TCONS_00002806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002806
Unique NameTCONS_00002806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1027

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002806 ID=TCONS_00002806|Name=TCONS_00002806|organism=Clytia hemisphaerica|type=transcript|length=1027bp
cctAACAGTACAATTAGTAAAAAGATGTCTTACAATTTCACTGGAAAAGT
TATACTTGTTACAGGAGCAAGTTCTGGTATAGGAGCTGGTACAGCTGTGT
ATTTCGCAAAAAATGGTGCTAAAGTTGCCATCACTGGTCGTAATGAAgac
aatttgaagaaaattgctcaaaaatgtgAAGAAGCAAGTCCTACTAAAGA
AAAGCCACTTTTAATTGTTGGTGACTTGGCAAAAGAAAGTGATGTTGAAA
AAGTCATGAATGAAACTATAAACCATTTTCAACAACTTGACGTTTTAGTT
AACAATGCTGGTATTTATACAGCTGGAAATTGTCAAAGTTTAACAATGGA
TACTTAtgataaacagatgaatgttaaTATGCGTTCTGTGTTTTATTTGA
CAAAACTTGCATGTCCACATCTTATCAAAACTAAAGGGAACATTATAAAC
GTATCAAGTCTTTCAAGTCTTCGAGCAAACACACACGCAGTTGCATACTC
ACTATCCAAAGCTGCGTTGGATCAATTCACAAGGACAACAGCCTTGGAGC
TCGCATCACACAAAGTTCGTTGCAATGCTGTTAACCCTGGTGTTATTGAT
ACTGAGATCTTTGTCACGTCTGGATTGACCGAAGAACAACGTGACGggCT
CATGAAACGCACTGCTGATATGTATCCATTGGGAAGACATGGTGAAGTCG
TAGAAGTAGCATCTGTCATTGCTTTCTTAGCTTCCGATTCTGCATCGTTT
ATCACTGGAGCTATTGTTCCTGTCGATGGTGGAATGAACTTAGCATGTCC
TCGATAATGAAAACAGGTACTACAGCCCAgaagaattattttttcattta
atccAACACagaactatttttgaaaaattcttttgcttGTATGATTTGGT
ATATTATAATGTTGTGCTAGCAATGTCACTTTCTTTGTTCGTTATTATTT
CATTAGGATGATAAATCTGAATAATGAATAGCTTGTTAATACGGCTTGAT
TGGTTCAAGAATAAATCTCAAGACCCT
Run BLAST on NCBI

protein sequence of TCONS_00002806-protein

>TCONS_00002806-protein ID=TCONS_00002806-protein|Name=TCONS_00002806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
PNSTISKKMSYNFTGKVILVTGASSGIGAGTAVYFAKNGAKVAITGRNED
NLKKIAQKCEEASPTKEKPLLIVGDLAKESDVEKVMNETINHFQQLDVLV
NNAGIYTAGNCQSLTMDTYDKQMNVNMRSVFYLTKLACPHLIKTKGNIIN
VSSLSSLRANTHAVAYSLSKAALDQFTRTTALELASHKVRCNAVNPGVID
TEIFVTSGLTEEQRDGLMKRTADMYPLGRHGEVVEVASVIAFLASDSASF
ITGAIVPVDGGMNLACPR
Run BLAST on NCBI

transcript from alignment at sc0000023:541402..548997+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002806 ID=TCONS_00002806|Name=TCONS_00002806|organism=Clytia hemisphaerica|type=transcript|length=7596bp|location=Sequence derived from alignment at sc0000023:541402..548997+ (Clytia hemisphaerica)
cctAACAGTACAATTAGTAAAAAGATGTCTTACAATTTCACTGGAAAAGT
TATACTTGTTACAGGTCTGTACATttcattatttaatttttcctatttcT
AAACAAACTAGTTACCCTGGACAGACTTCTTTATCACACCCCTGGCtaac
agccccggtggaacttttttcttcagtagtggggataaaaatctctatcg
aaatcccaatgaggatagaaattttatGGGTTTGGAGAGCAATctttaga
cattgattttcgagtgggaatgaaattccagggtattttcccattgggaa
ccaaatgtttgccaaattttccagtggggatggggtcccagtgggtctgt
cacacaggggtgttttatccGTTACGGAAAAGATAACGAACATATTTATA
TCCTCACacaacaaaaaaacacaaaaatagagAGGTACCAGGCTATAGTT
AACTCTTTCTAATACTAATTCTTTACAGACGTCAATGCTTGACCAAAAGT
AAGTCACTTTACTTTGACATTTGGACCTTGactgagccccccccccccca
aagcgGACCTTCCATTCACACAATCACGCAAGTGTCTTaaccaaattcac
gcattcatgcatttatttttttctttaatttttacgCATTCACgtaagtg
aaaaagcccattcaagcaatcacgcaaaccgctggggggccctATACTAA
TAGATTGGGAATATAATCTACAATTGATGTGTTGCATGGCCTGTGATTAA
GTAACTCGTTAATCACGACGAGTCAGTAACTTGTTAATCACGACGAGTCG
ataatgccaataaaaaaaatatttttcactatTATTCATTCAGGAGCAAG
TTCTGGTATAGGAGCTGGTACAGCTGTGTATTTCGCAAAAAATGGTGCTA
AAGTTGCCATCACTGGTCGTAATGAAgacaatttgaagaaaattgctcaa
aaatgtgAAGAAGCAAGTCCTACTAAAGAAAAGGTACCTATTTATCCAAG
TTTTGATagcctcgttccctgcgtattatcggcTTTTTGATgattactga
tagcgctagataatttTCCCTGACGTCAATCAGCAATGTGAATAACAAGC
CTGGGATACATGAGGACGAGGTTGTAGATAAGCTTGATAATCCGTTTTTT
TTAAGGGCCGACAAAAGGAGAAGAGAAGAAATAGGGTCAACAAGCACAGA
AATTTTtaccagaaaaattttttttcaaattctttcttcccgtgtgcagc
cttagatttattttgaaataatgaaGTAGTAAACTAGGCTAGAGTTAAAG
ATATATTAATCATTATTCCAGTATAGTACCACCAATTATCGCCTATGAAT
ATCACCCAGACTACAGTCTGGTGGTTTATCAATCAGATCATCGTTAAAAA
TGTCGAGGGAGGGCAATCATATGGTCCGACcaacggcatgtgccgccctt
aagggtaggtttttcgagatcctcgaaatgcactgtacttttgatagagt
gcactacaagggtctttTAGCTGGaaacactgtaagggtgtgtttgggga
ctgctgaattgcaagtctgccagtaaaaatctgatgtatctttatagttt
tgactcgcaccAATTTGGTTTGGTTTTGCACATTTTGTCGACATCTAAGT
CTCATTTTCAGATggtttcagcaaaataagatatgaaaacaaactacact
gtaagggtcagagaAAATCGGTAGAATGCACCGTAATGGTACCCTTTCAC
TACTCGAGGGCTGCACTGTCAGGGGATGTGTAAGGGTCCGATTCCGAAAG
CTATTTTTTTGGTGGTACATGCCATTGTTTAGAAATCAAGTGCCCCCTCC
CCCCCGGTCAAAATGCCATCAAAGAATATATGGTATAAtttatataatat
tattttttataattttctctTTCTAGCCACTTTTAATTGTTGGTGACTTG
GCAAAAGAAAGTGATGTTGAAAAAGTCATGAATGAAACTATAAACCATTT
TCAACAACTTGACGTTTTAGTAAGTATATTCCATTTCTTACTGATTACTG
GTGTCCTCTCATAGTTGAGTTATTTTGCGAAAATTGTTCATTATaatggg
gggggggcgtacggggttctcgatttccgaaataccgaataattttgcca
aaatttgggaaattctgtaaaaaaatacttgcaattgaACTGAATGACTG
ATTAAGTCCAAGGTTATACCATATAGCCTTCTAGAATATATATCCGGTCA
CTACTAAATATTCGTTACTTATTGGAAACCTCGCTATCACATATCGTTAT
TATTTATATATATGTTATCTACTCAAACAGATTTATTGCATCCTGGAAAA
TTTCTCTTTGAATTTCCTAAAATTCCTGTaattttgagataaaaaaacaa
atctGCAAGCAGCATATCTGATAAGGAATCTGATAAGGGCAGCTAAAACC
TAATTATTGTAGTATTGAAGGAacatcttttaaaatttcattttgactat
ttAATAGGTTAACAATGCTGGTATTTATACAGCTGGAAATTGTCAAAGTT
TAACAATGGATACTTAtgataaacagatgaatgttaaTATGCGGTAAGGG
TTTCATTAACAATCTCGTGTGCTTCTTTAATCTTACTTAAAATGCAACGC
AGGTAAGGAAATAATAATTCGAGAACTAATTATCGATTCATTGTTTAGCA
CGCTccaatcatagtataagaaagccgcggctggaatgataacatctgaa
tttctactgttctatctctgtcgtatttgatgactatttgttgatcaaga
aatcagtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacttctcagtgcgtttt
agacattaatgatatgcccttgataatacacttgtattataaaatcattg
taaaggaaaaatcaacacTAAGAAATTCAAACAtgctgacaggaaagttg
tcatcttgaatatagttcttataatttcaattttggcgaaaaactattgt
ttccacaaaatacccctaaaatttgtccaaaattagttcaagtgttctat
tgggtacagattcaaagatatctagcaacaaaaacactttttgtgaagga
aaataagagaaaaatttcaaaaactatctaccaataataaactgaacatc
ttgatgttcttataaagctcggagacagagatggaacagccattaactga
aaagacaatgcggtacatattccagccgcggctttcttatactatgctcc
AATTatgtcatgaaattttgcacgccCATGTTTGCATTCACTTGTTACCA
GACTTACAATTACCTTAATAACATAATTTTGGGCGTTTTACGGACGCTTT
TTAGACGTCCTGAAAAATCAAGTCCGTTAAAGACGGCTTAAAAGGACGTC
GCGATTGGACCGGGACGGGCTATGGACGAGCGGACGTGATTTATACGTCA
TATAGTCTTCCTCCGGACTTTCTGTGCCCACTGGGATTTGTTCTATAGAT
TATTGAATTTACtaatttaaaaccaattttaaattggaaaaatattttca
cataGTTAAGTCAAAGGAAAATCTTTGTATCGAGTTTGAATCCTTTGTTA
TTATGTTCTATATTTCTCACACTTTTAGTTCTGTGTTTTATTTGACAAAA
CTTGCATGTCCACATCTTATCAAAACTAAAGGTACATTGTATTCAATTTT
ATTGTTATAAAATCATGTCCATagtctcaacttcagttgagctaNCATTG
TATTCAATTTTATTGTTATAAAATCATGTccatattctcaacttcagttg
agctagaatctgagaatgtccgTGTGTCTGTGTATCTGTTTATCTGTGCC
TGTCtatatgtcccaaaactttgaaGAAGCCTCAAAAGGCCAAAGCGTAA
CTGATTTGTCCGAAATTGGGTACAATTGGGTGATTTATTCAATCTTAACA
ACACTTTCATAGTTTTACCATGACGGTGATTTTCTTCCTACTATTATAAT
TAAACTTGGAATAGTCTTGCCAGTTACGGTACGAACTGTATTTTCAATTC
TCGTGGACCTTAAATTCAAATATACTTTTTCGTGTTCCTACCCTAGGTAA
GTGAactaccggacgtgcggcccttaagggtaggttttttggttttcttt
gtgagcaagtgggaaaaagtgcactgtaagggtgtaaaatttgagaaaat
accaaattttgaggtaaaatttgagaaatttcaaaagattttgccctgaa
aagggcaaaaaaattcgaaaaattgcactataagggtcgattttcagccc
cCCGGGCCCTAACCATCGCCCTTGCATTGCTTTGGGTTTTAAATTACGGG
CTTCGAATTCTCCGTAATTTTATTTTGTAAGTGAAATTACTTAGATTCTC
TAAATATTTGTTTCTACTTTATATACAGGGAACATTATAAACGTATCAAG
TCTTTCAAGTCTTCGAGCAGTAAGATATCTATATCCAAGCCTGAGTAGTT
ATTCTGTTTTTAAATTTCTCCTTCATATTTTTGTCTAAAGTCATTTCTCT
GTTTGAACATTGAGAAATGGTGAAATATAGTTCAAACACCTCTTATAATT
TCCTTAAATTCtgattctcaacttcagttgagctacaatctgacaatgtc
tgtgtgtctgtgtgtctgtgtgtgtgtctgtctgtcacaaaaactttagg
gcagcctggagacttcaaaaatgcttggatttggctgaaatttggcacac
ttgttccttgggtgaatatctgggggtgtttttttcattttttgaaaatt
ttgatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgctaaaactttgggg
caggctggagacttcaaaaatggtccgattgggctgaaatttggcacact
tgttccttgggtgaatatctgggggtattttttttatttttcaaaatttt
tgatttttggggcttggggacgagttttcgccaaaacgaggctaaaactt
tggggcagcctggagacttcaaaaattgttcgatttggttgaaatttggc
acacttgttccttgggtgaatatctgagggtaattttttcatttttcaaa
atttttgatttttagggcctggggacgagttttcgccaaaacgaggctaa
aactttggggcagcctggagacttcaaaaattgttcgatttgactgaaat
tttgcacacttgtttcttgggtgaatatctggggttgtttttttcatttt
tcaaaaattttgatttttggggactGGGgatgagtttttcgccaaaacga
ggctaaaattttggggcagcctggagacttcaaaaattgttcgatttgac
tgaaattttgcacacttgtttcttgggtgaatatctggggttgttttttg
catttttcaaaaatttagatttttggggcctggggaggagttttttgcca
aaacgaggctaaagctttgaagcagcctacagccctccaaaatggtcgga
tttggttgaaatttggcacacttgttcattgggtaaatatctggNNNNNN
NNNNNNNNNNNNNNNNNNNNNNATTTATCAGTACGATAAAATAATTTGCT
ATCCTTTTAAATCACGATCTCATAAATCGTTTTCATAAAAGTGTTAACAA
TTTAATTCTACTTTCTTTCAGAACACACACGCAGTTGCATACTCACTATC
CAAAGCTGCGTTGGATCAATTCACAAGGACAACAGCCTTGGAGCTCGCAT
CACACAAAGTTCGTTGCAATGCTGTTAACCCTGGTGTTATTGATACTGAG
ATCTTTGTCACGTCTGGATTGACCGAAGAACAACGTGACGgggtaataga
ccttttcataaattacgtcacgaatatcacttgcctcgtattcaaacagt
tatcatggtgattatgtctcttgagacattgaATGGggttttatgaatag
gaagtagttttaataaaatccgctgggagttaatcaccatggcaataatt
tcaaaacgaggcaagcgatgttcggaacgtaatttatgaaaagatctacc
taatattcaatattttatcgGACAAAAAACTATCGGACTAATTTTTAAAC
TTCTCGAAGATTTNTTTTATCGGACAAAAAACTATCGGACTAATTTTTAG
AACTTCTCGAAGATTTCACGATCTCAAACTCTTATTacttatacatgttt
tttataagcaggtgtctgcccctatatcaggctcgcattatgcttatcat
actattgttctcaaaAAATAGAGCTAATGTTTAGGtgccaaaaactgagc
ctgcgtatccttataaacgttatgcttataaaagaaaaaacatgtatgct
tATATCTATCTCTATATCGatcttctttctttctctttCTTGAAAACATC
TTGAGAACATCTCttgatttttccatttttttggaTACAATGAAACACCC
TCTTCACTTCTCCACAGacccttcccactgaaaaaattggccaaaatatc
gtccccaagtggaaaattataccctaatttttgtccccgctgaaaatatt
caGATAAAGCAAATCCGCACTACAAAacattgtgctattttttctatccc
cactgaataTTCTGGCTAGGAAAcataatggaattcaaatccccggccat
aaaaacatgggaatatctcCATCGatttttggtccgttatttctACCCCC
GCTGGCTGATAAAATCTCACtggttctgtgagaagggggtgtaatgaaaa
actacttggaagaaaaaaggttttcttaagatttttgttaggaaaatata
ttcaaagcaaatctttttttttactttcatcACACTTTCATTGCAGCTCA
TGAAACGCACTGCTGATATGTATCCATTGGGAAGACATGGTGAAGTCGTA
GAAGTAGCATCTGTCATTGCTTTCTTAGCTTCCGATTCTGCATCGTTTAT
CACTGGAGCTATTGTTCCTGTCGATGGTGGAATGAACTTAGCATGTCCTC
GATAATGAAAACAGGTTctgttttgataggtattttaATGTATAATTTAG
TAACGCTTAACTATAAAAATGCATAACCAGAGGCGtaatattttaataat
tttgaataattttgatAGCTTTTCAAAATGGATAAAGTAGTAGAGGATTT
TCCTAAAAACTAAATATTTCGACAATACATTTCAGGTACTACAGCCCAga
agaattattttttcatttaatccAACACagaactatttttgaaaaattct
tttgcttGTATGATTTGGTATATTATAATGTTGTGCTAGCAATGTCACTT
TCTTTGTTCGTTATTATTTCATTAGGATGATAAATCTGAATAATGAATAG
CTTGTTAATACGGCTTGATTGGTTCAAGAATAAATCTCAAGACCCT

Coding sequence (CDS) from alignment at sc0000023:541402..548997+

>TCONS_00002806 ID=TCONS_00002806|Name=TCONS_00002806|organism=Clytia hemisphaerica|type=CDS|length=6456bp|location=Sequence derived from alignment at sc0000023:541402..548997+ (Clytia hemisphaerica)
cctAACAGTACAATTAGTAAAAAGATGTCTTACAATTTCACTGGAAAAGT
TATACTTGTTACAGGAGCAAGTTCTGGTATAGGAGCTGGTACAGCTGTGT
ATTTCGCAAAAAATGGTGCTAAAGTTGCCATCACTGGTCGTAATGAAgac
aatttgaagaaaattgctcaaaaatgtgAAGAAGCAAGTCCTACTAAAGA
AAAGCCACTTTTAATTGTTGGTGACTTGGCAAAAGAAAGTGATGTTGAAA
AAGTCATGAATGAAACTATAAACCATTTTCAACAACTTGACGTTTTAGTT
AACAATGCTGGTATTTATACAGCTGGAAATTGTCAAAGTTTAACAATGGA
TACTTAtgataaacagatgaatgttaaTATGCGTTCTGTGTTTTATTTGA
CAAAACTTGCATGTCCACATCTTATCAAAACTAAAGGGAACATTATAAAC
GTATCAAGTCTTTCAAGTCTTCGAGCAAACACACACGCAGTTGCATACTC
ACTATCCAAAGCTGCGTTGGATCAATTCACAAGGACAACAGCCTTGGAGC
TCGCATCACACAAAGTTCGTTGCAATGCTGTTAACCCTGGTGTTATTGAT
ACTGAGATCTTTGTCACGTCTGGATTGACCGAAGAACAACGTGACGggCT
CATGAAACGCACTGCTGATATGTATCCATTGGGAAGACATGGTGAAGTCG
TAGAAGTAGCATCTGTCATTGCTTTCTTAGCTTCCGATTCTGCATCGTTT
ATCACTGGAGCTATTGTTCCTGTCGATGGTGGAATGAACTTAGCATGTCC
TCGATAAcctAACAGTACAATTAGTAAAAAGATGTCTTACAATTTCACTG
GAAAAGTTATACTTGTTACAGGAGCAAGTTCTGGTATAGGAGCTGGTACA
GCTGTGTATTTCGCAAAAAATGGTGCTAAAGTTGCCATCACTGGTCGTAA
TGAAgacaatttgaagaaaattgctcaaaaatgtgAAGAAGCAAGTCCTA
CTAAAGAAAAGCCACTTTTAATTGTTGGTGACTTGGCAAAAGAAAGTGAT
GTTGAAAAAGTCATGAATGAAACTATAAACCATTTTCAACAACTTGACGT
TTTAGTTAACAATGCTGGTATTTATACAGCTGGAAATTGTCAAAGTTTAA
CAATGGATACTTAtgataaacagatgaatgttaaTATGCGTTCTGTGTTT
TATTTGACAAAACTTGCATGTCCACATCTTATCAAAACTAAAGGGAACAT
TATAAACGTATCAAGTCTTTCAAGTCTTCGAGCAAACACACACGCAGTTG
CATACTCACTATCCAAAGCTGCGTTGGATCAATTCACAAGGACAACAGCC
TTGGAGCTCGCATCACACAAAGTTCGTTGCAATGCTGTTAACCCTGGTGT
TATTGATACTGAGATCTTTGTCACGTCTGGATTGACCGAAGAACAACGTG
ACGggCTCATGAAACGCACTGCTGATATGTATCCATTGGGAAGACATGGT
GAAGTCGTAGAAGTAGCATCTGTCATTGCTTTCTTAGCTTCCGATTCTGC
ATCGTTTATCACTGGAGCTATTGTTCCTGTCGATGGTGGAATGAACTTAG
CATGTCCTCGATAAcctAACAGTACAATTAGTAAAAAGATGTCTTACAAT
TTCACTGGAAAAGTTATACTTGTTACAGGAGCAAGTTCTGGTATAGGAGC
TGGTACAGCTGTGTATTTCGCAAAAAATGGTGCTAAAGTTGCCATCACTG
GTCGTAATGAAgacaatttgaagaaaattgctcaaaaatgtgAAGAAGCA
AGTCCTACTAAAGAAAAGCCACTTTTAATTGTTGGTGACTTGGCAAAAGA
AAGTGATGTTGAAAAAGTCATGAATGAAACTATAAACCATTTTCAACAAC
TTGACGTTTTAGTTAACAATGCTGGTATTTATACAGCTGGAAATTGTCAA
AGTTTAACAATGGATACTTAtgataaacagatgaatgttaaTATGCGTTC
TGTGTTTTATTTGACAAAACTTGCATGTCCACATCTTATCAAAACTAAAG
GGAACATTATAAACGTATCAAGTCTTTCAAGTCTTCGAGCAAACACACAC
GCAGTTGCATACTCACTATCCAAAGCTGCGTTGGATCAATTCACAAGGAC
AACAGCCTTGGAGCTCGCATCACACAAAGTTCGTTGCAATGCTGTTAACC
CTGGTGTTATTGATACTGAGATCTTTGTCACGTCTGGATTGACCGAAGAA
CAACGTGACGggCTCATGAAACGCACTGCTGATATGTATCCATTGGGAAG
ACATGGTGAAGTCGTAGAAGTAGCATCTGTCATTGCTTTCTTAGCTTCCG
ATTCTGCATCGTTTATCACTGGAGCTATTGTTCCTGTCGATGGTGGAATG
AACTTAGCATGTCCTCGATAAcctAACAGTACAATTAGTAAAAAGATGTC
TTACAATTTCACTGGAAAAGTTATACTTGTTACAGGAGCAAGTTCTGGTA
TAGGAGCTGGTACAGCTGTGTATTTCGCAAAAAATGGTGCTAAAGTTGCC
ATCACTGGTCGTAATGAAgacaatttgaagaaaattgctcaaaaatgtgA
AGAAGCAAGTCCTACTAAAGAAAAGCCACTTTTAATTGTTGGTGACTTGG
CAAAAGAAAGTGATGTTGAAAAAGTCATGAATGAAACTATAAACCATTTT
CAACAACTTGACGTTTTAGTTAACAATGCTGGTATTTATACAGCTGGAAA
TTGTCAAAGTTTAACAATGGATACTTAtgataaacagatgaatgttaaTA
TGCGTTCTGTGTTTTATTTGACAAAACTTGCATGTCCACATCTTATCAAA
ACTAAAGGGAACATTATAAACGTATCAAGTCTTTCAAGTCTTCGAGCAAA
CACACACGCAGTTGCATACTCACTATCCAAAGCTGCGTTGGATCAATTCA
CAAGGACAACAGCCTTGGAGCTCGCATCACACAAAGTTCGTTGCAATGCT
GTTAACCCTGGTGTTATTGATACTGAGATCTTTGTCACGTCTGGATTGAC
CGAAGAACAACGTGACGggCTCATGAAACGCACTGCTGATATGTATCCAT
TGGGAAGACATGGTGAAGTCGTAGAAGTAGCATCTGTCATTGCTTTCTTA
GCTTCCGATTCTGCATCGTTTATCACTGGAGCTATTGTTCCTGTCGATGG
TGGAATGAACTTAGCATGTCCTCGATAAcctAACAGTACAATTAGTAAAA
AGATGTCTTACAATTTCACTGGAAAAGTTATACTTGTTACAGGAGCAAGT
TCTGGTATAGGAGCTGGTACAGCTGTGTATTTCGCAAAAAATGGTGCTAA
AGTTGCCATCACTGGTCGTAATGAAgacaatttgaagaaaattgctcaaa
aatgtgAAGAAGCAAGTCCTACTAAAGAAAAGCCACTTTTAATTGTTGGT
GACTTGGCAAAAGAAAGTGATGTTGAAAAAGTCATGAATGAAACTATAAA
CCATTTTCAACAACTTGACGTTTTAGTTAACAATGCTGGTATTTATACAG
CTGGAAATTGTCAAAGTTTAACAATGGATACTTAtgataaacagatgaat
gttaaTATGCGTTCTGTGTTTTATTTGACAAAACTTGCATGTCCACATCT
TATCAAAACTAAAGGGAACATTATAAACGTATCAAGTCTTTCAAGTCTTC
GAGCAAACACACACGCAGTTGCATACTCACTATCCAAAGCTGCGTTGGAT
CAATTCACAAGGACAACAGCCTTGGAGCTCGCATCACACAAAGTTCGTTG
CAATGCTGTTAACCCTGGTGTTATTGATACTGAGATCTTTGTCACGTCTG
GATTGACCGAAGAACAACGTGACGggCTCATGAAACGCACTGCTGATATG
TATCCATTGGGAAGACATGGTGAAGTCGTAGAAGTAGCATCTGTCATTGC
TTTCTTAGCTTCCGATTCTGCATCGTTTATCACTGGAGCTATTGTTCCTG
TCGATGGTGGAATGAACTTAGCATGTCCTCGATAAcctAACAGTACAATT
AGTAAAAAGATGTCTTACAATTTCACTGGAAAAGTTATACTTGTTACAGG
AGCAAGTTCTGGTATAGGAGCTGGTACAGCTGTGTATTTCGCAAAAAATG
GTGCTAAAGTTGCCATCACTGGTCGTAATGAAgacaatttgaagaaaatt
gctcaaaaatgtgAAGAAGCAAGTCCTACTAAAGAAAAGCCACTTTTAAT
TGTTGGTGACTTGGCAAAAGAAAGTGATGTTGAAAAAGTCATGAATGAAA
CTATAAACCATTTTCAACAACTTGACGTTTTAGTTAACAATGCTGGTATT
TATACAGCTGGAAATTGTCAAAGTTTAACAATGGATACTTAtgataaaca
gatgaatgttaaTATGCGTTCTGTGTTTTATTTGACAAAACTTGCATGTC
CACATCTTATCAAAACTAAAGGGAACATTATAAACGTATCAAGTCTTTCA
AGTCTTCGAGCAAACACACACGCAGTTGCATACTCACTATCCAAAGCTGC
GTTGGATCAATTCACAAGGACAACAGCCTTGGAGCTCGCATCACACAAAG
TTCGTTGCAATGCTGTTAACCCTGGTGTTATTGATACTGAGATCTTTGTC
ACGTCTGGATTGACCGAAGAACAACGTGACGggCTCATGAAACGCACTGC
TGATATGTATCCATTGGGAAGACATGGTGAAGTCGTAGAAGTAGCATCTG
TCATTGCTTTCTTAGCTTCCGATTCTGCATCGTTTATCACTGGAGCTATT
GTTCCTGTCGATGGTGGAATGAACTTAGCATGTCCTCGATAAcctAACAG
TACAATTAGTAAAAAGATGTCTTACAATTTCACTGGAAAAGTTATACTTG
TTACAGGAGCAAGTTCTGGTATAGGAGCTGGTACAGCTGTGTATTTCGCA
AAAAATGGTGCTAAAGTTGCCATCACTGGTCGTAATGAAgacaatttgaa
gaaaattgctcaaaaatgtgAAGAAGCAAGTCCTACTAAAGAAAAGCCAC
TTTTAATTGTTGGTGACTTGGCAAAAGAAAGTGATGTTGAAAAAGTCATG
AATGAAACTATAAACCATTTTCAACAACTTGACGTTTTAGTTAACAATGC
TGGTATTTATACAGCTGGAAATTGTCAAAGTTTAACAATGGATACTTAtg
ataaacagatgaatgttaaTATGCGTTCTGTGTTTTATTTGACAAAACTT
GCATGTCCACATCTTATCAAAACTAAAGGGAACATTATAAACGTATCAAG
TCTTTCAAGTCTTCGAGCAAACACACACGCAGTTGCATACTCACTATCCA
AAGCTGCGTTGGATCAATTCACAAGGACAACAGCCTTGGAGCTCGCATCA
CACAAAGTTCGTTGCAATGCTGTTAACCCTGGTGTTATTGATACTGAGAT
CTTTGTCACGTCTGGATTGACCGAAGAACAACGTGACGggCTCATGAAAC
GCACTGCTGATATGTATCCATTGGGAAGACATGGTGAAGTCGTAGAAGTA
GCATCTGTCATTGCTTTCTTAGCTTCCGATTCTGCATCGTTTATCACTGG
AGCTATTGTTCCTGTCGATGGTGGAATGAACTTAGCATGTCCTCGATAAc
ctAACAGTACAATTAGTAAAAAGATGTCTTACAATTTCACTGGAAAAGTT
ATACTTGTTACAGGAGCAAGTTCTGGTATAGGAGCTGGTACAGCTGTGTA
TTTCGCAAAAAATGGTGCTAAAGTTGCCATCACTGGTCGTAATGAAgaca
atttgaagaaaattgctcaaaaatgtgAAGAAGCAAGTCCTACTAAAGAA
AAGCCACTTTTAATTGTTGGTGACTTGGCAAAAGAAAGTGATGTTGAAAA
AGTCATGAATGAAACTATAAACCATTTTCAACAACTTGACGTTTTAGTTA
ACAATGCTGGTATTTATACAGCTGGAAATTGTCAAAGTTTAACAATGGAT
ACTTAtgataaacagatgaatgttaaTATGCGTTCTGTGTTTTATTTGAC
AAAACTTGCATGTCCACATCTTATCAAAACTAAAGGGAACATTATAAACG
TATCAAGTCTTTCAAGTCTTCGAGCAAACACACACGCAGTTGCATACTCA
CTATCCAAAGCTGCGTTGGATCAATTCACAAGGACAACAGCCTTGGAGCT
CGCATCACACAAAGTTCGTTGCAATGCTGTTAACCCTGGTGTTATTGATA
CTGAGATCTTTGTCACGTCTGGATTGACCGAAGAACAACGTGACGggCTC
ATGAAACGCACTGCTGATATGTATCCATTGGGAAGACATGGTGAAGTCGT
AGAAGTAGCATCTGTCATTGCTTTCTTAGCTTCCGATTCTGCATCGTTTA
TCACTGGAGCTATTGTTCCTGTCGATGGTGGAATGAACTTAGCATGTCCT
CGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001531XLOC_001531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002806-exon-sc0000023-1491911889:541402..541465TCONS_00002806-exon-sc0000023-1491911889:541402..541465Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1510915933:541402..541465TCONS_00002806-exon-sc0000023-1510915933:541402..541465Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1575043694:541402..541465TCONS_00002806-exon-sc0000023-1575043694:541402..541465Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1491911889:542245..542384TCONS_00002806-exon-sc0000023-1491911889:542245..542384Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1510915933:542245..542384TCONS_00002806-exon-sc0000023-1510915933:542245..542384Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1575043694:542245..542384TCONS_00002806-exon-sc0000023-1575043694:542245..542384Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1491911889:543328..543420TCONS_00002806-exon-sc0000023-1491911889:543328..543420Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1510915933:543328..543420TCONS_00002806-exon-sc0000023-1510915933:543328..543420Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1575043694:543328..543420TCONS_00002806-exon-sc0000023-1575043694:543328..543420Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1491911889:543909..543994TCONS_00002806-exon-sc0000023-1491911889:543909..543994Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1510915933:543909..543994TCONS_00002806-exon-sc0000023-1510915933:543909..543994Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1575043694:543909..543994TCONS_00002806-exon-sc0000023-1575043694:543909..543994Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1491911889:545180..545232TCONS_00002806-exon-sc0000023-1491911889:545180..545232Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1510915933:545180..545232TCONS_00002806-exon-sc0000023-1510915933:545180..545232Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1575043694:545180..545232TCONS_00002806-exon-sc0000023-1575043694:545180..545232Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1491911889:545980..546020TCONS_00002806-exon-sc0000023-1491911889:545980..546020Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1510915933:545980..546020TCONS_00002806-exon-sc0000023-1510915933:545980..546020Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1575043694:545980..546020TCONS_00002806-exon-sc0000023-1575043694:545980..546020Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1491911889:547273..547443TCONS_00002806-exon-sc0000023-1491911889:547273..547443Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1510915933:547273..547443TCONS_00002806-exon-sc0000023-1510915933:547273..547443Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1575043694:547273..547443TCONS_00002806-exon-sc0000023-1575043694:547273..547443Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1491911889:548448..548615TCONS_00002806-exon-sc0000023-1491911889:548448..548615Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1510915933:548448..548615TCONS_00002806-exon-sc0000023-1510915933:548448..548615Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1575043694:548448..548615TCONS_00002806-exon-sc0000023-1575043694:548448..548615Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1491911889:548787..548997TCONS_00002806-exon-sc0000023-1491911889:548787..548997Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1510915933:548787..548997TCONS_00002806-exon-sc0000023-1510915933:548787..548997Clytia hemisphaericaexon
TCONS_00002806-exon-sc0000023-1575043694:548787..548997TCONS_00002806-exon-sc0000023-1575043694:548787..548997Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002806-proteinTCONS_00002806-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:541402..548997 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.260228	0.592114	0.392858	0.576525	0.584887	0.184874	1.22674	1.77488	6.067	4.0291	6.41538	10.7164	36.9792	28.8474	44.6007	80.5564	21.4887	21.9251	18.7646	11.4824	21.5959	20.8629	13.8246	17.3157	4.74972	6.23384	4.99554	5.64872	50.8827	40.659
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
[Close]
BLAST of TCONS_00002806 vs. Swiss-Prot (Human)
Match: BDH2 (3-hydroxybutyrate dehydrogenase type 2 OS=Homo sapiens GN=BDH2 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.614e-32
Identity = 90/256 (35.16%), Postives = 138/256 (53.91%), Query Frame = 1 
Query:   43 GKVILVXXXXXXXXXXXXVYFAKNGAKVAITGRNEDNLKKIAQKCEEASPTKEKPLLIVGDLAKESDVEKVMNETINHFQQLDVLVNNAGIYTAGNCQSLTMDTYDKQMNVNMRSVFYLTKLACPHLIKTK-GNIINVSSL-SSLRANTHAVAYSLSKAALDQFTRTTALELASHKVRCNAVNPGVIDT----EIFVTSGLTEEQRDGLMKRTADMYPLGRHGEVVEVASVIAFLASDSASFITGAIVPVDGGMNL 792
            GKVI++T A+ GIG   A+ FA+ GAKV  T  NE  L+++     E  P  +  +L   D+ K+  +++  NE     ++LDVL N AG    G         +D  MN+N+RS++ + K   P ++  K GNIIN+SS+ SS++   +   YS +KAA+   T++ A +     +RCN V PG +DT    E     G  EE R+  +KR       GR     E+A +  +LASD ++++TG  V +DGG +L
Sbjct:    6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL-----EKYPGIQTRVL---DVTKKKQIDQFANEV----ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ----KTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGWSL 245
The following BLAST results are available for this feature:
BLAST of TCONS_00002806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BDH22.614e-3235.163-hydroxybutyrate dehydrogenase type 2 OS=Homo sap... [more]
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