|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002827 ID=TCONS_00002827|Name=TCONS_00002827|organism=Clytia hemisphaerica|type=transcript|length=2216bpRun BLAST on NCBI protein sequence of TCONS_00002827-protein >TCONS_00002827-protein ID=TCONS_00002827-protein|Name=TCONS_00002827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp MVDDKSTGKVKAVILVAGPQKGTRFRPLSLEVPKPLFPVAGKPLLEHHISRun BLAST on NCBI transcript from alignment at sc0000023:791723..806326+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002827 ID=TCONS_00002827|Name=TCONS_00002827|organism=Clytia hemisphaerica|type=transcript|length=14604bp|location=Sequence derived from alignment at sc0000023:791723..806326+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000023:791723..806326+ >TCONS_00002827 ID=TCONS_00002827|Name=TCONS_00002827|organism=Clytia hemisphaerica|type=CDS|length=14223bp|location=Sequence derived from alignment at sc0000023:791723..806326+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002827 vs. Swiss-Prot (Human)
Match: GMPPA (Mannose-1-phosphate guanyltransferase alpha OS=Homo sapiens GN=GMPPA PE=1 SV=1) HSP 1 Score: 434.106 bits (1115), Expect = 1.450e-144 Identity = 208/427 (48.71%), Postives = 299/427 (70.02%), Query Frame = 3
Query: 207 VKAVILVAGPQKGTRFRPLSLEVPKPLFPVAGKPLLEHHISSCCKLPDLEEIIILGFYQSNDTILRFIDDMKRQYKTSIRYLQEYQPLGTAGGLYHFRDQIVTASTKAIVVIHADIFCVLPLKKMMEMFSSKNENNAGSHIVLGTQVHQTSSNHSEHGNIVLDNNTFEVNHYVEKPESFVSAIINCGTYVFHPSVVESLGEVYRNTRDDGEQTSNREL------LFFGKHLFTKMAGRGKLFCHLLKESFWGSMKSAGSAIYANRRYLDSYKTNEGQQLVQNEPGKPEIVGDVFIHPTATVHPTAKLGPNVSIGSNCVIGPGARVKESIILDGADLRENCCVLYSIIGWRCLVGAWSRIEGTPHEPNPNFAHALVTNESLFHADGHLIPSVTVLGCNVIIPREVIVLNCIVLPHKELSGSYKNQIIL 1469
+KAVIL+ GPQKGTRFRPLS EVPKPLFPVAG P+++HHI +C ++P ++EI+++GFYQ ++ + +F++ ++++ +RYLQE+ PLGT GGLYHFRDQI+ S +A V++AD+ PL M+E + ++LGT ++T S + +G IV + T EV HYVEKP +F+S IINCG Y+F P ++ L +V++ + DG+ + L + + +F+ +AG+G+++ H L + W +KSAGSA+YA+R YL Y+ ++L ++ PG P I G+V+IHPTA V P+A LGPNVSIG +G G R++ESI+L GA L+E+ CVL+SI+GW VG W+R+EGTP +PNPN A + +ESLF DG L+P++T+LGC V IP EV++LN IVLPHKELS S+ NQIIL
Sbjct: 2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEPLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSDFPLSAMLEAHRRQRH----PFLLLGTTANRTQSLN--YGCIVENPQTHEVLHYVEKPSTFISDIINCGIYLFSPEALKPLRDVFQRNQQDGQLEDSPGLWPGAGTIRLEQDVFSALAGQGQIYVH-LTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPWIRGNVYIHPTAKVAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPSDPNPNDPRARMDSESLF-KDGKLLPAITILGCRVRIPAEVLILNSIVLPHKELSRSFTNQIIL 420 The following BLAST results are available for this feature:
BLAST of TCONS_00002827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.