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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002746 ID=TCONS_00002746|Name=TCONS_00002746|organism=Clytia hemisphaerica|type=transcript|length=1524bp
CGTTTGGTTGCAATCTTCACTGTAATATGCGCTGCGATTATCTGGCATAA
CTTGAAATTACTTGCAAACGTGTTAGGTAACTCACACTATGGGAAAACAA
AATACGTTTTAGTTACTGGCTGTGATTCAGGATTTGGTTTTGCAATTGCT
TTGGATTTAGTGGAATCGAAGTGTAAAGTTTTCGCTGGATGTTTAACTCA
AGAGGGTGTTGACAGATTGGAAAAGAATAAAGATTTCGATGGGTTCGCTT
TTTTGATGGATGTCACGAAAAATGAAGATGTCGAAAATGCGAGGAAATTC
ATTGAAGAAAAAACCGAAAATGATGGACTGTACGCAGTTGTCAATAATGC
TGGAATTGTTAAGCTTGGAAGAATCAGTTGGCAAAGTATGGAAGATTTAG
AAAAAGTTATGGATGTCAATTTTTGGGGGACGGTTCGCACAACAAAAGCA
ATGCTTCCTTTGTTGACTAAAGCTAAAGGAAGAATCGTCAATATGTCAAG
CTCCGCTGGTACCTTGCCATTTTCATATGCAGGATGCTACACAATCTCCA
AACATGCCATCGAAGCCTTCTCTTACTGCTTAATGGAAGAGGTTGTCCAT
GATGGAATCTCTGTGCACATAATTCGTCCAACTGGTCAAAAAACTAATAT
CATTAACCCTGAGATACAACGCAAACAATGGGAGGACGATTTCAATAAAC
AAAGCCAGGAAGTCAAACAAAGATATGgtccaaatttgaccaaatATTTG
AACAATTTGGTAAAGAAAATTAATCTAGTACCTGAAGGAACTGCTCAAGT
CGTATCAAAAGTCAATCACGCTATCATGTCATCTAACCCTCACATAACAT
ACACAGTTGGACCTTATTCGTGGATTTACAAGATTCTAGCATGTCTGCCA
GTTTCATATTATCAATCGTTTGCACATTCCATTTTCCCACAGCTCGAACC
AATAGTAGATCGATTTGGACGAAGATAAGTTAATTACATATTAAGGAATT
TTCTCGTACATTATTAGCAGTTTTTAATGGTGTTATTCATATCGCTCCAC
gcatttttttaaaacatctGGTTAAATCACATCAAGaaagttgaaatttc
aaatttgaaatgtgTTGACTCAACAAAAACCATTGATTTTAAAACCTATA
CTACTATGTAGTAGGTTGTTTTAGTAGAAGAAAGCGGGCGGGTATTCGGT
TTATTTTGGAGGCAAAaggcttaagggctctgaccatagtgaatttttca
taattgccgtgtttaaaatgtgttttctgactgatgtaaccaacaaaact
atggcatgttatacattttctgttagacaaactattcctgaatctgaaaa
ttcaaaaattgcattgacaaaatttgatgaagaagaaaatgaagactttt
gtgaggaagagtatttcaactttgaagagcttagtttcggcgaagaaaaa
acattttgaaaaattttttgcagtagatggtgtatcttttaccgaacaat
aaaaatttttgcggaaaatttttg Run BLAST on NCBI transcript from alignment at sc0000021:1064730..1071764- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002746 ID=TCONS_00002746|Name=TCONS_00002746|organism=Clytia hemisphaerica|type=transcript|length=7035bp|location=Sequence derived from alignment at sc0000021:1064730..1071764- (Clytia hemisphaerica)
CGTTTGGTTGCAATCTTCACTGTAATATGCGCTGCGATTATCTGGCATAA
CTTGAAATTACTTGCAAACGTGTTAGGTAACTCACACTATGGGAAAACAA
AATACGTTTTAGTTACTGGCTGTGATTCAGGATTTGGTTTTGCAATTGCT
TTGGATTTAGTGGAATCGAAGTGTAAAGTTTTCGCTGGATGTTTAACTCA
AGAGGGTGTTGACAGATTGGAAAAGAATAAAGATTTCGATGGGTTCGCTT
TTTTGATGGATGTCACGAAAAATGAAGATGTCGAAAATGCGAGGAAATTC
ATTGAAGAAAAAACCGAAAATGATGGTAAAATGTTTATTATTTTACAACC
ATTAAGGACAACCTAATATCACTAAGCTAAGAAACCTTCAATTTATAAGT
TAAATGGCCTACTCTTAGGTGCCAAATAAACGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNACTGGTCACACTTTCTTAGAGAAAGCGCAACTTTCGAAATTTGGTTTT
TATTTTAGTAAGTGAGGACAGCGCTAAATTCGAATTTCCCACTGTAAAAA
ATGTGAGTTCAATATTGGACTCACAGCTCGAACCCGTCTCAAATTATAAA
AAAACACACGACGGATCTCCTGTCTAGGGGGGTTGGAAATTGTACTTCTG
AAAACCCAAAAATAAGGTAAATATAGGTCAAAATCAGGCTATTTAGAGCA
AAATAAGGGGCCTTCTCTTTGACAGCTGAAAATATTTTAAAAAAATAATT
AACGGCATTCAAGTAAACAAGCATTTGTTTTATTTCTAGGACTGTACGCA
GTTGTCAATAATGCTGGAATTGTTAAGCTTGGAAGAATCAGTTGGCAAAG
TATGGAAGATTTAGAAAAAGTTATGGATGTCAATTTTTGGGGGACGGTTC
GCACAACAAAAGCAATGCTTCCTTTGTTGACTAAAGCTAAAGGGAGAATC
GTCAATATGTCAAGCTGTTGTGGTATGTATAGTATGAGGCGAAATGTGAC
TCAGACGAAATGTTTCGAAATTCAAATACACTCAGGTCCACTGTAAAATA
CCTACAGGCCCACAGTAAAATATCAATAGACCTTATCGGACTTTTTGATT
TTTCTAAAAAAGCGATGCATTGTGGGATTGTATCGAGTGTATTAGAATAG
AAATCTCTTAGGAATTCCTCGAGGGAATTCTATTGTAATACACTCGAAAC
AATCCCACAATGCATCGCTTTTTTATAAAAATCAAAAACTCCGATAAGGT
CTATTGATATTTTATAAGAAAATACCTCCAAAATTGAAATATTAATGGTC
TATTGGTCATGGTTTTATAATTGTTTTTCTTTAAAAAGGGGCTGGATCTA
GTGGTACGGATTTGCTAGGAACTCAAACAAAGCCTGTCAAATTACACCGG
GCCACTTATCAGCGCCACCCAGTCTATCAAAAAAAGCTATAAATGGCCCC
CGGGCTATGACAGACTTCGATAGACTTGAGGTTGATAGACTGTTGATGCA
TACACTTTTTTCTTTGTACTGCAAGTAACCAGGTTTAGCATTGAAATTAG
CCAATTCTTTTTACCGGTACTATCTCTAAAAGTAAAAGCTTTATACAAAA
TCTGACTATGACAAACGGTAGCCCCTGACCCAATAAGCATAAATATGATT
ATAATATAAGGGATGCCTCAGAAATTGAGCTAGAATGCTAAGTAGCCTAA
GCCCTTAGTCGAAAATTGGCGTTGCTTATGAACAAAATTTCTGTATTTTA
TCATAGGGTTTGTACCGAACGCTTTAAACGGATCTTACACAATCTCCAAA
CATGCCATCGAAGCTTTCTCATACTGCTTAATGGAAGAGGTCGTCCATGA
TGGAATCTCTGTGCACATAATTTGTCCAACTGGTCAAAAAACTAACATCG
TCGTTCCTGAGATACAACGCAAACAATGGGAGGATGATTTCAATAAACAA
AATGATGATATCAAACAAAGATATGGCCCAAATTTGACCAAATGTAAGTT
TTGTTTTTATTTTATCTCTGAAAAGCAGGTATGAAAATTGTAAAGTAACA
TTGTGAAATATTTTGATCGATGTATATTTGCATGCCAAGAAGTGTAAGGC
TTCAGTGTCATAAACCAGTGATTCGCGGCTCAAATCCCCACGGTTTTCAT
GTTCAGTTCTTAAATAGCCAAGCAAGCTGGCTGTGGAATACGTCAAAACA
ATTGTCTGAAACAACTGTCTAAAAGTCCTAGATCACTCTGGGCCATCCAA
GTGAAATATCGACCCTATCTTACCAATATCTTTAAATGAATGGAATCTTT
ATTTATTTTTTATAGTTTTGAACGACGCATTTGCTCGGCAAGCTAAAGTA
CCCGAAGGAACTGCTCAAGTCGTATCGAAAGTCAATCACGCTATCATGTC
ATCTAACCCTCACATCAAATACGTCGTTGGACCTTTATCGTGGACCTACC
AAATTCTAGCATGTTTACCTGTCTCTTATTTTCAATCGGCTGCACATTCT
ATTTTCCCTCAGCTTAAACCCGTGATCGATCGGTTTGGACAAAGATAAAT
TCTACTACTAAATTCTATATTGAAGTATTCACAATACACGGCTGAGAAGC
TTTCAACCTCACTGAACTTCAATCTCAAATGCCATATTATTTAAATCTTT
TTTTGTGGATTTAGGGTACAGATTTATAAAACCCGAAAAGATAGATATCG
TGCTTTAAGCCATTGCAGGCAAAAAAATATTGGAAAAATATTGTTGCTAT
TTTGTTTTTGCTTTTCGAAAACCCGTGAAGCTTCTGATTGGTCAAGTGCT
GAAATTCTATTGTAATGTCACGTGACCTAGGTAGGATTTCATACCTAACC
ACGGCACATCTTCGGGCTTTAGAAATCTGTGGTTTAGGGTACATCCGTCC
GTGTGAATTTTTAGATACATATAGACATTTTAGTAATGAAATTTTAATTT
CCAATTAAGACGGCGAAAGAAAAAGAAAAGTTAAAAGAGTGTACGATATT
AAATTAAATTTAATTTTTAATTTCTTTAAAGACCAAAGGTCGATCGGTAA
AGAAATGCTTGTGTATTCATGATATGCACTGTTGCAATGTCTTCCACCGA
CCGAACAGCTGATTGGTTGAAAGTGATGTTTGACTGATTAAACGTAACTT
ACNCCGTTGCAATGTCTTCCACCGACCGAACAGCTGATTGGTTGAAAGTG
ATGTTTGACTGATTAAACGTCACTTATAACCAATCAGATGTTGGGTCCGT
GATGTAATGTCAGAAGACATATTGGAATGGTGCATATCATGAACTTCCAG
AAAATGATCATTCTGTTGCGTGGACAACACCCCACAGCCTTTAGGGTAAC
CACCTAACAAATTGAAATTACCTTTTGAGTCTTGGATTTTGACTTTGTAA
AGGGGCAATAGGAAAAGTTTTTCCGGGAATGTGAAAGTTTACCCATTATA
CGGTACATGGTAAAATCCTTATGCTTATTTCATCAAAATCAATTTATTGG
GAAATATTTCAAATATTTGCCTTTTTCTCTGAACAAATTTTTAAAAAATT
TGTGAAATTTCACTAAAAACTTAGCTCGGGGTGAATCATAAGCATGATTC
ATAAGCATATAATAAGCATAAGCTACGCCTGGATGCTTTGAGAACTTAAG
CATACACGAGCTTGACCAAGGGGCAGACACTTGCTTATAAAAAAAACCAA
AAACAAATATAATGAGATTAATTTTTTCAAAATTGATTACGTCCAGAAAA
CGGTTATTATTAGCCACAGTTAAATAAAAATGGTATTTCTCTTTCACTCT
AAGTGAACGTGTATGGATAAATTATTGTAACAAAAATGCATTTTGTTGAT
TTCTTGGAAGACTTTCGTTTAGTTGCAATTTTCACTGTAATATGCGCTGC
GATTATCTGGCATAACTTGAAATTACTTGCAAACGTGTTAGGTAACTCAC
ACTATGGGAAAACAAAATATGTTTTAGTTACTGGCTGTGATTCAGGATTT
GGTCTTGCAATTGCTTTGGATTTAGTGGAATCGAAGTGTAAAGTTTTCGC
TGGATGTTTAACTCAAGAGGGTGTTGACAGATTGGAAAAGAATAAAGATT
TCGATGGGTTCGCTTTTTTGATGGATGTCACGAAAAATGAAGATGTCGAA
AATGCGAGGAAATTCATTGAAGAAAAAACCGAAAATGATGGTAAAATGTT
TATTATTTTACAACCATTAAGGACAACCTAATATCACTAAGCTAAGAAAC
CTTCAATTTATAAGTTAAATGGCCTACTCTTAGGTGCCAAATAAACGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAACGGCATTCAAGTAAACAAGCATTTG
TTTTATTTCTAGGACTGTACGCAGTTGTCAATAATGCTGGAATTGTTAAG
CTTGGAAGAATCAGTTGGCAAAGTATGGAAGATTTAGAAAAAGTTATGGA
TGTCAATTTTTGGGGGACGGTTCGCACAACAAAAGCAATGCTTCCTTTGT
TGACTAAAGCTAAAGGAAGAATCGTCAATATGTCAAGCTCCGCTGGTATG
GACTATTGTTTAACTTCAAATGAACGTCTGGTGATTTTTCTAAGCACTTT
CAGATGGGGCCGTCTTTGTAAACTTAGATCGAGCTTCTAATATGCCTGAA
AGGGAATTGTCTCAGCAAAGCTGTATATTGATGAAGCTGGCATGGGGGTT
TGGTTTGTGTTCAGAAGGCGAAGCTCCCAAAAATATTTGGAATATTATAG
AAATTTTTGTTTGTAAACAACAAACAGGTTTAATGTTGATTAGAGGGTAA
TTATACCACATTAATATTCAGAAATGTTAGCGTAATCTACTATTTGTGGG
GTCTTCATTCCACATCTTTTTTACTGAGAGGGATCCCTTTGTTCCTTCCT
TAAGAGATTTTAGCTTTATTGACAAACGGAGCCCCTCCCTTCTCCCCGAT
GGGCAAAGAATTTTTGCACCGTTTTCAGATTTTATCAAAACGATGCTCTC
CANTCTGTTGACAATCGGAGCCTCTCCCTTCTCCCCGCGGCTCAAAGAAT
ATCTGCACCGTTTCCAGATTTTGCCAAAGCGATGCTCTCTCTTTTGTTCT
AGGTACCTTGCCATTTTCATATGCAGGATGCTACACAATCTCCAAACATG
CCATCGAAGCCTTCTCTTACTGCTTAATGGAAGAGGTTGTCCATGATGGA
ATCTCTGTGCACATAATTCGTCCAACTGGTCAAAAAACTAATATCATTAA
CCCTGAGATACAACGCAAACAATGGGAGGACGATTTCAATAAACAAAGCC
AGGAAGTCAAACAAAGATATGGTCCAAATTTGACCAAATGTAATTTGCTT
TTTTTGTATTATGCATCATTTGGGACGGCTTTTATTTTTACCAAAGTGTA
AAAGGTTTTAAGCATTCGAAAAAAATCGCATTCCACTATTTTGAATCTTT
GAAAGCATTTTCTTGAATTTTTCGAGTTTAAAATTAAATCCCTATCGACG
TTCCGAACTTACGAACACCGGACACGTCAACTCCTGTGTCGGATGCAGAT
ACTTTTTAACACCAGACAATCACAACTCGAGTCCGGTGCGTCTGGTGTGA
ATTATTTTTGAAACATACGTGTCAGGTGTCAAGAAGTTCGAAAAATTAAC
ACCGGACAAAAGGTTTCCGATGTGGCTGAGGGACTGTCCGGTGCGTCAAC
AGGGTCGTCCTGAATGATGCTCAGCAACTCCTCGTCCGTCTATTATTTCT
TCATAGATTTGAACAATTTGGTAAAGAAAATTAATCTAGTACCTGAAGGA
ACTGCTCAAGTCGTATCAAAAGTCAATCACGCTATCATGTCATCTAACCC
TCACATAACATACACAGTTGGACCTTATTCGTGGATTTACAAGATTCTAG
CATGTCTGCCAGTTTCATATTATCAATCGTTTGCACATTCCATTTTCCCA
CAGCTCGAACCAATAGTAGATCGATTTGGACGAAGATAAGTTAATTACAT
ATTAAGGAATTTTCTCGTACATTATTAGCAGTTTTTAATGGTGTTATTCA
TATCGCTCCACGCATTTTTTTAAAACATCTGGTTAAATCACATCAAGAAA
GTTGAAATTTCAAATTTGAAATGTGTTGACTCAACAAAAACCATTGATTT
TAAAACCTATACTACTATGTAGTAGGTTGTTTTAGTAGAAGAAAGCGGGC
GGGTATTCGGTTTATTTTGGAGGCAAAAGGCTTAAGGGCTCTGACCATAG
TGAATTTTTCATAATTGCCGTGTTTAAAATGTGTTTTCTGACTGATGTAA
CCAACAAAACTATGGCATGTTATACATTTTCTGTTAGACAAACTATTCCT
GAATCTGAAAATTCAAAAATTGCATTGACAAAATTTGATGAAGAAGAAAA
TGAAGACTTTTGTGAGGAAGAGTATTTCAACTTTGAAGAGCTTAGTTTCG
GCGAAGAAAAAACATTTTGAAAAATTTTTTGCAGTAGATGGTGTATCTTT
TACCGAACAATAAAAATTTTTGCGGAAAATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00002746-exon-sc0000021-1575043694:1071440..1071764 | TCONS_00002746-exon-sc0000021-1575043694:1071440..1071764 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1575043694:1066720..1066902 | TCONS_00002746-exon-sc0000021-1575043694:1066720..1066902 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1575043694:1065926..1066162 | TCONS_00002746-exon-sc0000021-1575043694:1065926..1066162 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1575043694:1064730..1065508 | TCONS_00002746-exon-sc0000021-1575043694:1064730..1065508 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1510915933:1071440..1071764 | TCONS_00002746-exon-sc0000021-1510915933:1071440..1071764 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1510915933:1066720..1066902 | TCONS_00002746-exon-sc0000021-1510915933:1066720..1066902 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1510915933:1065926..1066162 | TCONS_00002746-exon-sc0000021-1510915933:1065926..1066162 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1510915933:1064730..1065508 | TCONS_00002746-exon-sc0000021-1510915933:1064730..1065508 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1491911889:1071440..1071764 | TCONS_00002746-exon-sc0000021-1491911889:1071440..1071764 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1491911889:1066720..1066902 | TCONS_00002746-exon-sc0000021-1491911889:1066720..1066902 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1491911889:1065926..1066162 | TCONS_00002746-exon-sc0000021-1491911889:1065926..1066162 | Clytia hemisphaerica | exon |
| TCONS_00002746-exon-sc0000021-1491911889:1064730..1065508 | TCONS_00002746-exon-sc0000021-1491911889:1064730..1065508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:1064730..1071764 - |
Blast
BLAST of TCONS_00002746 vs. Swiss-Prot (Human)
Match: DR9C7 (Short-chain dehydrogenase/reductase family 9C member 7 OS=Homo sapiens GN=SDR9C7 PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 3.466e-49 Identity = 106/299 (35.45%), Postives = 163/299 (54.52%), Query Frame = 1
Query: 67 NVLGNSHYGKTKYVLVTGCDSGFGFAIALDLVESKCKVFAGCLTQEGVDRLEKNKDFDGFAFLMDVTKNEDVENARKFIEEKTENDGLYAVVNNAGI-VKLGRISWQSMEDLEKVMDVNFWGTVRTTKAMLPLLTKAKGRIVNMSSSAGTLPFSYAGCYTISKHAIEAFSYCLMEEVVHDGISVHIIRPTGQKTNIINPE----IQRKQWEDDFNKQSQEVKQRYGPNLTKYLNNLVKKINLVPEGTAQ-VVSKVNHAIMSSNPHITYTVG-PYSWIYKILACLPVSYYQSFAHSIFPQ 942
N++GN KYV +TGCDSGFG +A LV+ +V A C T+EG +L+++ + L+DVTK+E ++ A +++ +K GL+A+VNNAG+ + G W + +D KV++VN G + T MLP++ +A+GR+VNMSSS G + G Y +SK +EAFS + E+ + G+ V II P +T I+ E RK WE + QE + YG + + + +K I V E + V++ + HAI+S +P I Y G +Y LA LP P+
Sbjct: 18 NLVGNLS---EKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSYRLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVINVNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAV-IGGGYCVSKFGVEAFSDSIRRELYYFGVKVCIIEPGNYRTAILGKENLESRMRKLWE----RLPQETRDSYGEDYFRIYTDKLKNIMQVAEPRVRDVINSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKLPTPVTDFILSRYLPR 308
The following BLAST results are available for this feature:
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