TCONS_00002840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002840
Unique NameTCONS_00002840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002840 ID=TCONS_00002840|Name=TCONS_00002840|organism=Clytia hemisphaerica|type=transcript|length=2493bp
ATTATGCGTTTGACCAAATATGGAGTCTAATTTATTATGAATGGCGCGTA
TTTATGTTCGATTTCAGCCCTTCAATGTTCACAGTCACAAATCTTTGAGT
TGGTAACCAGTAACTTGTTCGTGTTAAAAAACCCTAAACATCTCCACAAT
GGCTGATCAACTGACTGAAGAACAAATCGCTGAATTCAAAGAAGCTTTCT
CCCTATTCGACAAAGACGGAGATGGCACCATCACAACCAAAGAATTGGGA
ACTGTCATGAGAAGTTTAGGACAAAACCCAACTGAAGCTGAACTCCAAGA
CATGATCAATGAAGTTGATGCTGACGGTAACGGTACTATTGACTTTCCAG
AATTTTTAACCATGATGGCACGAAAAATGAAAGACACTGATTCTGAAGNa
tttcatacccttacagtgcactagctgaactatgaaaaacctacccttaa
gggccgaacgtctggtaggtcatttaccttgagtgccccccccggggtta
ACATATTCCATCGCTGAGTAAAGCTAAAGTTGAAAAGTTGTTATTGACAT
TTTACAAAGAGTGGAAAGTTGGTAACGCCCCTTTCTGGACTTCAGTTGTT
AAAGACTGATTTTCTCTTCCATAGGCTGATCAACTGACTGAAGAACAAAT
TGCTGAATTCAAAGAAGCTTTCTCCCTATTCGACAAAGACGGAGATGGCA
CCATCACAACCAAAGAATTGGGAACTGTCATGAGAAGTTTAGGACAAAAC
CCAACTGAAGCTGAACTCCAAGACATGATCAATGAAGTTGATGCTGACGG
TAACGGTACTATTGACTTTCCAGAATTTTTAACCATGATGGCACGAAAAA
TGAAAGACACTGATTCTgaagaagaaatcaaagaagCTTTCAGAGTTTTC
GATAAAGACGGCAATGGTTTCATCAGTGCTGCTGAATTACGACATGTCAT
GACCAACTTAGGAGAAAAACTTACAGATGAAGAGGTCGACGAAATGATCC
GTGAAGCTGATATTGATGGAGACGGTCAAGTAAACTATGAAGAATTCGTC
AAGATGATGATGTCTAAGTAAATGGGGTTAACCAAGTGATTCTGGTGATA
CTTGTGTAAATATTGTAATAAATCTGTTGAATGCATACAGTTCATCCACC
AACCACTACGTCATGATCAGACACGAACATTGATAGAGAGAATAAAATAT
CGGGAAAAATGGGATAACAAAGTTTTTAACATTTGCCTGTAAAATGGGAG
ATCTAATATTTATTGTTcttaaataaattcaaattttaatataatttaCT
TGCTCCCTGATTTTGTGCCTGTTGACCTTGTTCTTCGGGGGTTATTGTGC
TAGTCCCCATGCACCTGCTGTTCTGGTACATTCTTTTTGACAATGTATGA
GAAATATCCCAAGGTTTTAATGACAGGTTAACAAATGGCACACTTTTTTG
ACCTACCTAGAGGTCCTTTATTAATCAatccttgtttgtttgttaccagc
ttttttTATAGGGATCAAATTAGGATTTATCTTATTTAAGTGTATTGATC
CCTGAAGCTCATTTTTACATATGAAATTCAAGGCAGCTTCTGGCAGCTTA
GTTAATTTCTAATACACCGGTTGCAAAATTGtatcgaaaaagttcacgtg
attttatttccATGTTATCTGTTTTACAACTTATTGTAGGAGGAAGTTTG
TCGTATTTTGAGGTCGATTGTTTTGGTAAAAGCGCTTGTTATaaattttt
gctatgctataaAGGGGTATGGggatcaaaataacttgggtgccgaTTTT
TTTCTGACACTTTGTGATTTTCaaacaaatatgacggtctcaggcaaaaa
ttatagggtcaaaaattaattaattattttaaCTTGAGAGAATAGTTCTG
TTCCTGTTCTATATTTTCGGAAAGCtctataaaaatttaaattagtgata
tattgcgagtatagatgatttcagtacctaactcgagacaTTGAGCAtta
aacagctgtttctggctgaaaaataatgtttttaaggGTAAATATGTCAT
ACTTGCAgtacattgggctcttccagaaaaaaaccattcatgggggtgga
ggatatcgTAGATACTAAACCCCGAAACGGGTGGGAAACGAAtgcaaacg
ggtggaaacgagtggcgaaacgggtggaaaggaatgaaaaacaactggaa
acacatgaaaacgagtggaaacgagtgcTAGGGGTTCATATCAaactaat
aaatttttttcaaatgcttCTTAAAACATTGTTAAAAACAGAACGCTGCT
TTGATAACAGAATGGAAGCGATTTTCTTTTTGGTAGTAAGTAAGCAgctt
attttcatttgaaaccaaatccagtatttcagatacttttgtgttttgat
gttATATGTTTTTTATGGTTGGATTTTTATGACAAAGAAACACGGTTGTT
GCTGCAAAGCATATATTCTTGATATTTCCTTAGGATGTGAATG
Run BLAST on NCBI

transcript from alignment at sc0000023:911932..914858+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002840 ID=TCONS_00002840|Name=TCONS_00002840|organism=Clytia hemisphaerica|type=transcript|length=2927bp|location=Sequence derived from alignment at sc0000023:911932..914858+ (Clytia hemisphaerica)
ATTATGCGTTTGACCAAATATGGAGTCTAATTTATTATGAATGGCGCGTA
TTTATGTTCGATTTCAGCCCTTCAATGTTCACAGTCACAAATCTTTGAGT
TGGTAACCAGTAACTTGTTCGTGTTAAAAAACCCTAAACATCTCCACAAT
GGTAAGAGTATTAATTTGTCTTAGCTACTTAAgttccaaaatatttgatt
gataTTGTGATCATCTCGATTAGTTAACATATTCCATCGCTGAGTAAAGC
TAAAGTTGAAAAGTTGTTATTGACATTTTACAAAGAGTGGAAAGTTGGTA
ACGCCCCTTTCTGGACTTCAGTTGTTAAAGACTGATTTTCTCTTCCATAG
GCTGATCAACTGACTGAAGAACAAATCGCTGAATTCAAAGAAGCTTTCTC
CCTATTCGACAAAGACGGAGATGGCACCATCACAACCAAAGAATTGGGAA
CTGTCATGAGAAGTTTAGGACAAAACCCAACTGAAGCTGAACTCCAAGAC
ATGATCAATGAAGTTGATGCTGACGGTAACGGTACTATTGACTTTCCAGA
ATTTTTAACCATGATGGCACGAAAAATGAAAGACACTGATTCTGAAGNat
ttcatacccttacagtgcactagctgaactatgaaaaacctacccttaag
ggccgaacgtctggtaggtcatttaccttgagtgccccccccggggttaA
CATATTCCATCGCTGAGTAAAGCTAAAGTTGAAAAGTTGTTATTGACATT
TTACAAAGAGTGGAAAGTTGGTAACGCCCCTTTCTGGACTTCAGTTGTTA
AAGACTGATTTTCTCTTCCATAGGCTGATCAACTGACTGAAGAACAAATT
GCTGAATTCAAAGAAGCTTTCTCCCTATTCGACAAAGACGGAGATGGCAC
CATCACAACCAAAGAATTGGGAACTGTCATGAGAAGTTTAGGACAAAACC
CAACTGAAGCTGAACTCCAAGACATGATCAATGAAGTTGATGCTGACGGT
AACGGTACTATTGACTTTCCAGAATTTTTAACCATGATGGCACGAAAAAT
GAAAGACACTGATTCTgaagaagaaatcaaagaagCTTTCAGAGTTTTCG
ATAAAGACGGCAATGGTTTCATCAGTGCTGCTGAATTACGACATGTCATG
ACCAACTTAGGAGAAAAACTTACAGATGAAGAGGTCGACGAAATGATCCG
TGAAGCTGATATTGATGGAGACGGTCAAGTAAACTATGAAGGTAAATATA
TATTCTTTCCTGAAACTCATTTTACTTTGGTGAATTTTCTGGCATTTGAT
TTTCTACCATATTGCTCAAATGTAACAACACTCAATACAAATATCTGTGA
CTGGGCCAGCAATCTTGTATGAAAAGTACTTATTTGTGAAACATGATTAC
ACATGTTCAGGTTTTATGAAATGATATTACCTCACTACTAGCATTGACTT
AAAATACCTTTCAATTTCCTTTTTAGAATTCGTCAAGATGATGATGTCTA
AGTAAATGGGGTTAACCAAGTGATTCTGGTGATACTTGTGTAAATATTGT
AATAAATCTGTTGAATGCATACAGTTCATCCACCAACCACTACGTCATGA
TCAGACACGAACATTGATAGAGAGAATAAAATATCGGGAAAAATGGGATA
ACAAAGTTTTTAACATTTGCCTGTAAAATGGGAGATCTAATATTTATTGT
TcttaaataaattcaaattttaatataatttaCTTGCTCCCTGATTTTGT
GCCTGTTGACCTTGTTCTTCGGGGGTTATTGTGCTAGTCCCCATGCACCT
GCTGTTCTGGTACATTCTTTTTGACAATGTATGAGAAATATCCCAAGGTT
TTAATGACAGGTTAACAAATGGCACACTTTTTTGACCTACCTAGAGGTCC
TTTATTAATCAatccttgtttgtttgttaccagcttttttTATAGGGATC
AAATTAGGATTTATCTTATTTAAGTGTATTGATCCCTGAAGCTCATTTTT
ACATATGAAATTCAAGGCAGCTTCTGGCAGCTTAGTTAATTTCTAATACA
CCGGTTGCAAAATTGtatcgaaaaagttcacgtgattttatttccATGTT
ATCTGTTTTACAACTTATTGTAGGAGGAAGTTTGTCGTATTTTGAGGTCG
ATTGTTTTGGTAAAAGCGCTTGTTATaaatttttgctatgctataaAGGG
GTATGGggatcaaaataacttgggtgccgaTTTTTTTCTGACACTTTGTG
ATTTTCaaacaaatatgacggtctcaggcaaaaattatagggtcaaaaat
taattaattattttaaCTTGAGAGAATAGTTCTGTTCCTGTTCTATATTT
TCGGAAAGCtctataaaaatttaaattagtgatatattgcgagtatagat
gatttcagtacctaactcgagacaTTGAGCAttaaacagctgtttctggc
tgaaaaataatgtttttaaggGTAAATATGTCATACTTGCAgtacattgg
gctcttccagaaaaaaaccattcatgggggtggaggatatcgTAGATACT
AAACCCCGAAACGGGTGGGAAACGAAtgcaaacgggtggaaacgagtggc
gaaacgggtggaaaggaatgaaaaacaactggaaacacatgaaaacgagt
ggaaacgagtgcTAGGGGTTCATATCAaactaataaatttttttcaaatg
cttCTTAAAACATTGTTAAAAACAGAACGCTGCTTTGATAACAGAATGGA
AGCGATTTTCTTTTTGGTAGTAAGTAAGCAgcttattttcatttgaaacc
aaatccagtatttcagatacttttgtgttttgatgttATATGTTTTTTAT
GGTTGGATTTTTATGACAAAGAAACACGGTTGTTGCTGCAAAGCATATAT
TCTTGATATTTCCTTAGGATGTGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001548XLOC_001548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002840-exon-sc0000023-1491911889:911932..912082TCONS_00002840-exon-sc0000023-1491911889:911932..912082Clytia hemisphaericaexon
TCONS_00002840-exon-sc0000023-1510915933:911932..912082TCONS_00002840-exon-sc0000023-1510915933:911932..912082Clytia hemisphaericaexon
TCONS_00002840-exon-sc0000023-1575043694:911932..912082TCONS_00002840-exon-sc0000023-1575043694:911932..912082Clytia hemisphaericaexon
TCONS_00002840-exon-sc0000023-1491911889:912282..913172TCONS_00002840-exon-sc0000023-1491911889:912282..913172Clytia hemisphaericaexon
TCONS_00002840-exon-sc0000023-1510915933:912282..913172TCONS_00002840-exon-sc0000023-1510915933:912282..913172Clytia hemisphaericaexon
TCONS_00002840-exon-sc0000023-1575043694:912282..913172TCONS_00002840-exon-sc0000023-1575043694:912282..913172Clytia hemisphaericaexon
TCONS_00002840-exon-sc0000023-1491911889:913408..914858TCONS_00002840-exon-sc0000023-1491911889:913408..914858Clytia hemisphaericaexon
TCONS_00002840-exon-sc0000023-1510915933:913408..914858TCONS_00002840-exon-sc0000023-1510915933:913408..914858Clytia hemisphaericaexon
TCONS_00002840-exon-sc0000023-1575043694:913408..914858TCONS_00002840-exon-sc0000023-1575043694:913408..914858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:911932..914858 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
371.655	371.701	472.357	536.517	406.667	395.215	469.793	581.012	573.408	514.795	543.689	464.112	584.684	585.455	365.924	387.968	416.299	407.603	540.815	441.358	193.74	187.282	279.197	263.001	326.113	319.063	253.157	226.459	334.294	328.892
Blast
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BLAST of TCONS_00002840 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 5.448e-92
Identity = 143/148 (96.62%), Postives = 147/148 (99.32%), Query Frame = 1 
Query:  625 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMMSK 1068
            ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI+EAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV+MM +K
Sbjct:    2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 167.548 bits (423), Expect = 1.346e-47
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 2 
Query:  149 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 397
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
The following BLAST results are available for this feature:
BLAST of TCONS_00002840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM35.448e-9296.62Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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