TCONS_00002818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002818
Unique NameTCONS_00002818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002818 ID=TCONS_00002818|Name=TCONS_00002818|organism=Clytia hemisphaerica|type=transcript|length=281bp
AACGATTTTGGGTACCCTCAAAAGACAGATGTAGGAATTTTAAAGACTTT
TATAACACAACAAGGAATTCGCTCACAGACGAGAGAAGAACAAGCACAAA
TCACAAGTCAAGTTACAGGACAAATTGGTTGGAGGAGAGAAGGAATTAAA
TATAGACGGAATGAATTATTTCTCGATGTTTTGGAATCAGCGAATTTACT
GATGTCTCCTCAAGGTAAGTACTCGACTCAAACTTTATTTTGGATTATAG
TCAGACTAGTTAACTTTTAGATATTCAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000023:669499..670084+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002818 ID=TCONS_00002818|Name=TCONS_00002818|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0000023:669499..670084+ (Clytia hemisphaerica)
AACGATTTTGGGTACCCTCAAAAGACAGATGTAGGAATTTTAAAGACTTT
TATAACACAACAAGGAATTCGCTCACAGGTATGACGATGTCTACTATGTA
AAATCAATATTCTCTGAAGGGCCTAACCAGTAATTTTAAAGGGACATCTA
ATTACTTGTGAAATTTATAAAATCACTGCAAGCAAGGGGCTGTGAAATCA
AACAATGTCATTTGTGAACAGTTTCAAAACATTCTGTAGACGTTGAAAGA
CACGTGGTTGTTCGtgtaatgtttacattttacttatGCCTCTTTAATTT
TGAACACCAATAATTAATTGATACCAACCCTTTTTTATGAATTATTCTGT
GACAATTTATTTGAACTTTGAATTGATTTTCAGACGAGAGAAGAACAAGC
ACAAATCACAAGTCAAGTTACAGGACAAATTGGTTGGAGGAGAGAAGGAA
TTAAATATAGACGGAATGAATTATTTCTCGATGTTTTGGAATCAGCGAAT
TTACTGATGTCTCCTCAAGGTAAGTACTCGACTCAAACTTTATTTTGGAT
TATAGTCAGACTAGTTAACTTTTAGATATTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001535XLOC_001535Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002818-exon-sc0000023-1491911889:669499..669576TCONS_00002818-exon-sc0000023-1491911889:669499..669576Clytia hemisphaericaexon
TCONS_00002818-exon-sc0000023-1510915933:669499..669576TCONS_00002818-exon-sc0000023-1510915933:669499..669576Clytia hemisphaericaexon
TCONS_00002818-exon-sc0000023-1575043694:669499..669576TCONS_00002818-exon-sc0000023-1575043694:669499..669576Clytia hemisphaericaexon
TCONS_00002818-exon-sc0000023-1491911889:669882..670084TCONS_00002818-exon-sc0000023-1491911889:669882..670084Clytia hemisphaericaexon
TCONS_00002818-exon-sc0000023-1510915933:669882..670084TCONS_00002818-exon-sc0000023-1510915933:669882..670084Clytia hemisphaericaexon
TCONS_00002818-exon-sc0000023-1575043694:669882..670084TCONS_00002818-exon-sc0000023-1575043694:669882..670084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:669499..670084 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
232.213	218.27	269.736	263.397	211.693	160.736	200.994	207.464	214.136	224.258	177.609	170.835	183.012	206.41	174.971	176.569	238.994	241.211	116.113	115.273	140.803	129.812	103.345	135.909	95.0846	95.936	174.702	145.939	158.111	149.119
Blast
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BLAST of TCONS_00002818 vs. Swiss-Prot (Human)
Match: AP2M1 (AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.598e-36
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    4 DFGYPQKTDVGILKTFITQQGIRSQ--TREEQAQITSQVTGQIGWRREGIKYRRNELFLDVLESANLLMSPQGK 219
            DFGYPQ ++ G LKTFITQQGI+SQ  T+EEQ+QITSQVTGQIGWRREGIKYRRNELFLDVLES NLLMSPQG+
Sbjct:  117 DFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQ 190
The following BLAST results are available for this feature:
BLAST of TCONS_00002818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP2M11.598e-3683.78AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 P... [more]
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