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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002756 ID=TCONS_00002756|Name=TCONS_00002756|organism=Clytia hemisphaerica|type=transcript|length=1569bp
CTGCCCTAAATGCTGCTGTaatagcctccttttcaaaaattttctcaacg
TAAGAGTCGTAGtatctattttattttattttattttaatagatTTCAAA
GTGTGATATCTCAACTTATAAGAAATGATTAGCcaaattttttaaaggtt
ttgcttAGCACCATGGTATAGGAAgcttcttatttaaaaaatattgttta
ttATTTGTTTGTCTCATTTAGAATCTTTTCAAACGGAAATAGGATGTCGA
ATCCAGAAACAATTGCTTCAGTCACCATTTTGTCGTTGTTAATGCTAACA
TCGTTACTTGGCAACGGACTAACAATCATCGCAACATTAACCAATCAAAA
GCTTCGTTCAATCACTGGTTTATTAATATGTAACCTGGCTGTTTCCGATT
TGCTCATCTCCGGAATCAATTTACCAATTCGGATCTGCCAATATTTCGGA
ATAAACTGGTCGGCAGGTGGTATATCAGAATGTCGAGTCAGCGTTGCCAT
GACATTATTCCTTTTCACTGCCTCCAACACAAATTTACTATTGATTACTG
CAGATCGATATCTCGGTGTAACCAAGCCCATAAAATATCGTCAAAAAATG
AACATTAAAATTCTACGTGTAGTTATAGCCATAGGTTGGTTCTACTCGTT
CATTATTTCAGTATTTCCGTATTTCATTGTTGGTGGAAAAACAGATGCAA
ATGATTCAGTAGCGGTGTGTACATTCCAAACTGTCTTTACACCGGCTTAC
ATTCTGTTCATTGAATTCGGGACTTTCTTTGTACCCTTTTTCGTCATGGT
GGGTAtgtacatcaagataattcacAAGCTGGTAGCTCCAACTAGAATTG
GCATAGGTTCTGATAATACCAATCGAAACAGTGTTGCCAGATGCACTCAT
AAAGAACATCGTCGAAAATCAGTTGGAGGAAAAACCATGACTTACAGACA
AGAAAAGAAACTAGCTAAAGGCGTTTTTGTGATATTGAGTGTTTATTCTA
TCTCTTTAATACCAATTGTTATTATGGAGATAATAGATGTCATTAACCAA
TCACCAATCATACCTTTGATTGCAATTAAAATCGCAATTACTATAGTTTA
TTTAAATGCTGCTGTCAATACACCAATTTACGCATTGAGTAGTGAGAAGC
ATAGAGAAGCTTTCGCTAAATTGTTACGAATCAGAGCTATAGATCGGGAG
AGAAGAAGAACAGAAGCTAAGCTATCATCAAATATTGGATTGTCTTCAGC
TAGTAATGGTTCAGCAGCACCACCAGTTCAAAGAATTGAAGTCAAAGAAC
AGTCGAATGATCTGGTTTgagttttttccattttcactACGGTCGAATGT
GAATGGAATATctcaactttttattttttttacctattttttatatatat
cGAGATTTAACATtgattttattactttacactaCTTACACATTTTTATT
GTTAACCGACAGTAAACTGATATAGTTTAAGTCAGGGCCCACGCGTCGCC
GGGGTTTTAGGGTTTCTGGGCAAAATCAGTCTGAAATAACGTCATTCCAA
GGCATTACAGggtcaaaat Run BLAST on NCBI protein sequence of TCONS_00002756-protein >TCONS_00002756-protein ID=TCONS_00002756-protein|Name=TCONS_00002756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MSNPETIASVTILSLLMLTSLLGNGLTIIATLTNQKLRSITGLLICNLAV
SDLLISGINLPIRICQYFGINWSAGGISECRVSVAMTLFLFTASNTNLLL
ITADRYLGVTKPIKYRQKMNIKILRVVIAIGWFYSFIISVFPYFIVGGKT
DANDSVAVCTFQTVFTPAYILFIEFGTFFVPFFVMVGMYIKIIHKLVAPT
RIGIGSDNTNRNSVARCTHKEHRRKSVGGKTMTYRQEKKLAKGVFVILSV
YSISLIPIVIMEIIDVINQSPIIPLIAIKIAITIVYLNAAVNTPIYALSS
EKHREAFAKLLRIRAIDRERRRTEAKLSSNIGLSSASNGSAAPPVQRIEV
KEQSNDLV Run BLAST on NCBI transcript from alignment at sc0000021:252592..254160 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002756 ID=TCONS_00002756|Name=TCONS_00002756|organism=Clytia hemisphaerica|type=transcript|length=1569bp|location=Sequence derived from alignment at sc0000021:252592..254160 (Clytia hemisphaerica)
attttgaccCTGTAATGCCTTGGAATGACGTTATTTCAGACTGATTTTGC
CCAGAAACCCTAAAACCCCGGCGACGCGTGGGCCCTGACTTAAACTATAT
CAGTTTACTGTCGGTTAACAATAAAAATGTGTAAGtagtgtaaagtaata
aaatcaATGTTAAATCTCgatatatataaaaaataggtaaaaaaaataaa
aagttgagATATTCCATTCACATTCGACCGTagtgaaaatggaaaaaact
cAAACCAGATCATTCGACTGTTCTTTGACTTCAATTCTTTGAACTGGTGG
TGCTGCTGAACCATTACTAGCTGAAGACAATCCAATATTTGATGATAGCT
TAGCTTCTGTTCTTCTTCTCTCCCGATCTATAGCTCTGATTCGTAACAAT
TTAGCGAAAGCTTCTCTATGCTTCTCACTACTCAATGCGTAAATTGGTGT
ATTGACAGCAGCATTTAAATAAACTATAGTAATTGCGATTTTAATTGCAA
TCAAAGGTATGATTGGTGATTGGTTAATGACATCTATTATCTCCATAATA
ACAATTGGTATTAAAGAGATAGAATAAACACTCAATATCACAAAAACGCC
TTTAGCTAGTTTCTTTTCTTGTCTGTAAGTCATGGTTTTTCCTCCAACTG
ATTTTCGACGATGTTCTTTATGAGTGCATCTGGCAACACTGTTTCGATTG
GTATTATCAGAACCTATGCCAATTCTAGTTGGAGCTACCAGCTTgtgaat
tatcttgatgtacaTACCCACCATGACGAAAAAGGGTACAAAGAAAGTCC
CGAATTCAATGAACAGAATGTAAGCCGGTGTAAAGACAGTTTGGAATGTA
CACACCGCTACTGAATCATTTGCATCTGTTTTTCCACCAACAATGAAATA
CGGAAATACTGAAATAATGAACGAGTAGAACCAACCTATGGCTATAACTA
CACGTAGAATTTTAATGTTCATTTTTTGACGATATTTTATGGGCTTGGTT
ACACCGAGATATCGATCTGCAGTAATCAATAGTAAATTTGTGTTGGAGGC
AGTGAAAAGGAATAATGTCATGGCAACGCTGACTCGACATTCTGATATAC
CACCTGCCGACCAGTTTATTCCGAAATATTGGCAGATCCGAATTGGTAAA
TTGATTCCGGAGATGAGCAAATCGGAAACAGCCAGGTTACATATTAATAA
ACCAGTGATTGAACGAAGCTTTTGATTGGTTAATGTTGCGATGATTGTTA
GTCCGTTGCCAAGTAACGATGTTAGCATTAACAACGACAAAATGGTGACT
GAAGCAATTGTTTCTGGATTCGACATCCTATTTCCGTTTGAAAAGATTCT
AAATGAGACAAACAAATaataaacaatattttttaaataagaagcTTCCT
ATACCATGGTGCTaagcaaaacctttaaaaaatttgGCTAATCATTTCTT
ATAAGTTGAGATATCACACTTTGAAatctattaaaataaaataaaataaa
atagataCTACGACTCTTAcgttgagaaaatttttgaaaaggaggctatt
ACAGCAGCATTTAGGGCAG Coding sequence (CDS) from alignment at sc0000021:252592..254160 >TCONS_00002756 ID=TCONS_00002756|Name=TCONS_00002756|organism=Clytia hemisphaerica|type=CDS|length=1077bp|location=Sequence derived from alignment at sc0000021:252592..254160 (Clytia hemisphaerica)
tcAAACCAGATCATTCGACTGTTCTTTGACTTCAATTCTTTGAACTGGTG
GTGCTGCTGAACCATTACTAGCTGAAGACAATCCAATATTTGATGATAGC
TTAGCTTCTGTTCTTCTTCTCTCCCGATCTATAGCTCTGATTCGTAACAA
TTTAGCGAAAGCTTCTCTATGCTTCTCACTACTCAATGCGTAAATTGGTG
TATTGACAGCAGCATTTAAATAAACTATAGTAATTGCGATTTTAATTGCA
ATCAAAGGTATGATTGGTGATTGGTTAATGACATCTATTATCTCCATAAT
AACAATTGGTATTAAAGAGATAGAATAAACACTCAATATCACAAAAACGC
CTTTAGCTAGTTTCTTTTCTTGTCTGTAAGTCATGGTTTTTCCTCCAACT
GATTTTCGACGATGTTCTTTATGAGTGCATCTGGCAACACTGTTTCGATT
GGTATTATCAGAACCTATGCCAATTCTAGTTGGAGCTACCAGCTTgtgaa
ttatcttgatgtacaTACCCACCATGACGAAAAAGGGTACAAAGAAAGTC
CCGAATTCAATGAACAGAATGTAAGCCGGTGTAAAGACAGTTTGGAATGT
ACACACCGCTACTGAATCATTTGCATCTGTTTTTCCACCAACAATGAAAT
ACGGAAATACTGAAATAATGAACGAGTAGAACCAACCTATGGCTATAACT
ACACGTAGAATTTTAATGTTCATTTTTTGACGATATTTTATGGGCTTGGT
TACACCGAGATATCGATCTGCAGTAATCAATAGTAAATTTGTGTTGGAGG
CAGTGAAAAGGAATAATGTCATGGCAACGCTGACTCGACATTCTGATATA
CCACCTGCCGACCAGTTTATTCCGAAATATTGGCAGATCCGAATTGGTAA
ATTGATTCCGGAGATGAGCAAATCGGAAACAGCCAGGTTACATATTAATA
AACCAGTGATTGAACGAAGCTTTTGATTGGTTAATGTTGCGATGATTGTT
AGTCCGTTGCCAAGTAACGATGTTAGCATTAACAACGACAAAATGGTGAC
TGAAGCAATTGTTTCTGGATTCGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002756-exon-sc0000021-1491911889:252592..254160 | TCONS_00002756-exon-sc0000021-1491911889:252592..254160 | Clytia hemisphaerica | exon |
| TCONS_00002756-exon-sc0000021-1510915933:252592..254160 | TCONS_00002756-exon-sc0000021-1510915933:252592..254160 | Clytia hemisphaerica | exon |
| TCONS_00002756-exon-sc0000021-1575043694:252592..254160 | TCONS_00002756-exon-sc0000021-1575043694:252592..254160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:252592..254160 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00002756 vs. Swiss-Prot (Human)
Match: ADA1A (Alpha-1A adrenergic receptor OS=Homo sapiens GN=ADRA1A PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 4.280e-20 Identity = 79/301 (26.25%), Postives = 147/301 (48.84%), Query Frame = 1
Query: 325 IIATLTNQKLRSITGLLICNLAVSDLLISGINLPIR-ICQYFGINWSAGGISECRVSVAMTLFLFTASNTNLLLITADRYLGVTKPIKYRQKMNIKILRVVIAIGWFYSFIISVFPYFIVGGKTDANDSVAVCTFQTVFTPAYILFIEFGTFFVPFFVMVGMYIKIIHKLVAPTRIGIGSD-NTNRNSVARCTHKEHRRKSVGG---------------KTMTYRQEKKLAKGVFVILSVYSISLXXXXXXXXXXXXNQSXXXXXXXXXXXXXXVYLNAAVNTPIYALSSEKHREAFAKLL 1176
I++ ++ L S+T I NLAV+DLL++ LP I + G W+ G + C + A+ + TAS L +I+ DRY+GV+ P++Y + + + + W S +IS+ P F G + A + +C Q P Y+LF G+F++P +++ MY ++ +R G+ S T+++ + T + HR+ + G + + + +EKK AK + +++ + + +P ++ I KI + YLN+ +N IY SS++ ++AF +L
Sbjct: 48 ILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGY-WAFGRVF-CNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRRGLMALLCVWALSLVISIGPLF--GWRQPAPEDETIC--QINEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESR-GLKSGLKTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFKPSETVFKIVFWLGYLNSCINPIIYPCSSQEFKKAFQNVL 341
The following BLAST results are available for this feature:
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