TCONS_00002764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002764
Unique NameTCONS_00002764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002764 ID=TCONS_00002764|Name=TCONS_00002764|organism=Clytia hemisphaerica|type=transcript|length=411bp
CAGCCGATACAACCCACACTACTTCCTCCAATGCTCCAACGGATTAGCTT
ACTGTCAAGCTTGCTGGCCATTGTCCTTGGAGTTCAGCGAACCATGCAAC
CAATGTTTGTACAACCGAAAAGACGAATGTGTCACAACACAACCATGGGA
ACCAGCAACCACCTTCGAATGCCCAGACAAATGCCCAGCCCGTGGACCAC
ACTTCAGCGGAAATATTGAAGACGACCACAACCCACATCAATACGTCGCT
TGCTTCCACGGACAAACTGTCGGATGTATTGCTTGCCCAAAAGGATTACA
ATTCAACGAGAAATGGAACGCCTGTTTGTACCAAGGAAAATACAAGACCG
AACCAGAATCCCCACCAAAACACTAAATTAATTTtagttttataaaaatc
aaaaacgaaaa
Run BLAST on NCBI

protein sequence of TCONS_00002764-protein

>TCONS_00002764-protein ID=TCONS_00002764-protein|Name=TCONS_00002764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
SRYNPHYFLQCSNGLAYCQACWPLSLEFSEPCNQCLYNRKDECVTTQPWE
PATTFECPDKCPARGPHFSGNIEDDHNPHQYVACFHGQTVGCIACPKGLQ
FNEKWNACLYQGKYKTEPESPPKH
Run BLAST on NCBI

transcript from alignment at sc0000021:475440..475850

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002764 ID=TCONS_00002764|Name=TCONS_00002764|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0000021:475440..475850 (Clytia hemisphaerica)
ttttcgtttttgatttttataaaactaAAATTAATTTAGTGTTTTGGTGG
GGATTCTGGTTCGGTCTTGTATTTTCCTTGGTACAAACAGGCGTTCCATT
TCTCGTTGAATTGTAATCCTTTTGGGCAAGCAATACATCCGACAGTTTGT
CCGTGGAAGCAAGCGACGTATTGATGTGGGTTGTGGTCGTCTTCAATATT
TCCGCTGAAGTGTGGTCCACGGGCTGGGCATTTGTCTGGGCATTCGAAGG
TGGTTGCTGGTTCCCATGGTTGTGTTGTGACACATTCGTCTTTTCGGTTG
TACAAACATTGGTTGCATGGTTCGCTGAACTCCAAGGACAATGGCCAGCA
AGCTTGACAGTAAGCTAATCCGTTGGAGCATTGGAGGAAGTAGTGTGGGT
TGTATCGGCTG

Coding sequence (CDS) from alignment at sc0000021:475440..475850

>TCONS_00002764 ID=TCONS_00002764|Name=TCONS_00002764|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000021:475440..475850 (Clytia hemisphaerica)
TTAGTGTTTTGGTGGGGATTCTGGTTCGGTCTTGTATTTTCCTTGGTACA
AACAGGCGTTCCATTTCTCGTTGAATTGTAATCCTTTTGGGCAAGCAATA
CATCCGACAGTTTGTCCGTGGAAGCAAGCGACGTATTGATGTGGGTTGTG
GTCGTCTTCAATATTTCCGCTGAAGTGTGGTCCACGGGCTGGGCATTTGT
CTGGGCATTCGAAGGTGGTTGCTGGTTCCCATGGTTGTGTTGTGACACAT
TCGTCTTTTCGGTTGTACAAACATTGGTTGCATGGTTCGCTGAACTCCAA
GGACAATGGCCAGCAAGCTTGACAGTAAGCTAATCCGTTGGAGCATTGGA
GGAAGTAGTGTGGGTTGTATCGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001492XLOC_001492Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002764-proteinTCONS_00002764-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002764-exon-sc0000021-1491911889:475440..475850TCONS_00002764-exon-sc0000021-1491911889:475440..475850Clytia hemisphaericaexon
TCONS_00002764-exon-sc0000021-1510915933:475440..475850TCONS_00002764-exon-sc0000021-1510915933:475440..475850Clytia hemisphaericaexon
TCONS_00002764-exon-sc0000021-1575043694:475440..475850TCONS_00002764-exon-sc0000021-1575043694:475440..475850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:475440..475850 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.14525	0	0	0.870116	0	0.189434	0	0.0646626	0.248433	0	0.256148	21.2277	27.7628	500.522	104.79	11.8775	0	0	0	0	0	0.280705	0	0	0.168293	0	0.48027	0.472839	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top