TCONS_00002737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002737
Unique NameTCONS_00002737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002737 ID=TCONS_00002737|Name=TCONS_00002737|organism=Clytia hemisphaerica|type=transcript|length=2702bp
TCTCAGCTTTCATAAATATCAATTTTactaagcagatattcaatagCTGA
GATGCAATCAGTTGAAGATTTGGCGTTTGGTCTTGATCGAACCAAAGATA
TGAACATTGTCTTGATCGGACGAAGCGGCGTTGGCAAATCAAGCTGgatc
aattcttttttcaattatCTTCTACATCCATCGTTTGATTCAGCAGTGAG
AGAGGGTCCAGTCTATGCACCAGTTTATTCTAGGTTTAAACATTATCACG
AAGAGGCTGATGACGTGGTCAATACAGAGGacgatgatgacgatgatgat
gatggttTCGGTTGTTTGGTCGATATCGAAATCGGTGACAAACATCAAGA
GAATGTTAACCAAGAATATCGAGAAGGAAACACTGGTGTATCAGCAACAA
TGCTTCCGATGGCTCATCGATTAGAGCCTAAGGATGAAAAGTACAGTATT
ACTTTGATTGATACGCCTGGCTTCTGTTCTACCGCCCCTGGTGGCGATAC
CACCCTTTCAGAAGCtcaagataaaaagaatatCAATCTCATTCTTAACC
AACTTGGTCAATACCCTCACATTAATGCATTTGTCATCCTATTGAAACCA
GGACAAGAGAAGCTTGATCCAGGATTTGCTACATCTCTTAAGACTCTATT
CAGCCAACTTGACGAATCAGCAAAAAGCAATGTCATCTTTTCATTTACTC
ACTCGAACAATTGCGACTTCAATGACATCCAACACCTTCCAGCACTGAAA
AACTTCTTAAAGAGCAAGGCGAATCTTCGAATTAAACGTAGTAATGTGTT
CTATTTCGATAACTCACCCTTCTGCTATCTTGCAACTGCCGCCAATAACT
ACCAACCAACCGACAGCCGAAGCAAAATGCAAGACTGCTGGGACAAATCC
GTTAAAAACTGTCTTAATATGCTTGGCCATATCAACCAATTACCAGCTCA
CAAAACCGACACTATAATAGCCATTAACGACAGTAAATCCATCATCAAAA
TGATGATTGCACCTCTCGTTTACGTCTGCAAAATCAATGAAGAAAATTAC
GCCCTCGTCAACCAAACCTATGATAATCTGGCTAAGCAGACAGGAAGGAG
TGTCATCAAAGTCAAAGACGATCCTAAGAAGGACCAAGGAGGAGCTGATG
AAGAAATAAAAGATGAAAATGCTAATTTGAATCTTGAAGGAGCAAAAGCT
ATAGAGGAGGAAGAGGAGCCTCTTACTCAAGAAACAAATATAGATGAAGC
AGACAGAGAAGAGAATGGTGAAGGAGCGGAGGACCAAGAAGTAGAGGGTC
GAAAAGAAGGTTGTGGAGGAGCACTTGATGGTATTGATCTTATTGAAATC
AACGAGAAGGTTCTAATCTACAAGAAGCTAAGAACGCCGATCACAGTGTG
CAACAATCCAGCTTGCTTTAAGAAGCAAAGTATCTTCGAGGAGGGGAAAG
AAATTGTCAAGAAGATGTACCACAACGTGTGCTGCCATAATTGTCTGGTC
CCCTTTGTTTCACACGACAAGCCTGGCTCGTTGATGTTGCTTCTATGCAA
GGCTTTTGACTGGTCACTGAAATGTCGAATATGTGATCATTCTAAGGATG
AACATATACACATTGCTTACGAGTTGAACGAAGCTCATAAAGTCTTTGCA
TTGGAGATCAAGGATATCAATCAACGAAAGAAAGATCTTGAGCTTGAATT
TGAAGTCATCATCGATATCCTTGTATTCTTTGCACAGTTCTTGAACCATC
ATTGTCTGTTGAAAGAGGAAATGCTGGTCAAGCAATGCATTGATAGAGAA
CTGGTGAAAGTCAGTCAAGATCTTGGTGATTTGGTACGCCTCCAAGATGA
GCGCCAAGAGAAAGTTAAAGAGCTTTCCGAGAATGACCTAGTCAAATTGC
AAGGCATCATCAAgcaaaacaaagacaaactAAAAGCCATAGACGAAAAG
GTATCATTGGTTACGAAGATGGGAAAACTTAAAGTTGAAACGTTGGGGGA
GATTGATGAATTCGAGAAGACTGCCATGGTAAGTGAGCTGCATGATCTGG
CATCTAAACGAAAATGTTTGCTCAGTTCCAGTGAGAAGAGTCTCGATCAG
GAGGAGCTTTGTCAGGTTTACGACAAACGTCGAAGCAAATACGTTAGTCT
ATTGCAAAAGCTTAGAGAAGATGAAAATCTTCTGTTACAGTTGATTGAAT
TAAACGAAAGCTGTGACAAGATGAAAATGTTAGCTAAAGGTTTGAAAAAG
ATACAACAAAAATATGCTGATAGAATGCAGAATCAAAAGCACAGTTTGGT
ACCCGAAAGCGTTAATGCCAAAATAATAATGCTGACAAAGTTACCACATA
ATGGCCATATCTTTAAGGAAATTcatgaagaattgaaaaagtcTAAGACC
GAAGGACTCATCCAAGACAAAGTGTATAAGATGGGGGAGCAGTTGTCAAA
TTTACCCCGACGCGCATATCAAAAGATCAAGAAAGCTGCAGAAAATGTAT
ACCATTCATTACAGAGATAAAACGAAACTAAGTGTGATTTTCAACAGATT
GATGAAACGTTAGAAACACAGATTTTTTCCCCGAACTTTCTATTCTTGTA
TCTTGTAAAGGAACACCtagttttttatattaaaaCTTTCTTGAATTTAG
AACCTTTTTTGAAGACGAAAAGGATAAGGAAAGAGATACGGCTATAGTTT
TT
Run BLAST on NCBI

transcript from alignment at sc0000021:878515..884033-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002737 ID=TCONS_00002737|Name=TCONS_00002737|organism=Clytia hemisphaerica|type=transcript|length=5519bp|location=Sequence derived from alignment at sc0000021:878515..884033- (Clytia hemisphaerica)
TCTCAGCTTTCATAAATATCAATTTTACTAAGCAGATATTCAATAGGTAA
AAGTTACGTTGGTTATTGAGATCTATTAACCCGAGGTGATGTAATATACA
TCACCGAGGGTTAATAAAACCAATAACCAACTAAAACTTATTGAATATAT
GTTTTATTATATACCTTAAGCCAAAAACAAAACACGAGTTATGTAAATAG
TCGAACGATTCGCATAAAACACTCCCGTAATCGAAAGTTCGAATGTTTTT
CTTATTTATTGATTTTCTTAAATTACTGTGAGTCATAAGATTTGTTCATG
AAATTAACAATAGATTTATTTTAATGAATTTCTTTGATAACAACAAGAGC
GACAAAAAAATCAAACTTTGAAAGCAAGATTTAAAAAAAAATTCCACCGT
GGTATAATAGCCATGGTATATCAGGAATTATTCAATGGCTGTTTTTGCCT
ACAGGTATATAATAATATTATTTATTTCAGCTGAGATGCAATCAGTTGAA
GATTTGGCGTTTGGTCTTGATCGAACCAAAGATATGAACATTGTCTTGAT
CGGACGAAGCGGCGTTGGCAAATCAAGCTGGATCAATTCTTTTTTCAATT
ATCTTCTACATCCATCGTTTGATTCAGCAGTGAGAGAGGGTCCAGTCTAT
GCACCAGTTTATTCTAGGTTGGTTAATACTATTTTCATAACAATTTTATA
AGAGCAAGGGGGAGGGCAAAATATTCCTGAAATAAGAATAGTTTAAGAAT
ATCCCTGAGATTGCAATGGTTGAATTTTAATAAAGTGAAGTGTCGAATAG
TGAAAATTGGCACTAGAAGGTAGAGAAAGTACTTCAACATCATTAAAACA
AATTAATAGTCCATTTTCAACTACAATCCATAGATTCTTTTTTCAAGTAC
ATTTGAGAACTTCTCAGGATTGTCATATACGATCTTAAATTTCATATTAA
GAAATCTTCAATCTTAGAGGGTTATCACTGTGAAAAATGTTCAAAAGATA
TTTATTCAATCAAAAAATATAAAATATCTTAAATCTACTGCCTGGTGGAC
TAAAAATTTGGCTCCTTTTTGTTGTTTTGTGGTGATTTTTAAAGTCAATT
AGTGATATACTTGGGATATCTTTTGAAATAATATATTTGAACAATTTCTT
CAGCAGAGATGACATTCTAAGATCAAAGAACCACTGTTATGAAAATGGAA
ATTACAGGAGAGTTATTCACGAAGTTAATTTTTTTCTTCTCCATTTTTTA
TTTTCATTTTACAAACTTTTTAAGCTTTTTCTATTGGTAATATTCCACTC
TTGAATATCTTTTCAACAAGCACAAAACCACTATTCATTTCAAATTCTCT
AAAAAATCACAGCTTTTTTTGTCTCCGGTGTATATTATATTGAGACAGAT
ATTACAACGGCAGGTTTTTTGGCATGAAAACTTTTACCTGGCCTAATTCG
CGAGTCCCCTCTCCAATAAGTTACAAAATGCTATCTACTTTCGAACTAAT
CACACGCGCTTACGTCCCACTTAAGATACTACGGAACCTAAATGTTTTCC
CACTTAGTATTATGTAGAACAGAATATATAAAAATAAGGCGTCGGTGACC
AAAATACAAAGAACACGTTCAGAACATTTTAAGGCTTTGAGGCTTAAAAT
TTGGACAAAAATCGAGTGAAAATCGACAAACATTGTGACATACCCGTCAC
CTCGCAAATCTAGTACCCCCGGACTAGAGCTTGATAATAGTGCCAAGTTT
TAAATTTTGTTCTAGGTTTAAACATTATCACGAAGAGGCTGATGACGTGG
TCAATACAGAGGACGATGATGACGATGATGATGATGGTTTCGGTTGTTTG
GTCGATATCGAAATCGGTGACAAACATCAAGAGAATGTTAACCAAGAATA
TCGAGAAGGAAACACTGGTGTATCAGCAACAATGCTTCCGATGGCTCATC
GATTAGAGCCTAAGGATGAAAAGTACAGTATTACTTTGATTGATACGCCT
GGCTTCTGTTCTACCGCCCCTGGTGGCGATACCACCCTTTCAGAAGCTCA
AGATAAAAAGAATATCAATCTCATTCTTAACCAACTTGGTCAATACCCTC
ACATTAATGCATTTATCATCCTATTGAGNTATCAATCTTATTCTAAATCA
ACTTGGTCAATACCCTCACATTAATGCATTTGTCATCCTATTGAAACCAG
GACAAGAGAAGCTTGATCCAGGATTTGCTACATCTCTTAAGACTCTATTC
AGCCAACTTGACGAATCAGCAAAAAGCAATGTCATCTTTTCATTTACTCA
CTCGAACAATTGCGACTTCAATGACATCCAACACCTTCCAGCACTGAAAA
ACTTCTTAAAGAGCAAGGTNAAATCGGTGACAAACATCAAGAGAATATTA
ACCAAGAATATCGAGAAGGAAACACTGGTGTATCAGCAACAATGTTTCCA
ATGGCTCATCGATTAGAGCCTAAGGATGAAAAGTACAGTATCACTTTGAT
TGATACGCCTGGCTTCTGTTCTACCGCCCCTGGTGGCGACACCACCCTCT
CAGAAGCTCAAGATAAACAGAATATCAATCTTATTCTAAATCAACTTGGT
CAATACCCTCACATTAATGCATTTGTCATCCTATTGAAACCAGGACAAGA
GAAGCTTGATCCAGGATTTGCTACATCTCTTAAGACTCTATTCAGCCAAC
TTGACGAATCAGCAAAAAGCAATGTCATCTTTTCATTTACTCACTCGAAA
AATTGCGACTTCAATGACATCCAACACCTTCCAGCACTGAAAAACTTATT
AAAGAGCAAGGCGAATCTTCGAATTAAACGTAGTAATGTGTTCTATTTCG
ATAACTCACCCTTCTGCTATCTTGCAACTGCCGCCAATAACTACCAACCA
ACCGACAGCCGAAGCAAAATGCAAGACTGCTGGGACAAATCCGTTAAAAA
CTGTCTTAATATGCTTGGCCATATCAACCAATTACCAGCTCACAAAACCG
ACACTATAATAGCCATTAACGACAGTAAATCCATCATCAAAATGATGATT
GCACCTCTCGTTTACGTCTGCAAAATCAATGAAGAAAATTACGCCCTCGT
CAACCAAACCTATGATAATCTGGCTAAGCAGACAGGAAGGAGTGTCATCA
AAGTCAAAGACGATCCTAAGAAGGACCAAGGAGGAGCTGATGAAGAAATA
AAAGATGAAAATGCTAATTTGAATCTTGAAGGAGCAAAAGCTATAGAGGA
GGAAGAGGAGCCTCTTACTCAAGAAACAAATATAGATGAAGCAGACAGAG
AAGAGAATGGTGAAGGAGCGGAGGACCAAGAAGTAGAGGGTCGAAAAGAA
GGTTGTGGAGGAGCACTTGATGGTATTGATCTTATTGAAATCAACGAGAA
GGTTCTAATCTACAAGAAGCTAAGAACGCCGATCACAGTGTGCAACAATC
CAGCTTGCTTTAAGAAGCAAAGTATCTTCGAGGTAACCTTTCGCTCATAA
CTCTCTAAAATATGTCCATTGAGAGTCCATAATAACCGATTTTGTCTACT
CAACAAAAAGCGAACGATAGTTTTTAAATCATATTTATCAATTAGTTGCT
TTAAATCTAAAGTAAGTAAGTCTGCGACCGCAGTCGCAGCCCAAAGGCTC
CTCTTTCGATAGCTATCTACCCGAAGGAAGGGGAGGGCGCCACTCTTTTT
CCCTGGATTTCTCTACACACCCTTGATCCCAAGCAGAGGGGCATCAAGTA
CCATTTTGAGAATCTTTGGTATGACCCAGCTGGGGGTTGAACCCACAACC
TTGAGAACCGTAGCCGGATGATCTACCCACTGCACTACGGTCGCAATAAG
AACGTGGTTTCTCTTAAATTTTTAATCTGCCTGCTTGACAGTGTTTCAAA
AAAGGTGCAGCCCCTTGAGTTTAAAGCGCAAAAGGCTAAAGAGGAATCTT
CAACCTTTCTCAAGCAATAAAAAATGATGCCTTACAAACTGTAAGGGTTT
TCGTTCATTGGTTCAAGAGATTGAACAATATTTTCGAAATCTAGCGATGG
ATTTTACTTTAAATTTGGCGTATGTAAGAAAACAACGCGGGTTACGTGAT
TCAAATGGGAAATAAATGGCTTTATTTCCAATCCAAGAAATTCAATTCTA
AACCCTTCGGCGATTTAAACTCAATGGTATGGGCCTACTCCGCCTGATTG
ACACGTCACTGGTTGACGCATTGCTTTCGGGTATTATAACTTGTTTATCC
CTTTTAGGAGGGGAAAGAAATTGTCAAGAAGATGTACCACAACGTGTGCT
GCCATAATTGTCTGGTCCCCTTTGTTTCACACGACAAGCCTGGCTCGTTG
ATGTTGCTTCTATGCAAGGCTTTTGACTGGTCACTGAAATGTCGAATATG
TGATCATTCTAAGGATGAACATATACACATTGCTTACGAGTTGAACGAAG
CTCATAAAGTCTTTGCATTGGAGATCAAGGATATCAATCAACGAAAGAAA
GATCTTGAGCTTGAATTTGAAGTCATCATCGATATCCTTGTATTCTTTGC
ACAGTTCTTGAACCATCATTGTCTGTTGAAAGAGGAAATGCTGGTCAAGC
AATGCATTGATAGAGAACTGGTGAAAGTCAGTCAAGATCTTGGTGATTTG
GTACGCCTCCAAGATGAGCGCCAAGAGAAAGTTAAAGAGCTTTCCGAGAA
TGACCTAGTCAAATTGCAAGGCATCATCAAGCAAAACAAAGACAAACTAA
AAGCCATAGACGAAAAGGTATCATTGGTTACGAAGATGGGAAAACTTAAA
GTTGAAACGTTGGGGGAGATTGATGAATTCGAGAAGACTGCCATGGTAAG
TGAGCTGCATGATCTGGCATCTAAACGAAAATGTTTGCTCAGTTCCAGTG
AGAAGAGTCTCGATCAGGAGGAGCTTTGTCAGGTTTACGACAAACGTCGA
AGCAAATACGTTAGTCTATTGCAAAAGCTTAGAGAAGATGAAAATCTTCT
GTTACAGTTGATTGAATTAAACGAAAGCTGTGACAAGATGAAAATGTTAG
CTAAAGGTTTGAAAAAGATACAACAAAAATATGCTGATAGAATGCAGAAT
CAAAAGCACAGTTTGGTACCCGAAAGCGTTAATGCCAAAATAATAATGCT
GACAAAGTTACCACATAATGGCCATATCTTTAAGGAAATTCATGAAGAAT
TGAAAAAGTCTAAGACCGAAGGACTCATCCAAGACAAAGTGTATAAGATG
GGGGAGCAGTTGTCAAATTTACCCCGACGCGCATATCAAAAGATCAAGAA
AGCTGCAGAAAATGTATACCATTCATTACAGAGATAAAACGAAACTAAGT
GTGATTTTCAACAGATTGATGAAACGTTAGAAACACAGATTTTTTCCCCG
AACTTTCTATTCTTGTATCTTGTAAAGGAACACCTAGTTTTTTATATTAA
AACTTTCTTGAATTTAGAACCTTTTTTGAAGACGAAAAGGATAAGGAAAG
AGATACGGCTATAGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001471XLOC_001471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002737-exon-sc0000021-1575043694:883988..884033TCONS_00002737-exon-sc0000021-1575043694:883988..884033Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1575043694:883367..883553TCONS_00002737-exon-sc0000021-1575043694:883367..883553Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1575043694:881932..882268TCONS_00002737-exon-sc0000021-1575043694:881932..882268Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1575043694:881667..881864TCONS_00002737-exon-sc0000021-1575043694:881667..881864Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1575043694:880552..881223TCONS_00002737-exon-sc0000021-1575043694:880552..881223Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1575043694:878515..879776TCONS_00002737-exon-sc0000021-1575043694:878515..879776Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1510915933:883988..884033TCONS_00002737-exon-sc0000021-1510915933:883988..884033Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1510915933:883367..883553TCONS_00002737-exon-sc0000021-1510915933:883367..883553Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1510915933:881932..882268TCONS_00002737-exon-sc0000021-1510915933:881932..882268Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1510915933:881667..881864TCONS_00002737-exon-sc0000021-1510915933:881667..881864Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1510915933:880552..881223TCONS_00002737-exon-sc0000021-1510915933:880552..881223Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1510915933:878515..879776TCONS_00002737-exon-sc0000021-1510915933:878515..879776Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1491911889:883988..884033TCONS_00002737-exon-sc0000021-1491911889:883988..884033Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1491911889:883367..883553TCONS_00002737-exon-sc0000021-1491911889:883367..883553Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1491911889:881932..882268TCONS_00002737-exon-sc0000021-1491911889:881932..882268Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1491911889:881667..881864TCONS_00002737-exon-sc0000021-1491911889:881667..881864Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1491911889:880552..881223TCONS_00002737-exon-sc0000021-1491911889:880552..881223Clytia hemisphaericaexon
TCONS_00002737-exon-sc0000021-1491911889:878515..879776TCONS_00002737-exon-sc0000021-1491911889:878515..879776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:878515..884033 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0193963	0	0.047049	0	0.0425289	0.0558962	0.112077	0.135138	0.127289	0.142739	0.412772	0.234614	0.79562	0.875196	0.155526	0.347154	0.414572	1.11934	0	0	0.0222589	0.0177529	0.0152791	0	0.767361	1.44896	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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