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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002779 ID=TCONS_00002779|Name=TCONS_00002779|organism=Clytia hemisphaerica|type=transcript|length=1427bp
aaattatataAGTGACATGTacttttttcctttgttaaattTAAATAATA
CTGTCACTTCTCTAATCCGAACCTCTACAGTTTGAATTCCATAGTTCGAT
AAACTTCATCTTCATGATCACATAATCTGGTTCTCATAATAAACATTAGT
CAATCAGTCTTCTTCTTTGATCGCCTCTAACACTGTTTGAGTCGGCTTCG
AGTTTGTTCTTGACGCCGAGACTGACGGTGGTGTGATTTTTCGATTCTGA
CTGGTCGAACATGTTCTATTCGAGCCGTAATCCCAATCTCCTGAACCACC
TCTTAAGCATTTTCCAACTGTCTTTTTGACTTCTCTATGGAAAGCTACAA
ACAAAATTTGATCAACAATAGCATTCGATAGCGCTGAAATTTCTGCTAGC
TGCGAAAAGAGTTTTCTGCCATCAGGTTGGTAGAGATCAGTCAGCGATAG
AATATTATGAACGAGGAACGGTAGCCATAGCAACAAGTATGACGCAACAA
TCGTGACGCATGTTTTGGTTGCTTTAAGGGaatgtttttgctttttcaaT
GTCTCGACATCCGATGCTTTGTACAAGCTTCGTATATTTTCTTGATGTCG
CTTAGCAACCAGCAGAACGCTTGCATTTGTAAAAATCAGAACCATATATG
TCACCAACAACAAAATGGTAGTTAGTGAGGTGAAAAATCGCTGGCTAATC
TGGAATCGAGCGACTGATAGAATCGTGGAATCAAAGATGGCGACCAAAAC
CCATGAACACGTGATTACTCCTATCACGTGACTGCTACGAAGGTGCTGAT
AGGTCATCGGTGAGTGAATTTGGACATAGCGATCCATAGTTGCCAAAAGC
ATACCGAGAAACAGACCCAGTAAGAATCCATTGTTGACTATAGGTGCTAT
GTTATCATAAGTGTGTTGTGTGACAATAATTGTAATAGCCATCCAGAAAT
GAGCCACTTGCATGTTCATGAATAGCTTAGTAGAATGTCTCTTCAAGCAT
TTCTTATTCTTCACCAAGAAGAGAAAGAGAGATGTGATGAGAATCATAGC
TATGAGAGCTTGTGTTTGGTACGCGATCGACACCACTTCGTTTTGTATGC
GTAGAGATGTTTCATTGAGGCTGTTTTCTGAGCCACGTAACGGACGCGTT
AGGACGAGGCTTCCCCGGATGATATCCGGCTTGGTGCGGTTTTTCGTCTC
CGAAAACATTGGTCGAACAAGAGAAAACTCCATCCTCGGTTTAGTTATAT
TGCCATGAAATTCACTCGGCTGGTTTACTTTTAATTGCAAATGATGTAGT
GGtataattttctttgaaatccTAATCGTCTTTCACTGACGGCTCTGGTC
TATCTTTCCGTTCTCTCCCcgttttttaaatgatcaactTTACTTGCACC
TGGTATCGTGACTTCCACGTCTTTTCG Run BLAST on NCBI protein sequence of TCONS_00002779-protein >TCONS_00002779-protein ID=TCONS_00002779-protein|Name=TCONS_00002779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MEFSLVRPMFSETKNRTKPDIIRGSLVLTRPLRGSENSLNETSLRIQNEV
VSIAYQTQALIAMILITSLFLFLVKNKKCLKRHSTKLFMNMQVAHFWMAI
TIIVTQHTYDNIAPIVNNGFLLGLFLGMLLATMDRYVQIHSPMTYQHLRS
SHVIGVITCSWVLVAIFDSTILSVARFQISQRFFTSLTTILLLVTYMVLI
FTNASVLLVAKRHQENIRSLYKASDVETLKKQKHSLKATKTCVTIVASYL
LLWLPFLVHNILSLTDLYQPDGRKLFSQLAEISALSNAIVDQILFVAFHR
EVKKTVGKCLRGGSGDWDYGSNRTCSTSQNRKITPPSVSASRTNSKPTQT
VLEAIKEED Run BLAST on NCBI transcript from alignment at sc0000021:722519..723945 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002779 ID=TCONS_00002779|Name=TCONS_00002779|organism=Clytia hemisphaerica|type=transcript|length=1427bp|location=Sequence derived from alignment at sc0000021:722519..723945 (Clytia hemisphaerica)
CGAAAAGACGTGGAAGTCACGATACCAGGTGCAAGTAAagttgatcattt
aaaaaacgGGGAGAGAACGGAAAGATAGACCAGAGCCGTCAGTGAAAGAC
GATTAggatttcaaagaaaattataCCACTACATCATTTGCAATTAAAAG
TAAACCAGCCGAGTGAATTTCATGGCAATATAACTAAACCGAGGATGGAG
TTTTCTCTTGTTCGACCAATGTTTTCGGAGACGAAAAACCGCACCAAGCC
GGATATCATCCGGGGAAGCCTCGTCCTAACGCGTCCGTTACGTGGCTCAG
AAAACAGCCTCAATGAAACATCTCTACGCATACAAAACGAAGTGGTGTCG
ATCGCGTACCAAACACAAGCTCTCATAGCTATGATTCTCATCACATCTCT
CTTTCTCTTCTTGGTGAAGAATAAGAAATGCTTGAAGAGACATTCTACTA
AGCTATTCATGAACATGCAAGTGGCTCATTTCTGGATGGCTATTACAATT
ATTGTCACACAACACACTTATGATAACATAGCACCTATAGTCAACAATGG
ATTCTTACTGGGTCTGTTTCTCGGTATGCTTTTGGCAACTATGGATCGCT
ATGTCCAAATTCACTCACCGATGACCTATCAGCACCTTCGTAGCAGTCAC
GTGATAGGAGTAATCACGTGTTCATGGGTTTTGGTCGCCATCTTTGATTC
CACGATTCTATCAGTCGCTCGATTCCAGATTAGCCAGCGATTTTTCACCT
CACTAACTACCATTTTGTTGTTGGTGACATATATGGTTCTGATTTTTACA
AATGCAAGCGTTCTGCTGGTTGCTAAGCGACATCAAGAAAATATACGAAG
CTTGTACAAAGCATCGGATGTCGAGACAttgaaaaagcaaaaacattCCC
TTAAAGCAACCAAAACATGCGTCACGATTGTTGCGTCATACTTGTTGCTA
TGGCTACCGTTCCTCGTTCATAATATTCTATCGCTGACTGATCTCTACCA
ACCTGATGGCAGAAAACTCTTTTCGCAGCTAGCAGAAATTTCAGCGCTAT
CGAATGCTATTGTTGATCAAATTTTGTTTGTAGCTTTCCATAGAGAAGTC
AAAAAGACAGTTGGAAAATGCTTAAGAGGTGGTTCAGGAGATTGGGATTA
CGGCTCGAATAGAACATGTTCGACCAGTCAGAATCGAAAAATCACACCAC
CGTCAGTCTCGGCGTCAAGAACAAACTCGAAGCCGACTCAAACAGTGTTA
GAGGCGATCAAAGAAGAAGACTGATTGACTAATGTTTATTATGAGAACCA
GATTATGTGATCATGAAGATGAAGTTTATCGAACTATGGAATTCAAACTG
TAGAGGTTCGGATTAGAGAAGTGACAGTATTATTTAaatttaacaaagga
aaaaagtACATGTCACTtatataattt Coding sequence (CDS) from alignment at sc0000021:722519..723945 >TCONS_00002779 ID=TCONS_00002779|Name=TCONS_00002779|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000021:722519..723945 (Clytia hemisphaerica)
ATGGAGTTTTCTCTTGTTCGACCAATGTTTTCGGAGACGAAAAACCGCAC
CAAGCCGGATATCATCCGGGGAAGCCTCGTCCTAACGCGTCCGTTACGTG
GCTCAGAAAACAGCCTCAATGAAACATCTCTACGCATACAAAACGAAGTG
GTGTCGATCGCGTACCAAACACAAGCTCTCATAGCTATGATTCTCATCAC
ATCTCTCTTTCTCTTCTTGGTGAAGAATAAGAAATGCTTGAAGAGACATT
CTACTAAGCTATTCATGAACATGCAAGTGGCTCATTTCTGGATGGCTATT
ACAATTATTGTCACACAACACACTTATGATAACATAGCACCTATAGTCAA
CAATGGATTCTTACTGGGTCTGTTTCTCGGTATGCTTTTGGCAACTATGG
ATCGCTATGTCCAAATTCACTCACCGATGACCTATCAGCACCTTCGTAGC
AGTCACGTGATAGGAGTAATCACGTGTTCATGGGTTTTGGTCGCCATCTT
TGATTCCACGATTCTATCAGTCGCTCGATTCCAGATTAGCCAGCGATTTT
TCACCTCACTAACTACCATTTTGTTGTTGGTGACATATATGGTTCTGATT
TTTACAAATGCAAGCGTTCTGCTGGTTGCTAAGCGACATCAAGAAAATAT
ACGAAGCTTGTACAAAGCATCGGATGTCGAGACAttgaaaaagcaaaaac
attCCCTTAAAGCAACCAAAACATGCGTCACGATTGTTGCGTCATACTTG
TTGCTATGGCTACCGTTCCTCGTTCATAATATTCTATCGCTGACTGATCT
CTACCAACCTGATGGCAGAAAACTCTTTTCGCAGCTAGCAGAAATTTCAG
CGCTATCGAATGCTATTGTTGATCAAATTTTGTTTGTAGCTTTCCATAGA
GAAGTCAAAAAGACAGTTGGAAAATGCTTAAGAGGTGGTTCAGGAGATTG
GGATTACGGCTCGAATAGAACATGTTCGACCAGTCAGAATCGAAAAATCA
CACCACCGTCAGTCTCGGCGTCAAGAACAAACTCGAAGCCGACTCAAACA
GTGTTAGAGGCGATCAAAGAAGAAGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002779-exon-sc0000021-1491911889:722519..723945 | TCONS_00002779-exon-sc0000021-1491911889:722519..723945 | Clytia hemisphaerica | exon |
| TCONS_00002779-exon-sc0000021-1510915933:722519..723945 | TCONS_00002779-exon-sc0000021-1510915933:722519..723945 | Clytia hemisphaerica | exon |
| TCONS_00002779-exon-sc0000021-1575043694:722519..723945 | TCONS_00002779-exon-sc0000021-1575043694:722519..723945 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:722519..723945 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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