TCONS_00002762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002762
Unique NameTCONS_00002762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002762 ID=TCONS_00002762|Name=TCONS_00002762|organism=Clytia hemisphaerica|type=transcript|length=772bp
ATGCTCAACAGCTACTCTGGACTATAACTCTCTATAAGGTGGTTCCTCCC
CCCATTGTATACCATagttatgttttttttatgaatagaatgTGAATGTG
GTGGTCAGTGGTGCATGCGAAAACGCCTAATAATACCATGTTTAAACCGA
TTTCAACTTTCCAAGACATTGTAAGGTAAAAAATTTAACACAAAGTGATG
GTGCtcttaatttttacaaaataatttgcagtCTCGACTTCTGCAACATT
GACATTTACATCCTCCTGGAGGGGACAAAAAGTAGTAAATTGCTTGTTTG
AAGGCAGTAAAACTGGCAATTTTCAAGAGCTGTGCGAGTTGAAAATGGCC
TATCCGAGTTTACAAATATATATTTCTGGATAGCACAATGTTTAAGGATT
CCAAAAAACTTTGACTTGAATGCTAGATACTTATCTTTCGTGTGAAATGG
ACATCCTCCCAGACACCAGTTTTGAATTGTAAAAATTGCACTACTTGTCT
GCAATATTGAATATCTTTTGCACAAGGCAAGGTTTTCCTCTGATTTCTTT
TGCAAGGGAAACCCAAATGCATGaacaaaccaatcaaacaagaGTTCTCT
CTATAATTGAGAGGAAAACCCTCAAAAAAGAGGATAAAGTTGACTGAACA
TGAACAGCACTGTACATAATCGCCATCGCAATTTTATTTCCCATCTacca
aaatccgccattttaaTAACATATCCCGGAACCATCAAAGGGTGCCGCTT
TGaatagaaaaacaataaaacc
Run BLAST on NCBI

transcript from alignment at sc0000021:445225..445996

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002762 ID=TCONS_00002762|Name=TCONS_00002762|organism=Clytia hemisphaerica|type=transcript|length=772bp|location=Sequence derived from alignment at sc0000021:445225..445996 (Clytia hemisphaerica)
ggttttattgtttttctattCAAAGCGGCACCCTTTGATGGTTCCGGGAT
ATGTTAttaaaatggcggattttggtAGATGGGAAATAAAATTGCGATGG
CGATTATGTACAGTGCTGTTCATGTTCAGTCAACTTTATCCTCTTTTTTG
AGGGTTTTCCTCTCAATTATAGAGAGAACtcttgtttgattggtttgttC
ATGCATTTGGGTTTCCCTTGCAAAAGAAATCAGAGGAAAACCTTGCCTTG
TGCAAAAGATATTCAATATTGCAGACAAGTAGTGCAATTTTTACAATTCA
AAACTGGTGTCTGGGAGGATGTCCATTTCACACGAAAGATAAGTATCTAG
CATTCAAGTCAAAGTTTTTTGGAATCCTTAAACATTGTGCTATCCAGAAA
TATATATTTGTAAACTCGGATAGGCCATTTTCAACTCGCACAGCTCTTGA
AAATTGCCAGTTTTACTGCCTTCAAACAAGCAATTTACTACTTTTTGTCC
CCTCCAGGAGGATGTAAATGTCAATGTTGCAGAAGTCGAGactgcaaatt
attttgtaaaaattaagaGCACCATCACTTTGTGTTAAATTTTTTACCTT
ACAATGTCTTGGAAAGTTGAAATCGGTTTAAACATGGTATTATTAGGCGT
TTTCGCATGCACCACTGACCACCACATTCAcattctattcataaaaaaaa
cataactATGGTATACAATGGGGGGAGGAACCACCTTATAGAGAGTTATA
GTCCAGAGTAGCTGTTGAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001490XLOC_001490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002762-exon-sc0000021-1491911889:445225..445996TCONS_00002762-exon-sc0000021-1491911889:445225..445996Clytia hemisphaericaexon
TCONS_00002762-exon-sc0000021-1510915933:445225..445996TCONS_00002762-exon-sc0000021-1510915933:445225..445996Clytia hemisphaericaexon
TCONS_00002762-exon-sc0000021-1575043694:445225..445996TCONS_00002762-exon-sc0000021-1575043694:445225..445996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:445225..445996 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252062	0.18435	0.713494	0.698043	0.08498	0.268609	0.0810164	0.22754	0.212408	0.0657754	0.19153	0.20984	0.209548	0	0.250476	0.0383999	0.236528	0.14546	0	0.140194	0.182781	0.445771	0.144505	0.0656879	0.067657	0.0603822	0.172814	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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