|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002835 ID=TCONS_00002835|Name=TCONS_00002835|organism=Clytia hemisphaerica|type=transcript|length=3025bpRun BLAST on NCBI protein sequence of TCONS_00002835-protein >TCONS_00002835-protein ID=TCONS_00002835-protein|Name=TCONS_00002835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=819bp FQCAMMPQKTMKKSLSIADKVSSLNAVEGSINSPLHRFVRAKKKINQSFDRun BLAST on NCBI transcript from alignment at sc0000023:858591..874979+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002835 ID=TCONS_00002835|Name=TCONS_00002835|organism=Clytia hemisphaerica|type=transcript|length=16389bp|location=Sequence derived from alignment at sc0000023:858591..874979+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000023:858591..874979+ >TCONS_00002835 ID=TCONS_00002835|Name=TCONS_00002835|organism=Clytia hemisphaerica|type=CDS|length=49200bp|location=Sequence derived from alignment at sc0000023:858591..874979+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002835 vs. Swiss-Prot (Human)
Match: MFN2 (Mitofusin-2 OS=Homo sapiens GN=MFN2 PE=1 SV=3) HSP 1 Score: 694.886 bits (1792), Expect = 0.000e+0 Identity = 359/780 (46.03%), Postives = 507/780 (65.00%), Query Frame = 1
Query: 97 SPLHRFVRAKKKINQSFDEILDYLKESRRFLIDCEISNQYDG-ETKRDLKKVDNYLTQVVGIHEVLKRDHMKVAFFGRTSNGKSTVINAMLSERILPAGIGHTTNCFLSVNGADGNDAYIEDTSKNPPERNSVESLQQLAHALHNQK-LDSSSHLKVYWPTTKCPLLKDDVVFVDSPGVDVTPDLDTWIDTHCLDADVFVLVVNSESTINHTEKSFFHKVNSKLSKPNIFILNNRWDASAEGDPEMIKLVKQQHMERTSEFLVKELKCVSQAESADRIFFVSALETLRHRMSMKRSKMPQREPSIDENSDFDEAAYRMGKMARRQEFEDFENKFKECISKSAITTKFNGHTSTGITIAKEMVQIMEQILARASSHRSWCTAERQEQQETLDFINSKLEEVTEQIKNKIQNITEEVEMQVTKAMSDEIRRLGTLVGEFDYPFHPHSGFLRNYKKELHAYIEKGLGKNLKARCSQPLIESIDSYKSEMQDQIYSLIPTSACTSTITMSPRTNFAVSYELEVENLCSDFHEDITFKFTLGWTSLVNKFIAPRNPRLAMLLGAAVKQNMYYEPLKERRSLRTIPSEAKSIHMEEEDSEVVQSRYVRQESTNEEMIQTLSRQEEDQLTIAVIQGLSSLGSSTAMGLVVAGSLVWRTVGWKIIAGSAACYLAVYTYEKAMWTNAAKEKSFKKQFVEYASEKLQMVVSFTSKGCSHQIQQELSSTFAQLASMVDSAKAKVKSRIEELDEEIQTLKELETKAKLFKNKASWLENDFNAFTKEFNLTPA 2430
SPL FV AKKKIN F+++ Y++ES FL D + + D T+ + V YL++V GI EVL R HMKVAFFGRTSNGKSTVINAML +++LP+GIGHTTNCFL V G DG++A++ ++ E+ S +++ QLAHALH K L + S + V WP +KCPLLKDD+V +DSPG+DVT +LD+WID CLDADVFVLV NSEST+ TEK FFHKV+ +LS+PNIFILNNRWDASA +PE ++ V++QHMER + FLV EL V ++++ DRIFFVSA E L R+ K MP+ ++ E G R EF++FE +F+ECIS+SA+ TKF HT IA+ + IM+ + A + +C R+E+Q+ L FI+ +LE + + K +I+ ITEEVE QV+ AM++EIRRL LV ++ FHP L+ YK ELH +IE+GLG+N+ RCS + S+ + + +M D + L+P S + + PR F+++Y+L + LC+DF EDI F F+LGWT LVN+F+ P+N R A L+G Y + ++ R IP + M + Q S +E + ++++ GL+SL S T+MG++V G +VW+ VGW++IA S Y +Y YE+ WT AKE++FK+QFVE+ASEKLQ+V+S+T CSHQ+QQELS TFA L VD + ++ I ++++I+ L L++KAKL +NKA WL+++ N FT ++ L P+
Sbjct: 27 SPLKHFVTAKKKINGIFEQLGAYIQESATFLEDTYRNAELDPVTTEEQVLDVKGYLSKVRGISEVLARRHMKVAFFGRTSNGKSTVINAMLWDKVLPSGIGHTTNCFLRVEGTDGHEAFL--LTEGSEEKRSAKTVNQLAHALHQDKQLHAGSLVSVMWPNSKCPLLKDDLVLMDSPGIDVTTELDSWIDKFCLDADVFVLVANSESTLMQTEKHFFHKVSERLSRPNIFILNNRWDASA-SEPEYMEEVRRQHMERCTSFLVDELGVVDRSQAGDRIFFVSAKEVLNARIQ-KAQGMPEGGGALAE-----------GFQVRMFEFQNFERRFEECISQSAVKTKFEQHTVRAKQIAEAVRLIMDSLHMAAREQQVYCEEMREERQDRLKFIDKQLELLAQDYKLRIKQITEEVERQVSTAMAEEIRRLSVLVDDYQMDFHPSPVVLKVYKNELHRHIEEGLGRNMSDRCSTAITNSLQTMQQDMIDGLKPLLPVSVRSQIDMLVPRQCFSLNYDLNCDKLCADFQEDIEFHFSLGWTMLVNRFLGPKNSRRA-LMG-------YNDQVQ-----RPIPLTPANPSMPP----------LPQGSLTQE-----------EFMVSMVTGLASLTSRTSMGILVVGGVVWKAVGWRLIALSFGLYGLLYVYERLTWTTKAKERAFKRQFVEHASEKLQLVISYTGSNCSHQVQQELSGTFAHLCQQVDVTRENLEQEIAAMNKKIEVLDSLQSKAKLLRNKAGWLDSELNMFTHQY-LQPS 756 The following BLAST results are available for this feature:
BLAST of TCONS_00002835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.