TCONS_00002750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002750
Unique NameTCONS_00002750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002750 ID=TCONS_00002750|Name=TCONS_00002750|organism=Clytia hemisphaerica|type=transcript|length=471bp
gatttttattccaaattgttaCTCTATAAGTTACTAAAAGATGCCACTTT
AAGACTCTGAACCTGACTTTCTCTGAAACCCCATACATTTTGTTTAATTA
GTGCCCAAATTTGAAATTCACGCCAACTGGTTACAGCACTATAGAATGTT
TATGTTTAATCAGACTTGTGATCTGATTCTCACGTCTGAAATGATGCAGC
TTACTCTTTCTTTCTGCCTTCAATTCTTTTACTTCCCTTAAATATTTGTC
CCCATGCAATTGTAAGTACATTAAATATTTTCCAGCTTGATACCGGCAGA
TCTATTGGCATCCTGCGGGCTAAACTCCTGTCCATCAGTCTATCAATTAC
AGCCAGCAATAAGCCGGTAGACAGTTTGCCAGCAACATTTGTGtaaattc
tgttttttttaaagaatttggcCTATTGGGAGACTTTTGCTTTCTTTGCT
AAGTTAAAATCCTAAGCTTGC
Run BLAST on NCBI

transcript from alignment at sc0000021:21481..21951

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002750 ID=TCONS_00002750|Name=TCONS_00002750|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at sc0000021:21481..21951 (Clytia hemisphaerica)
GCAAGCTTAGGATTTTAACTTAGCAAAGAAAGCAAAAGTCTCCCAATAGg
ccaaattctttaaaaaaaacagaatttaCACAAATGTTGCTGGCAAACTG
TCTACCGGCTTATTGCTGGCTGTAATTGATAGACTGATGGACAGGAGTTT
AGCCCGCAGGATGCCAATAGATCTGCCGGTATCAAGCTGGAAAATATTTA
ATGTACTTACAATTGCATGGGGACAAATATTTAAGGGAAGTAAAAGAATT
GAAGGCAGAAAGAAAGAGTAAGCTGCATCATTTCAGACGTGAGAATCAGA
TCACAAGTCTGATTAAACATAAACATTCTATAGTGCTGTAACCAGTTGGC
GTGAATTTCAAATTTGGGCACTAATTAAACAAAATGTATGGGGTTTCAGA
GAAAGTCAGGTTCAGAGTCTTAAAGTGGCATCTTTTAGTAACTTATAGAG
taacaatttggaataaaaatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001478XLOC_001478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002750-exon-sc0000021-1491911889:21481..21951TCONS_00002750-exon-sc0000021-1491911889:21481..21951Clytia hemisphaericaexon
TCONS_00002750-exon-sc0000021-1510915933:21481..21951TCONS_00002750-exon-sc0000021-1510915933:21481..21951Clytia hemisphaericaexon
TCONS_00002750-exon-sc0000021-1575043694:21481..21951TCONS_00002750-exon-sc0000021-1575043694:21481..21951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:21481..21951 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48952	1.71661	0.766598	0.749996	0.365219	0.288601	0	0.325967	0.114108	0	0.274379	0.180366	0.0900578	0.280578	0	0.0825158	0	0	0	0	0.261847	0	0	0	0.436155	0.129753	0	0.198158	1.05207	0.153128
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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