TCONS_00002747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002747
Unique NameTCONS_00002747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002747 ID=TCONS_00002747|Name=TCONS_00002747|organism=Clytia hemisphaerica|type=transcript|length=1612bp
ATTTGTTAACGTTGTTTTAGAGATTGTCGCGTGCATCATTCAAAAACTTC
ATGTAAAAAtgcattttgttgatttcttggAAGACTTTCGTTTGGTTGCA
ATCTTCACTGTAATATGCGCTGCGATTATCTGGCATAACTTGAAATTACT
TGCAAACGTGTTAGGTAACTCACACTATGGGAAAACAAAATACGTTTTAG
TTACTGGCTGTGATTCAGGATTTGGTTTTGCAATTGCTTTGGATTTAGTG
GAATCGAAGTGTAAAGTTTTCGCTGGATGTTTAACTCAAGAGGGTGTTGA
CAGATTGGAAAAGAATAAAGATTTCGATGGGTTCGCTTTTTTGATGGATG
TCACGAAAAATGAAGATGTCGAAAATGCGAGGAAATTCATTGAAGAAAAA
ACCGAAAATGATGGACTGTACGCAGTTGTCAATAATGCTGGAATTGTTAA
GCTTGGAAGAATCAGTTGGCAAAGTATGGAAGATTTAGAAAAAGTTATGG
ATGTCAATTTTTGGGGGACGGTTCGCACAACAAAAGCAATGCTTCCTTTG
TTGACTAAAGCTAAAGGGAGAATCGTCAATATGTCAAGCTGTTGTGGGTT
TGTACCGAACGCTTTAAACGGATCTTACACAATCTCCAAACATGCCATCG
AAGCTTTCTCATACTGCTTAATGGAAGAGGTCGTCCATGATGGAATCTCT
GTGCACATAATTTGTCCAACTGGTCAAAAAACTAACATCGTCGTTCCTGA
GATACAACGCAAACAATGGGAGGATGATTTCAATAAACAAAATGATGATA
TCAAACAAAGATATGgcccaaatttgaccaaatATTTGAACAATTTGGTA
AAGAAAATTAATCTAGTACCTGAAGGAACTGCTCAAGTCGTATCAAAAGT
CAATCACGCTATCATGTCATCTAACCCTCACATAACATACACAGTTGGAC
CTTATTCGTGGATTTACAAGATTCTAGCATGTCTGCCAGTTTCATATTAT
CAATCGTTTGCACATTCCATTTTCCCACAGCTCGAACCAATAGTAGATCG
ATTTGGACGAAGATAAGTTAATTACATATTAAGGAATTTTCTCGTACATT
ATTAGCAGTTTTTAATGGTGTTATTCATATCGCTCCACgcatttttttaa
aacatctGGTTAAATCACATCAAGaaagttgaaatttcaaatttgaaatg
tgTTGACTCAACAAAAACCATTGATTTTAAAACCTATACTACTATGTAGT
AGGTTGTTTTAGTAGAAGAAAGCGGGCGGGTATTCGGTTTATTTTGGAGG
CAAAaggcttaagggctctgaccatagtgaatttttcataattgccgtgt
ttaaaatgtgttttctgactgatgtaaccaacaaaactatggcatgttat
acattttctgttagacaaactattcctgaatctgaaaattcaaaaattgc
attgacaaaatttgatgaagaagaaaatgaagacttttgtgaggaagagt
atttcaactttgaagagcttagtttcggcgaagaaaaaacattttgaaaa
attttttgcagtagatggtgtatcttttaccgaacaataaaaatttttgc
ggaaaatttttg
Run BLAST on NCBI

protein sequence of TCONS_00002747-protein

>TCONS_00002747-protein ID=TCONS_00002747-protein|Name=TCONS_00002747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
FVNVVLEIVACIIQKLHVKMHFVDFLEDFRLVAIFTVICAAIIWHNLKLL
ANVLGNSHYGKTKYVLVTGCDSGFGFAIALDLVESKCKVFAGCLTQEGVD
RLEKNKDFDGFAFLMDVTKNEDVENARKFIEEKTENDGLYAVVNNAGIVK
LGRISWQSMEDLEKVMDVNFWGTVRTTKAMLPLLTKAKGRIVNMSSCCGF
VPNALNGSYTISKHAIEAFSYCLMEEVVHDGISVHIICPTGQKTNIVVPE
IQRKQWEDDFNKQNDDIKQRYGPNLTKYLNNLVKKINLVPEGTAQVVSKV
NHAIMSSNPHITYTVGPYSWIYKILACLPVSYYQSFAHSIFPQLEPIVDR
FGRR
Run BLAST on NCBI

transcript from alignment at sc0000021:1064730..1071852-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002747 ID=TCONS_00002747|Name=TCONS_00002747|organism=Clytia hemisphaerica|type=transcript|length=7123bp|location=Sequence derived from alignment at sc0000021:1064730..1071852- (Clytia hemisphaerica)
ATTTGTTAACGTTGTTTTAGAGATTGTCGCGTGCATCATTCAAAAACTTC
ATGTAAAAATGCATTTTGTTGATTTCTTGGAAGACTTTCGTTTGGTTGCA
ATCTTCACTGTAATATGCGCTGCGATTATCTGGCATAACTTGAAATTACT
TGCAAACGTGTTAGGTAACTCACACTATGGGAAAACAAAATACGTTTTAG
TTACTGGCTGTGATTCAGGATTTGGTTTTGCAATTGCTTTGGATTTAGTG
GAATCGAAGTGTAAAGTTTTCGCTGGATGTTTAACTCAAGAGGGTGTTGA
CAGATTGGAAAAGAATAAAGATTTCGATGGGTTCGCTTTTTTGATGGATG
TCACGAAAAATGAAGATGTCGAAAATGCGAGGAAATTCATTGAAGAAAAA
ACCGAAAATGATGGTAAAATGTTTATTATTTTACAACCATTAAGGACAAC
CTAATATCACTAAGCTAAGAAACCTTCAATTTATAAGTTAAATGGCCTAC
TCTTAGGTGCCAAATAAACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGGTCACA
CTTTCTTAGAGAAAGCGCAACTTTCGAAATTTGGTTTTTATTTTAGTAAG
TGAGGACAGCGCTAAATTCGAATTTCCCACTGTAAAAAATGTGAGTTCAA
TATTGGACTCACAGCTCGAACCCGTCTCAAATTATAAAAAAACACACGAC
GGATCTCCTGTCTAGGGGGGTTGGAAATTGTACTTCTGAAAACCCAAAAA
TAAGGTAAATATAGGTCAAAATCAGGCTATTTAGAGCAAAATAAGGGGCC
TTCTCTTTGACAGCTGAAAATATTTTAAAAAAATAATTAACGGCATTCAA
GTAAACAAGCATTTGTTTTATTTCTAGGACTGTACGCAGTTGTCAATAAT
GCTGGAATTGTTAAGCTTGGAAGAATCAGTTGGCAAAGTATGGAAGATTT
AGAAAAAGTTATGGATGTCAATTTTTGGGGGACGGTTCGCACAACAAAAG
CAATGCTTCCTTTGTTGACTAAAGCTAAAGGGAGAATCGTCAATATGTCA
AGCTGTTGTGGTATGTATAGTATGAGGCGAAATGTGACTCAGACGAAATG
TTTCGAAATTCAAATACACTCAGGTCCACTGTAAAATACCTACAGGCCCA
CAGTAAAATATCAATAGACCTTATCGGACTTTTTGATTTTTCTAAAAAAG
CGATGCATTGTGGGATTGTATCGAGTGTATTAGAATAGAAATCTCTTAGG
AATTCCTCGAGGGAATTCTATTGTAATACACTCGAAACAATCCCACAATG
CATCGCTTTTTTATAAAAATCAAAAACTCCGATAAGGTCTATTGATATTT
TATAAGAAAATACCTCCAAAATTGAAATATTAATGGTCTATTGGTCATGG
TTTTATAATTGTTTTTCTTTAAAAAGGGGCTGGATCTAGTGGTACGGATT
TGCTAGGAACTCAAACAAAGCCTGTCAAATTACACCGGGCCACTTATCAG
CGCCACCCAGTCTATCAAAAAAAGCTATAAATGGCCCCCGGGCTATGACA
GACTTCGATAGACTTGAGGTTGATAGACTGTTGATGCATACACTTTTTTC
TTTGTACTGCAAGTAACCAGGTTTAGCATTGAAATTAGCCAATTCTTTTT
ACCGGTACTATCTCTAAAAGTAAAAGCTTTATACAAAATCTGACTATGAC
AAACGGTAGCCCCTGACCCAATAAGCATAAATATGATTATAATATAAGGG
ATGCCTCAGAAATTGAGCTAGAATGCTAAGTAGCCTAAGCCCTTAGTCGA
AAATTGGCGTTGCTTATGAACAAAATTTCTGTATTTTATCATAGGGTTTG
TACCGAACGCTTTAAACGGATCTTACACAATCTCCAAACATGCCATCGAA
GCTTTCTCATACTGCTTAATGGAAGAGGTCGTCCATGATGGAATCTCTGT
GCACATAATTTGTCCAACTGGTCAAAAAACTAACATCGTCGTTCCTGAGA
TACAACGCAAACAATGGGAGGATGATTTCAATAAACAAAATGATGATATC
AAACAAAGATATGGCCCAAATTTGACCAAATGTAAGTTTTGTTTTTATTT
TATCTCTGAAAAGCAGGTATGAAAATTGTAAAGTAACATTGTGAAATATT
TTGATCGATGTATATTTGCATGCCAAGAAGTGTAAGGCTTCAGTGTCATA
AACCAGTGATTCGCGGCTCAAATCCCCACGGTTTTCATGTTCAGTTCTTA
AATAGCCAAGCAAGCTGGCTGTGGAATACGTCAAAACAATTGTCTGAAAC
AACTGTCTAAAAGTCCTAGATCACTCTGGGCCATCCAAGTGAAATATCGA
CCCTATCTTACCAATATCTTTAAATGAATGGAATCTTTATTTATTTTTTA
TAGTTTTGAACGACGCATTTGCTCGGCAAGCTAAAGTACCCGAAGGAACT
GCTCAAGTCGTATCGAAAGTCAATCACGCTATCATGTCATCTAACCCTCA
CATCAAATACGTCGTTGGACCTTTATCGTGGACCTACCAAATTCTAGCAT
GTTTACCTGTCTCTTATTTTCAATCGGCTGCACATTCTATTTTCCCTCAG
CTTAAACCCGTGATCGATCGGTTTGGACAAAGATAAATTCTACTACTAAA
TTCTATATTGAAGTATTCACAATACACGGCTGAGAAGCTTTCAACCTCAC
TGAACTTCAATCTCAAATGCCATATTATTTAAATCTTTTTTTGTGGATTT
AGGGTACAGATTTATAAAACCCGAAAAGATAGATATCGTGCTTTAAGCCA
TTGCAGGCAAAAAAATATTGGAAAAATATTGTTGCTATTTTGTTTTTGCT
TTTCGAAAACCCGTGAAGCTTCTGATTGGTCAAGTGCTGAAATTCTATTG
TAATGTCACGTGACCTAGGTAGGATTTCATACCTAACCACGGCACATCTT
CGGGCTTTAGAAATCTGTGGTTTAGGGTACATCCGTCCGTGTGAATTTTT
AGATACATATAGACATTTTAGTAATGAAATTTTAATTTCCAATTAAGACG
GCGAAAGAAAAAGAAAAGTTAAAAGAGTGTACGATATTAAATTAAATTTA
ATTTTTAATTTCTTTAAAGACCAAAGGTCGATCGGTAAAGAAATGCTTGT
GTATTCATGATATGCACTGTTGCAATGTCTTCCACCGACCGAACAGCTGA
TTGGTTGAAAGTGATGTTTGACTGATTAAACGTAACTTACNCCGTTGCAA
TGTCTTCCACCGACCGAACAGCTGATTGGTTGAAAGTGATGTTTGACTGA
TTAAACGTCACTTATAACCAATCAGATGTTGGGTCCGTGATGTAATGTCA
GAAGACATATTGGAATGGTGCATATCATGAACTTCCAGAAAATGATCATT
CTGTTGCGTGGACAACACCCCACAGCCTTTAGGGTAACCACCTAACAAAT
TGAAATTACCTTTTGAGTCTTGGATTTTGACTTTGTAAAGGGGCAATAGG
AAAAGTTTTTCCGGGAATGTGAAAGTTTACCCATTATACGGTACATGGTA
AAATCCTTATGCTTATTTCATCAAAATCAATTTATTGGGAAATATTTCAA
ATATTTGCCTTTTTCTCTGAACAAATTTTTAAAAAATTTGTGAAATTTCA
CTAAAAACTTAGCTCGGGGTGAATCATAAGCATGATTCATAAGCATATAA
TAAGCATAAGCTACGCCTGGATGCTTTGAGAACTTAAGCATACACGAGCT
TGACCAAGGGGCAGACACTTGCTTATAAAAAAAACCAAAAACAAATATAA
TGAGATTAATTTTTTCAAAATTGATTACGTCCAGAAAACGGTTATTATTA
GCCACAGTTAAATAAAAATGGTATTTCTCTTTCACTCTAAGTGAACGTGT
ATGGATAAATTATTGTAACAAAAATGCATTTTGTTGATTTCTTGGAAGAC
TTTCGTTTAGTTGCAATTTTCACTGTAATATGCGCTGCGATTATCTGGCA
TAACTTGAAATTACTTGCAAACGTGTTAGGTAACTCACACTATGGGAAAA
CAAAATATGTTTTAGTTACTGGCTGTGATTCAGGATTTGGTCTTGCAATT
GCTTTGGATTTAGTGGAATCGAAGTGTAAAGTTTTCGCTGGATGTTTAAC
TCAAGAGGGTGTTGACAGATTGGAAAAGAATAAAGATTTCGATGGGTTCG
CTTTTTTGATGGATGTCACGAAAAATGAAGATGTCGAAAATGCGAGGAAA
TTCATTGAAGAAAAAACCGAAAATGATGGTAAAATGTTTATTATTTTACA
ACCATTAAGGACAACCTAATATCACTAAGCTAAGAAACCTTCAATTTATA
AGTTAAATGGCCTACTCTTAGGTGCCAAATAAACGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAACGGCATTCAAGTAAACAAGCATTTGTTTTATTTCTAG
GACTGTACGCAGTTGTCAATAATGCTGGAATTGTTAAGCTTGGAAGAATC
AGTTGGCAAAGTATGGAAGATTTAGAAAAAGTTATGGATGTCAATTTTTG
GGGGACGGTTCGCACAACAAAAGCAATGCTTCCTTTGTTGACTAAAGCTA
AAGGAAGAATCGTCAATATGTCAAGCTCCGCTGGTATGGACTATTGTTTA
ACTTCAAATGAACGTCTGGTGATTTTTCTAAGCACTTTCAGATGGGGCCG
TCTTTGTAAACTTAGATCGAGCTTCTAATATGCCTGAAAGGGAATTGTCT
CAGCAAAGCTGTATATTGATGAAGCTGGCATGGGGGTTTGGTTTGTGTTC
AGAAGGCGAAGCTCCCAAAAATATTTGGAATATTATAGAAATTTTTGTTT
GTAAACAACAAACAGGTTTAATGTTGATTAGAGGGTAATTATACCACATT
AATATTCAGAAATGTTAGCGTAATCTACTATTTGTGGGGTCTTCATTCCA
CATCTTTTTTACTGAGAGGGATCCCTTTGTTCCTTCCTTAAGAGATTTTA
GCTTTATTGACAAACGGAGCCCCTCCCTTCTCCCCGATGGGCAAAGAATT
TTTGCACCGTTTTCAGATTTTATCAAAACGATGCTCTCCANTCTGTTGAC
AATCGGAGCCTCTCCCTTCTCCCCGCGGCTCAAAGAATATCTGCACCGTT
TCCAGATTTTGCCAAAGCGATGCTCTCTCTTTTGTTCTAGGTACCTTGCC
ATTTTCATATGCAGGATGCTACACAATCTCCAAACATGCCATCGAAGCCT
TCTCTTACTGCTTAATGGAAGAGGTTGTCCATGATGGAATCTCTGTGCAC
ATAATTCGTCCAACTGGTCAAAAAACTAATATCATTAACCCTGAGATACA
ACGCAAACAATGGGAGGACGATTTCAATAAACAAAGCCAGGAAGTCAAAC
AAAGATATGGTCCAAATTTGACCAAATGTAATTTGCTTTTTTTGTATTAT
GCATCATTTGGGACGGCTTTTATTTTTACCAAAGTGTAAAAGGTTTTAAG
CATTCGAAAAAAATCGCATTCCACTATTTTGAATCTTTGAAAGCATTTTC
TTGAATTTTTCGAGTTTAAAATTAAATCCCTATCGACGTTCCGAACTTAC
GAACACCGGACACGTCAACTCCTGTGTCGGATGCAGATACTTTTTAACAC
CAGACAATCACAACTCGAGTCCGGTGCGTCTGGTGTGAATTATTTTTGAA
ACATACGTGTCAGGTGTCAAGAAGTTCGAAAAATTAACACCGGACAAAAG
GTTTCCGATGTGGCTGAGGGACTGTCCGGTGCGTCAACAGGGTCGTCCTG
AATGATGCTCAGCAACTCCTCGTCCGTCTATTATTTCTTCATAGATTTGA
ACAATTTGGTAAAGAAAATTAATCTAGTACCTGAAGGAACTGCTCAAGTC
GTATCAAAAGTCAATCACGCTATCATGTCATCTAACCCTCACATAACATA
CACAGTTGGACCTTATTCGTGGATTTACAAGATTCTAGCATGTCTGCCAG
TTTCATATTATCAATCGTTTGCACATTCCATTTTCCCACAGCTCGAACCA
ATAGTAGATCGATTTGGACGAAGATAAGTTAATTACATATTAAGGAATTT
TCTCGTACATTATTAGCAGTTTTTAATGGTGTTATTCATATCGCTCCACG
CATTTTTTTAAAACATCTGGTTAAATCACATCAAGAAAGTTGAAATTTCA
AATTTGAAATGTGTTGACTCAACAAAAACCATTGATTTTAAAACCTATAC
TACTATGTAGTAGGTTGTTTTAGTAGAAGAAAGCGGGCGGGTATTCGGTT
TATTTTGGAGGCAAAAGGCTTAAGGGCTCTGACCATAGTGAATTTTTCAT
AATTGCCGTGTTTAAAATGTGTTTTCTGACTGATGTAACCAACAAAACTA
TGGCATGTTATACATTTTCTGTTAGACAAACTATTCCTGAATCTGAAAAT
TCAAAAATTGCATTGACAAAATTTGATGAAGAAGAAAATGAAGACTTTTG
TGAGGAAGAGTATTTCAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAA
CATTTTGAAAAATTTTTTGCAGTAGATGGTGTATCTTTTACCGAACAATA
AAAATTTTTGCGGAAAATTTTTG

Coding sequence (CDS) from alignment at sc0000021:1064730..1071852-

>TCONS_00002747 ID=TCONS_00002747|Name=TCONS_00002747|organism=Clytia hemisphaerica|type=CDS|length=4260bp|location=Sequence derived from alignment at sc0000021:1064730..1071852- (Clytia hemisphaerica)
ATTTGAACAATTTGGTAAAGAAAATTAATCTAGTACCTGAAGGAACTGCT
CAAGTCGTATCAAAAGTCAATCACGCTATCATGTCATCTAACCCTCACAT
AACATACACAGTTGGACCTTATTCGTGGATTTACAAGATTCTAGCATGTC
TGCCAGTTTCATATTATCAATCGTTTGCACATTCCATTTTCCCACAGCTC
GAACCAATAGTAGATCGATTTGGACGAAGATAAGGTTTGTACCGAACGCT
TTAAACGGATCTTACACAATCTCCAAACATGCCATCGAAGCTTTCTCATA
CTGCTTAATGGAAGAGGTCGTCCATGATGGAATCTCTGTGCACATAATTT
GTCCAACTGGTCAAAAAACTAACATCGTCGTTCCTGAGATACAACGCAAA
CAATGGGAGGATGATTTCAATAAACAAAATGATGATATCAAACAAAGATA
TGGCCCAAATTTGACCAAATGACTGTACGCAGTTGTCAATAATGCTGGAA
TTGTTAAGCTTGGAAGAATCAGTTGGCAAAGTATGGAAGATTTAGAAAAA
GTTATGGATGTCAATTTTTGGGGGACGGTTCGCACAACAAAAGCAATGCT
TCCTTTGTTGACTAAAGCTAAAGGGAGAATCGTCAATATGTCAAGCTGTT
GTGTTTGTTAACGTTGTTTTAGAGATTGTCGCGTGCATCATTCAAAAACT
TCATGTAAAAATGCATTTTGTTGATTTCTTGGAAGACTTTCGTTTGGTTG
CAATCTTCACTGTAATATGCGCTGCGATTATCTGGCATAACTTGAAATTA
CTTGCAAACGTGTTAGGTAACTCACACTATGGGAAAACAAAATACGTTTT
AGTTACTGGCTGTGATTCAGGATTTGGTTTTGCAATTGCTTTGGATTTAG
TGGAATCGAAGTGTAAAGTTTTCGCTGGATGTTTAACTCAAGAGGGTGTT
GACAGATTGGAAAAGAATAAAGATTTCGATGGGTTCGCTTTTTTGATGGA
TGTCACGAAAAATGAAGATGTCGAAAATGCGAGGAAATTCATTGAAGAAA
AAACCGAAAATGATGATTTGAACAATTTGGTAAAGAAAATTAATCTAGTA
CCTGAAGGAACTGCTCAAGTCGTATCAAAAGTCAATCACGCTATCATGTC
ATCTAACCCTCACATAACATACACAGTTGGACCTTATTCGTGGATTTACA
AGATTCTAGCATGTCTGCCAGTTTCATATTATCAATCGTTTGCACATTCC
ATTTTCCCACAGCTCGAACCAATAGTAGATCGATTTGGACGAAGATAAGG
TTTGTACCGAACGCTTTAAACGGATCTTACACAATCTCCAAACATGCCAT
CGAAGCTTTCTCATACTGCTTAATGGAAGAGGTCGTCCATGATGGAATCT
CTGTGCACATAATTTGTCCAACTGGTCAAAAAACTAACATCGTCGTTCCT
GAGATACAACGCAAACAATGGGAGGATGATTTCAATAAACAAAATGATGA
TATCAAACAAAGATATGGCCCAAATTTGACCAAATGACTGTACGCAGTTG
TCAATAATGCTGGAATTGTTAAGCTTGGAAGAATCAGTTGGCAAAGTATG
GAAGATTTAGAAAAAGTTATGGATGTCAATTTTTGGGGGACGGTTCGCAC
AACAAAAGCAATGCTTCCTTTGTTGACTAAAGCTAAAGGGAGAATCGTCA
ATATGTCAAGCTGTTGTGTTTGTTAACGTTGTTTTAGAGATTGTCGCGTG
CATCATTCAAAAACTTCATGTAAAAATGCATTTTGTTGATTTCTTGGAAG
ACTTTCGTTTGGTTGCAATCTTCACTGTAATATGCGCTGCGATTATCTGG
CATAACTTGAAATTACTTGCAAACGTGTTAGGTAACTCACACTATGGGAA
AACAAAATACGTTTTAGTTACTGGCTGTGATTCAGGATTTGGTTTTGCAA
TTGCTTTGGATTTAGTGGAATCGAAGTGTAAAGTTTTCGCTGGATGTTTA
ACTCAAGAGGGTGTTGACAGATTGGAAAAGAATAAAGATTTCGATGGGTT
CGCTTTTTTGATGGATGTCACGAAAAATGAAGATGTCGAAAATGCGAGGA
AATTCATTGAAGAAAAAACCGAAAATGATGATTTGAACAATTTGGTAAAG
AAAATTAATCTAGTACCTGAAGGAACTGCTCAAGTCGTATCAAAAGTCAA
TCACGCTATCATGTCATCTAACCCTCACATAACATACACAGTTGGACCTT
ATTCGTGGATTTACAAGATTCTAGCATGTCTGCCAGTTTCATATTATCAA
TCGTTTGCACATTCCATTTTCCCACAGCTCGAACCAATAGTAGATCGATT
TGGACGAAGATAAGGTTTGTACCGAACGCTTTAAACGGATCTTACACAAT
CTCCAAACATGCCATCGAAGCTTTCTCATACTGCTTAATGGAAGAGGTCG
TCCATGATGGAATCTCTGTGCACATAATTTGTCCAACTGGTCAAAAAACT
AACATCGTCGTTCCTGAGATACAACGCAAACAATGGGAGGATGATTTCAA
TAAACAAAATGATGATATCAAACAAAGATATGGCCCAAATTTGACCAAAT
GACTGTACGCAGTTGTCAATAATGCTGGAATTGTTAAGCTTGGAAGAATC
AGTTGGCAAAGTATGGAAGATTTAGAAAAAGTTATGGATGTCAATTTTTG
GGGGACGGTTCGCACAACAAAAGCAATGCTTCCTTTGTTGACTAAAGCTA
AAGGGAGAATCGTCAATATGTCAAGCTGTTGTGTTTGTTAACGTTGTTTT
AGAGATTGTCGCGTGCATCATTCAAAAACTTCATGTAAAAATGCATTTTG
TTGATTTCTTGGAAGACTTTCGTTTGGTTGCAATCTTCACTGTAATATGC
GCTGCGATTATCTGGCATAACTTGAAATTACTTGCAAACGTGTTAGGTAA
CTCACACTATGGGAAAACAAAATACGTTTTAGTTACTGGCTGTGATTCAG
GATTTGGTTTTGCAATTGCTTTGGATTTAGTGGAATCGAAGTGTAAAGTT
TTCGCTGGATGTTTAACTCAAGAGGGTGTTGACAGATTGGAAAAGAATAA
AGATTTCGATGGGTTCGCTTTTTTGATGGATGTCACGAAAAATGAAGATG
TCGAAAATGCGAGGAAATTCATTGAAGAAAAAACCGAAAATGATGATTTG
AACAATTTGGTAAAGAAAATTAATCTAGTACCTGAAGGAACTGCTCAAGT
CGTATCAAAAGTCAATCACGCTATCATGTCATCTAACCCTCACATAACAT
ACACAGTTGGACCTTATTCGTGGATTTACAAGATTCTAGCATGTCTGCCA
GTTTCATATTATCAATCGTTTGCACATTCCATTTTCCCACAGCTCGAACC
AATAGTAGATCGATTTGGACGAAGATAAGGTTTGTACCGAACGCTTTAAA
CGGATCTTACACAATCTCCAAACATGCCATCGAAGCTTTCTCATACTGCT
TAATGGAAGAGGTCGTCCATGATGGAATCTCTGTGCACATAATTTGTCCA
ACTGGTCAAAAAACTAACATCGTCGTTCCTGAGATACAACGCAAACAATG
GGAGGATGATTTCAATAAACAAAATGATGATATCAAACAAAGATATGGCC
CAAATTTGACCAAATGACTGTACGCAGTTGTCAATAATGCTGGAATTGTT
AAGCTTGGAAGAATCAGTTGGCAAAGTATGGAAGATTTAGAAAAAGTTAT
GGATGTCAATTTTTGGGGGACGGTTCGCACAACAAAAGCAATGCTTCCTT
TGTTGACTAAAGCTAAAGGGAGAATCGTCAATATGTCAAGCTGTTGTGTT
TGTTAACGTTGTTTTAGAGATTGTCGCGTGCATCATTCAAAAACTTCATG
TAAAAATGCATTTTGTTGATTTCTTGGAAGACTTTCGTTTGGTTGCAATC
TTCACTGTAATATGCGCTGCGATTATCTGGCATAACTTGAAATTACTTGC
AAACGTGTTAGGTAACTCACACTATGGGAAAACAAAATACGTTTTAGTTA
CTGGCTGTGATTCAGGATTTGGTTTTGCAATTGCTTTGGATTTAGTGGAA
TCGAAGTGTAAAGTTTTCGCTGGATGTTTAACTCAAGAGGGTGTTGACAG
ATTGGAAAAGAATAAAGATTTCGATGGGTTCGCTTTTTTGATGGATGTCA
CGAAAAATGAAGATGTCGAAAATGCGAGGAAATTCATTGAAGAAAAAACC
GAAAATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001476XLOC_001476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002747-exon-sc0000021-1575043694:1071440..1071852TCONS_00002747-exon-sc0000021-1575043694:1071440..1071852Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1575043694:1070493..1070675TCONS_00002747-exon-sc0000021-1575043694:1070493..1070675Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1575043694:1069472..1069708TCONS_00002747-exon-sc0000021-1575043694:1069472..1069708Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1575043694:1064730..1065508TCONS_00002747-exon-sc0000021-1575043694:1064730..1065508Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1510915933:1071440..1071852TCONS_00002747-exon-sc0000021-1510915933:1071440..1071852Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1510915933:1070493..1070675TCONS_00002747-exon-sc0000021-1510915933:1070493..1070675Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1510915933:1069472..1069708TCONS_00002747-exon-sc0000021-1510915933:1069472..1069708Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1510915933:1064730..1065508TCONS_00002747-exon-sc0000021-1510915933:1064730..1065508Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1491911889:1071440..1071852TCONS_00002747-exon-sc0000021-1491911889:1071440..1071852Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1491911889:1070493..1070675TCONS_00002747-exon-sc0000021-1491911889:1070493..1070675Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1491911889:1069472..1069708TCONS_00002747-exon-sc0000021-1491911889:1069472..1069708Clytia hemisphaericaexon
TCONS_00002747-exon-sc0000021-1491911889:1064730..1065508TCONS_00002747-exon-sc0000021-1491911889:1064730..1065508Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002747-proteinTCONS_00002747-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:1064730..1071852 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.84198	4.54051	1.68092	1.6153	0.517057	0.420497	5.2668	7.37196	11.8527	13.8261	9.33589	11.1593	15.6818	13.4317	29.1527	39.871	2.49635	6.00377	6.86913	7.77256	1.43913	1.70963	5.40364	5.93293	2.57715	2.87692	60.8129	35.095	1.92417	3.76024
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00002747 vs. Swiss-Prot (Human)
Match: DR9C7 (Short-chain dehydrogenase/reductase family 9C member 7 OS=Homo sapiens GN=SDR9C7 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.145e-46
Identity = 104/299 (34.78%), Postives = 162/299 (54.18%), Query Frame = 2 
Query:  155 NVLGNSHYGKTKYVLVTGCDSGFGFAIALDLVESKCKVFAGCLTQEGVDRLEKNKDFDGFAFLMDVTKNEDVENARKFIEEKTENDGLYAVVNNAGI-VKLGRISWQSMEDLEKVMDVNFWGTVRTTKAMLPLLTKAKGRIVNMSSCCGFVPNALNGSYTISKHAIEAFSYCLMEEVVHDGISVHIICPTGQKTNIVVPE----IQRKQWEDDFNKQNDDIKQRYGPNLTKYLNNLVKKINLVPEGTAQ-VVSKVNHAIMSSNPHITYTVG-PYSWIYKILACLPVSYYQSFAHSIFPQ 1030
            N++GN      KYV +TGCDSGFG  +A  LV+   +V A C T+EG  +L+++  +     L+DVTK+E ++ A +++ +K    GL+A+VNNAG+ +  G   W + +D  KV++VN  G +  T  MLP++ +A+GR+VNMSS  G V   + G Y +SK  +EAFS  +  E+ + G+ V II P   +T I+  E      RK WE    +   + +  YG +  +   + +K I  V E   + V++ + HAI+S +P I Y  G     +Y  LA LP            P+
Sbjct:   18 NLVGNLS---EKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSYRLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVINVNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVA-VIGGGYCVSKFGVEAFSDSIRRELYYFGVKVCIIEPGNYRTAILGKENLESRMRKLWE----RLPQETRDSYGEDYFRIYTDKLKNIMQVAEPRVRDVINSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKLPTPVTDFILSRYLPR 308
The following BLAST results are available for this feature:
BLAST of TCONS_00002747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DR9C71.145e-4634.78Short-chain dehydrogenase/reductase family 9C memb... [more]
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