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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002834 ID=TCONS_00002834|Name=TCONS_00002834|organism=Clytia hemisphaerica|type=transcript|length=835bp
CTTTGCTGGAAAAATGTAAAACGTTCCAAAAACATGTCGACGCtgtcaaa
aaatccaaaaacgaGGACAAAGATTTGAAATTACGAGCTATCAATGACAA
ATTAATGAATTTTGAACGCAATTTCATCATCAAAGGATTAGCGAAAAATG
AAGCTACGAGACACGCTGTCTACGCTACGTCATCTAACACATTAAAATCC
ATGAAATTCAATGGAATCGGAGAAGCTATCAAAGATGCTGTGAAGAATGG
AGGGGACTGGGACGAGGTTCGCAAACAAATCACGTTACTTGTTTGGTGTA
TTGATACAGCAAATCGATCACTTGATGTCGAAAAATATTAATAATACCTA
AAGGAAGGAAGcagaaaattcatgaaaatcagattcaaaaatacaaaaac
tttcttatgaagaaaaacatttatGCACAACTAAACTGGAaagttttctt
gatttcttcTCTGCGCTATCTCTGATAGTCATGGTAATTTGGACATAAAT
GCAGCAAGAATGCAGAAAGCATGACTTACAAATTGCAGTAAGGCTTCTTA
TtttatgaaaacagttaaacAAAGGTTTTCATAAGTTAATTCCTATTCCA
AATCCAGACTTTAGAGGTTTTTCAAATTAACTTTCGCAAATTTGTGGaag
aaaacgttcgatttgtgtAATGAGTGGCTTCTACAAATTCGAACATTTTC
TAAGTTAAGTAACTTTGGCAAAAACTGAAAACCTCTATAGTAGGAGATGC
ATCATTCCAAAAGTAGTGTCCTTGATAGAGGaccctatcgtctacacaag
atcactaaaaaagggaatagtttattAGAAGGCGG Run BLAST on NCBI protein sequence of TCONS_00002834-protein >TCONS_00002834-protein ID=TCONS_00002834-protein|Name=TCONS_00002834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
LLEKCKTFQKHVDAVKKSKNEDKDLKLRAINDKLMNFERNFIIKGLAKNE
ATRHAVYATSSNTLKSMKFNGIGEAIKDAVKNGGDWDEVRKQITLLVWCI
DTANRSLDVEKY Run BLAST on NCBI transcript from alignment at sc0000023:820294..821826+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002834 ID=TCONS_00002834|Name=TCONS_00002834|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at sc0000023:820294..821826+ (Clytia hemisphaerica)
CTTTGCTGGAAAAATGTAAAACGTTCCAAAAACATGTCGACGCtgtcaaa
aaatccaaaaacgaGGACAAAGATTTGAAATTACGAGCTATCAATGACAA
ATTAATGAATTTTGAACGCAATTTCATCATCAAAGGATTAGCGAAAAATG
AAGCTACGAGGTATGGAAAACTGTATTAGATTTTGAAGGACaatattgaa
attaattttcgtGGGAATTGATTTTAGCGTATTTTGcagtttttttgcca
aaaccgCGAGAATTTgaacccgcgaaatacaattttttccaattttaatt
tgttgaaaaatttgaaaaatccttagaaaaattaaagaaatttgtccaaa
aaagggcaaaaccgcgaaaattaaaacacGCGAAATGCATTTTTCCGTTT
TTATTCGACCGCGAATATTagttctcgcgaaaattagttccgatAAGATG
GTAGATACTTGACCTCGATTTCCTTAATGATTTTATCTCCTGACACTCGC
TTCAGCGAGTCGGTAAAAATTAGTTTCTTTTTTCTCaccggtaggatttt
ttggaTATATTTTCCAATGGGTGAGGGGTTCACCGGGTCTGTAAAACATA
CGGTGCTGCTGTTATGTAGCATGAATAAAATTTGACTCTGCGAATGCTCT
TCGACAAAGTtcattaatttgatttttattttcgttcTTCATTTTCGCCC
ACTCTTTACAAATGTGCGTACCCtcaatttttgcttaatttaaGATTTTG
TTTAAGTTTTTCGGATTAAAAATATAGACTACAATTACAAAAAATGGACT
TAGAAGTATTCTTACAGCATTAAAATATTGACTACGGTATCTATTCATCC
ATTTTTAGACACGCTGTCTACGCTACGTCATCTAACACATTAAAATCCAT
GAAATTCAATGGAATCGGAGAAGCTATCAAAGATGCTGTGAAGAATGGAG
GGGACTGGGACGAGGTTCGCAAACAAATCACGTTACTTGTTTGGTGTATT
GATACAGCAAATCGATCACTTGATGTCGAAAAATATTAATAATACCTAAA
GGAAGGAAGcagaaaattcatgaaaatcagattcaaaaatacaaaaactt
tcttatgaagaaaaacatttatGCACAACTAAACTGGAaagttttcttga
tttcttcTCTGCGCTATCTCTGATAGTCATGGTAATTTGGACATAAATGC
AGCAAGAATGCAGAAAGCATGACTTACAAATTGCAGTAAGGCTTCTTATt
ttatgaaaacagttaaacAAAGGTTTTCATAAGTTAATTCCTATTCCAAA
TCCAGACTTTAGAGGTTTTTCAAATTAACTTTCGCAAATTTGTGGaagaa
aacgttcgatttgtgtAATGAGTGGCTTCTACAAATTCGAACATTTTCTA
AGTTAAGTAACTTTGGCAAAAACTGAAAACCTCTATAGTAGGAGATGCAT
CATTCCAAAAGTAGTGTCCTTGATAGAGGaccctatcgtctacacaagat
cactaaaaaagggaatagtttattAGAAGGCGG Coding sequence (CDS) from alignment at sc0000023:820294..821826+ >TCONS_00002834 ID=TCONS_00002834|Name=TCONS_00002834|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000023:820294..821826+ (Clytia hemisphaerica)
TTGCTGGAAAAATGTAAAACGTTCCAAAAACATGTCGACGCtgtcaaaaa
atccaaaaacgaGGACAAAGATTTGAAATTACGAGCTATCAATGACAAAT
TAATGAATTTTGAACGCAATTTCATCATCAAAGGATTAGCGAAAAATGAA
GCTACGAGACACGCTGTCTACGCTACGTCATCTAACACATTAAAATCCAT
GAAATTCAATGGAATCGGAGAAGCTATCAAAGATGCTGTGAAGAATGGAG
GGGACTGGGACGAGGTTCGCAAACAAATCACGTTACTTGTTTGGTGTATT
GATACAGCAAATCGATCACTTGATGTCGAAAAATATTAATTGCTGGAAAA
ATGTAAAACGTTCCAAAAACATGTCGACGCtgtcaaaaaatccaaaaacg
aGGACAAAGATTTGAAATTACGAGCTATCAATGACAAATTAATGAATTTT
GAACGCAATTTCATCATCAAAGGATTAGCGAAAAATGAAGCTACGAGACA
CGCTGTCTACGCTACGTCATCTAACACATTAAAATCCATGAAATTCAATG
GAATCGGAGAAGCTATCAAAGATGCTGTGAAGAATGGAGGGGACTGGGAC
GAGGTTCGCAAACAAATCACGTTACTTGTTTGGTGTATTGATACAGCAAA
TCGATCACTTGATGTCGAAAAATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002834-exon-sc0000023-1491911889:820294..820453 | TCONS_00002834-exon-sc0000023-1491911889:820294..820453 | Clytia hemisphaerica | exon |
| TCONS_00002834-exon-sc0000023-1510915933:820294..820453 | TCONS_00002834-exon-sc0000023-1510915933:820294..820453 | Clytia hemisphaerica | exon |
| TCONS_00002834-exon-sc0000023-1575043694:820294..820453 | TCONS_00002834-exon-sc0000023-1575043694:820294..820453 | Clytia hemisphaerica | exon |
| TCONS_00002834-exon-sc0000023-1491911889:821152..821826 | TCONS_00002834-exon-sc0000023-1491911889:821152..821826 | Clytia hemisphaerica | exon |
| TCONS_00002834-exon-sc0000023-1510915933:821152..821826 | TCONS_00002834-exon-sc0000023-1510915933:821152..821826 | Clytia hemisphaerica | exon |
| TCONS_00002834-exon-sc0000023-1575043694:821152..821826 | TCONS_00002834-exon-sc0000023-1575043694:821152..821826 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023 | supercontig | sc0000023:820294..821826 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007365 | TFR-like_dimer_dom |
Blast
The following BLAST results are available for this feature:
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