATATTGTAATAAATCTGTTGAATGCATACAGTTCATCCACC
AACCACTACGTCATGATCAGACACGAACATTGATAGAGAGAATAAAATAT
CGGGAAAAATGGGATAACAAAGTTTTTAACATTTGCCTGTAAAATGGGAG
ATCTAATATTTATTGTTcttaaataaattcaaattttaatataatttaCT
TGCTCCCTGATTTTGTGCCTGTTGACCTTGTTCTTCGGGGGTTATTGTGC
TAGTCCCCATGCACCTGCTGTTCTGGTACATTCTTTTTGACAATGTATGA
GAAATATCCCAAGGTTTTAATGACAGGTTAACAAATGGCACACTTTTTTG
ACCTACCTAGAGGTCCTTTATTAATCAatccttgtttgtttgttaccagc
ttttttTATAGGGATCAAATTAGGATTTATCTTATTTAAGTGTATTGATC
CCTGAAGCTCATTTTTACATATGAAATTCAAGGCAGCTTCTGGCAGCTTA
GTTAATTTCTAATACACCGGTTGCAAAATTGtatcgaaaaagttcacgtg
attttatttccATGTTATCTGTTTTACAACTTATTGTAGGAGGAAGTTTG
TCGTATTTTGAGGTCGATTGTTTTGGTAAAAGCGCTTGTTATaaattttt
gctatgctataaAGGGGTATGGggatcaaaataacttgggtgccgaTTTT
TTTCTGACACTTTGTGATTTTCaaacaaatatgacggtctcaggcaaaaa
ttatagggtcaaaaattaattaattattttaaCTTGAGAGAATAGTTCTG
TTCCTGTTCTATATTTTCGGAAAGCtctataaaaatttaaattagtgata
tattgcgagtatagatgatttcagtacctaactcgagacaTTGAGCAtta
aacagctgtttctggctgaaaaataatgtttttaaggGTAAATATGTCAT
ACTTGCAgtacattgggctcttccagaaaaaaaccattcatgggggtgga
ggatatcgTAGATACTAAACCCCGAAACGGGTGGGAAACGAAtgcaaacg
ggtggaaacgagtggcgaaacgggtggaaaggaatgaaaaacaactggaa
acacatgaaaacgagtggaaacgagtgcTAGGGGTTCATATCAaactaat
aaatttttttcaaatgcttCTTAAAACATTGTTAAAAACAGAACGCTGCT
TTGATAACAGAATGGAAGCGATTTTCTTTTTGGTAGTAAGTAAGCAgctt
attttcatttgaaaccaaatccagtatttcagatacttttgtgttttgat
gttATATGTTTTTTATGGTTGGATTTTTATGACAAAGAAACACGGTTGTT
GCTGCAAAGCATATATTCTTGATATTTCCTTAGGATGTGAATG Run BLAST on NCBI transcript from alignment at sc0000023:911932..914858+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002840 ID=TCONS_00002840|Name=TCONS_00002840|organism=Clytia hemisphaerica|type=transcript|length=2927bp|location=Sequence derived from alignment at sc0000023:911932..914858+ (Clytia hemisphaerica)
ATTATGCGTTTGACCAAATATGGAGTCTAATTTATTATGAATGGCGCGTA
TTTATGTTCGATTTCAGCCCTTCAATGTTCACAGTCACAAATCTTTGAGT
TGGTAACCAGTAACTTGTTCGTGTTAAAAAACCCTAAACATCTCCACAAT
GGTAAGAGTATTAATTTGTCTTAGCTACTTAAgttccaaaatatttgatt
gataTTGTGATCATCTCGATTAGTTAACATATTCCATCGCTGAGTAAAGC
TAAAGTTGAAAAGTTGTTATTGACATTTTACAAAGAGTGGAAAGTTGGTA
ACGCCCCTTTCTGGACTTCAGTTGTTAAAGACTGATTTTCTCTTCCATAG
GCTGATCAACTGACTGAAGAACAAATCGCTGAATTCAAAGAAGCTTTCTC
CCTATTCGACAAAGACGGAGATGGCACCATCACAACCAAAGAATTGGGAA
CTGTCATGAGAAGTTTAGGACAAAACCCAACTGAAGCTGAACTCCAAGAC
ATGATCAATGAAGTTGATGCTGACGGTAACGGTACTATTGACTTTCCAGA
ATTTTTAACCATGATGGCACGAAAAATGAAAGACACTGATTCTGAAGNat
ttcatacccttacagtgcactagctgaactatgaaaaacctacccttaag
ggccgaacgtctggtaggtcatttaccttgagtgccccccccggggttaA
CATATTCCATCGCTGAGTAAAGCTAAAGTTGAAAAGTTGTTATTGACATT
TTACAAAGAGTGGAAAGTTGGTAACGCCCCTTTCTGGACTTCAGTTGTTA
AAGACTGATTTTCTCTTCCATAGGCTGATCAACTGACTGAAGAACAAATT
GCTGAATTCAAAGAAGCTTTCTCCCTATTCGACAAAGACGGAGATGGCAC
CATCACAACCAAAGAATTGGGAACTGTCATGAGAAGTTTAGGACAAAACC
CAACTGAAGCTGAACTCCAAGACATGATCAATGAAGTTGATGCTGACGGT
AACGGTACTATTGACTTTCCAGAATTTTTAACCATGATGGCACGAAAAAT
GAAAGACACTGATTCTgaagaagaaatcaaagaagCTTTCAGAGTTTTCG
ATAAAGACGGCAATGGTTTCATCAGTGCTGCTGAATTACGACATGTCATG
ACCAACTTAGGAGAAAAACTTACAGATGAAGAGGTCGACGAAATGATCCG
TGAAGCTGATATTGATGGAGACGGTCAAGTAAACTATGAAGGTAAATATA
TATTCTTTCCTGAAACTCATTTTACTTTGGTGAATTTTCTGGCATTTGAT
TTTCTACCATATTGCTCAAATGTAACAACACTCAATACAAATATCTGTGA
CTGGGCCAGCAATCTTGTATGAAAAGTACTTATTTGTGAAACATGATTAC
ACATGTTCAGGTTTTATGAAATGATATTACCTCACTACTAGCATTGACTT
AAAATACCTTTCAATTTCCTTTTTAGAATTCGTCAAGATGATGATGTCTA
AGTAAATGGGGTTAACCAAGTGATTCTGGTGATACTTGTGTAAATATTGT
AATAAATCTGTTGAATGCATACAGTTCATCCACCAACCACTACGTCATGA
TCAGACACGAACATTGATAGAGAGAATAAAATATCGGGAAAAATGGGATA
ACAAAGTTTTTAACATTTGCCTGTAAAATGGGAGATCTAATATTTATTGT
TcttaaataaattcaaattttaatataatttaCTTGCTCCCTGATTTTGT
GCCTGTTGACCTTGTTCTTCGGGGGTTATTGTGCTAGTCCCCATGCACCT
GCTGTTCTGGTACATTCTTTTTGACAATGTATGAGAAATATCCCAAGGTT
TTAATGACAGGTTAACAAATGGCACACTTTTTTGACCTACCTAGAGGTCC
TTTATTAATCAatccttgtttgtttgttaccagcttttttTATAGGGATC
AAATTAGGATTTATCTTATTTAAGTGTATTGATCCCTGAAGCTCATTTTT
ACATATGAAATTCAAGGCAGCTTCTGGCAGCTTAGTTAATTTCTAATACA
CCGGTTGCAAAATTGtatcgaaaaagttcacgtgattttatttccATGTT
ATCTGTTTTACAACTTATTGTAGGAGGAAGTTTGTCGTATTTTGAGGTCG
ATTGTTTTGGTAAAAGCGCTTGTTATaaatttttgctatgctataaAGGG
GTATGGggatcaaaataacttgggtgccgaTTTTTTTCTGACACTTTGTG
ATTTTCaaacaaatatgacggtctcaggcaaaaattatagggtcaaaaat
taattaattattttaaCTTGAGAGAATAGTTCTGTTCCTGTTCTATATTT
TCGGAAAGCtctataaaaatttaaattagtgatatattgcgagtatagat
gatttcagtacctaactcgagacaTTGAGCAttaaacagctgtttctggc
tgaaaaataatgtttttaaggGTAAATATGTCATACTTGCAgtacattgg
gctcttccagaaaaaaaccattcatgggggtggaggatatcgTAGATACT
AAACCCCGAAACGGGTGGGAAACGAAtgcaaacgggtggaaacgagtggc
gaaacgggtggaaaggaatgaaaaacaactggaaacacatgaaaacgagt
ggaaacgagtgcTAGGGGTTCATATCAaactaataaatttttttcaaatg
cttCTTAAAACATTGTTAAAAACAGAACGCTGCTTTGATAACAGAATGGA
AGCGATTTTCTTTTTGGTAGTAAGTAAGCAgcttattttcatttgaaacc
aaatccagtatttcagatacttttgtgttttgatgttATATGTTTTTTAT
GGTTGGATTTTTATGACAAAGAAACACGGTTGTTGCTGCAAAGCATATAT
TCTTGATATTTCCTTAGGATGTGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002840-exon-sc0000023-1491911889:911932..912082 | TCONS_00002840-exon-sc0000023-1491911889:911932..912082 | Clytia hemisphaerica | exon |
| TCONS_00002840-exon-sc0000023-1510915933:911932..912082 | TCONS_00002840-exon-sc0000023-1510915933:911932..912082 | Clytia hemisphaerica | exon |
| TCONS_00002840-exon-sc0000023-1575043694:911932..912082 | TCONS_00002840-exon-sc0000023-1575043694:911932..912082 | Clytia hemisphaerica | exon |
| TCONS_00002840-exon-sc0000023-1491911889:912282..913172 | TCONS_00002840-exon-sc0000023-1491911889:912282..913172 | Clytia hemisphaerica | exon |
| TCONS_00002840-exon-sc0000023-1510915933:912282..913172 | TCONS_00002840-exon-sc0000023-1510915933:912282..913172 | Clytia hemisphaerica | exon |
| TCONS_00002840-exon-sc0000023-1575043694:912282..913172 | TCONS_00002840-exon-sc0000023-1575043694:912282..913172 | Clytia hemisphaerica | exon |
| TCONS_00002840-exon-sc0000023-1491911889:913408..914858 | TCONS_00002840-exon-sc0000023-1491911889:913408..914858 | Clytia hemisphaerica | exon |
| TCONS_00002840-exon-sc0000023-1510915933:913408..914858 | TCONS_00002840-exon-sc0000023-1510915933:913408..914858 | Clytia hemisphaerica | exon |
| TCONS_00002840-exon-sc0000023-1575043694:913408..914858 | TCONS_00002840-exon-sc0000023-1575043694:913408..914858 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023 | supercontig | sc0000023:911932..914858 + |
Blast
BLAST of TCONS_00002840 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 5.448e-92 Identity = 143/148 (96.62%), Postives = 147/148 (99.32%), Query Frame = 1
Query: 625 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMMSK 1068
ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI+EAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV+MM +K
Sbjct: 2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149 HSP 2 Score: 167.548 bits (423), Expect = 1.346e-47 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 2
Query: 149 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 397
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
The following BLAST results are available for this feature:
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