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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002807 ID=TCONS_00002807|Name=TCONS_00002807|organism=Clytia hemisphaerica|type=transcript|length=2272bpRun BLAST on NCBI protein sequence of TCONS_00002807-protein >TCONS_00002807-protein ID=TCONS_00002807-protein|Name=TCONS_00002807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp MGAGSSSEVPGGGSEGYHVLRVQEGSPGYKAGLEPFFDFIISVEDRRLDQRun BLAST on NCBI transcript from alignment at sc0000023:556478..588712+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002807 ID=TCONS_00002807|Name=TCONS_00002807|organism=Clytia hemisphaerica|type=transcript|length=32235bp|location=Sequence derived from alignment at sc0000023:556478..588712+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000023:556478..588712+ >TCONS_00002807 ID=TCONS_00002807|Name=TCONS_00002807|organism=Clytia hemisphaerica|type=CDS|length=15240bp|location=Sequence derived from alignment at sc0000023:556478..588712+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002807 vs. Swiss-Prot (Human)
Match: GORS2 (Golgi reassembly-stacking protein 2 OS=Homo sapiens GN=GORASP2 PE=1 SV=3) HSP 1 Score: 281.567 bits (719), Expect = 1.125e-85 Identity = 138/187 (73.80%), Postives = 166/187 (88.77%), Query Frame = 3
Query: 240 YHVLRVQEGSPGYKAGLEPFFDFIISVEDRRLDQDDDTLKEVLKTNVEKPCKLLVYSSKTRKVRESSITPSNLWGGQGLLGVSIRFCSFDGASDNVWHVLDVNPNSPADIAGLRPHTDYVIGADQVLHDTEDFFNLIEQHEGKALKLYVYNAETDGCREVTITPNXXXXXXXXXXXXXXXXLLHRIP 800
YHVLRVQE SPG++AGLEPFFDFI+S+ RL++D+DTLK++LK NVEKP K+L+YSSKT ++RE+S+TPSNLWGGQGLLGVSIRFCSFDGA++NVWHVL+V NSPA +AGLRPH+DY+IGAD V++++ED F+LIE HE K LKLYVYN +TD CREV ITPN WGGEGS+GCGIGYG LHRIP
Sbjct: 17 YHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSLGCGIGYGYLHRIP 203 The following BLAST results are available for this feature:
BLAST of TCONS_00002807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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