TCONS_00002704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002704
Unique NameTCONS_00002704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002704 ID=TCONS_00002704|Name=TCONS_00002704|organism=Clytia hemisphaerica|type=transcript|length=585bp
ATGTAGAATATGACAAGCAAACAAACTTACGAAGTTTTTTTGTAAAATCT
TTGTCGAAGAACTAACCGAAGTCTTGGAAAGAAATTTCACCAAATCAAAA
AGTGGAGAATTTCCAATTACGACACTTGAGTTTTATGATGCCATGGATGA
AACATGTGAAAACATGGACAAGTACACAGTGACGCGAGTCAATTCGTTTC
GTTACAAAAAAGGAGcctCACTACTGCGAAAAACGTTCGAAGAAGCTCAA
AAGGATTCCAAGATCAAACATTGGTCTTATACCACGCCATCTGATAAGAT
TGACGACCCTACTGGTGAGATACAAAGACTCAAAGAGAAGTGTTGGAGAT
TGACTGAATACCACGGACAAAAGAACTTGCAACGTTGGttgaaaaaacat
caaaatgaaaacatattgAATTGGTTTTGCGAAGATATttatctaaaaaa
taataaaaaagGGTGCATTTCAAAACAGATTTGGAAAGATGACGAAGTCA
AGATCCGAGATGAATTATGATGCAGcacatcaaaataagaaatattataa
tagAAACAAAACTGCATAATTTCCATGGTTTCNTC
Run BLAST on NCBI

transcript from alignment at sc0000021:612452..619370-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002704 ID=TCONS_00002704|Name=TCONS_00002704|organism=Clytia hemisphaerica|type=transcript|length=6919bp|location=Sequence derived from alignment at sc0000021:612452..619370- (Clytia hemisphaerica)
ATGTAGAATATGACAAGCAAACAAACTTACGAAGTTTTGTAAGATAAGTT
TTCTTTCTTTCTTCCATCCAAGCTATTACTGAAACGAATTTTTTGTTTGC
TATTCTTCGTCTTATTCAACTCCAGTTCTATTTCGTGTACCATAATACGG
CATACTAAATGAAAACAAGCAATTTCGAGTCAGCTCATCAGTCCAAAACC
AGTAAGGCTATTTCAGAAAAAACTTGTACCCCTATGTTGAAGAGGTCTCT
TTTGGACCCACTGGATTTTATTTCAATTTTTCAAGACCCCTTGGATTTTT
TCTCCTCTCTTTTTTGGGCCACCCTGGACTTTCTACCTCTTTTTACTGAC
CACCCTGGATTTTCCAACTCATTTTACTGACCACCCTGGATTTTCTAACT
CATTTTACTGACCACCCTGGATTTTCCAACTCGTTTTACTGACCACGCTG
GATTTTCTAACTCATTTTAATGACCACCCTGGATTTTCTAACTCATTTTA
CTGACCACCCTGGATTTTCCAACTCATTTTACTGACCACACTGGATTTTT
ACACTCGAAAAACCAGACCCCTTAGGTTTTTTTATTTTCCAGACCACACT
GGACGTCACACTTCCTCGACATGGGGGATACAGACTATTTCTGGGATAGC
CCAATCTATTGTTTACAATTTGATTTTATTTCCAATAGTCTTAGCAAGAG
ATTCCGTTGATAAAGATATTTTAGGTATCGGAAGTAGGTGGGTAAAAACC
CGAGGTGGGCTTTTAAATTCAATTCTTACACTGCAAAGAAGTACCTTTAA
GGGCTGCACCTTAGGTAGGTCGCTTTTCTTAAGTGTCCAGCGTAAGTATT
TAGATTGGGACCACCTTGTATTGAGGGTGCGTTCGGAAAATTTTGAACTT
AAACTAAAACCCACAAGCGTCTAACAAAGTTTATGGGTCTTTAATGGAGT
TCAGTTGACTCTCGCTATTTCGAACTCGAACGGAGAATCTTGTGTGTTTT
ATTAAAGAGAAATTCAAATAAGTTCGTAAGTATTTTAAGAGGCTTTCTCC
TTGGTGGGGACTGGAAACAAGTTCGAATTAAAGAAAGGTTCGAATAATAA
AATTTCGAATAAGCGAGAGTGCATTGTATCCTTATTTTTATGGCTGTAGC
GTAGAAAGTTTTTTTTTACATTCTGAATTCTATACTGACCTTGGCATTTT
GTTGGTCTGTTTTGACTGTTTTTGTTGAATTCCAATATCTTTGGGTGAGT
TTTTTGATTGTCTGCTTTCTTTATCTTCTGTGCTTCTTCATCGATGATAG
ATGAAAAGGATGTAGAAAACAAATTTGTTGTGATCGTCAAAATTGCCAAC
AAACTTCTCAACGCCAACATCTTTAAAACTTTATTTTATCTGAAAATTAA
TACAAAAACCTTGACTGAAAACGATAAGCAACAAGAAGCCGAAGTGGTAT
GAAGACCTATAGCGACATAGAAATTGCCGAATGTTTATTCGTAATGCTCT
CCGTTTCTTCCAAAATTAACTTGAATTGTCCTTCTACCATGGACAGCGAC
ATGCAAGACCCGATGCTTTGTCAAAGAAAAGGAATGCAAGGTACTAAAAA
TAAAAAGTCTTAAAGTTTTAAAATTCGAAAATTTTTTCACCCGACTTCAT
AAAAGTTTTTGAAAACATAATAAAACAGAATCCCATTATACAAAGATTTT
GAAATTTGATCGTTTATCTGATGAAACCATGTTTTAAAGCACAAAGAAAA
ATATTTGAAAATTTCTGAATAGAGTTTGCAGCAGTAACAATTTCAACTTT
CGTAAACAGAAAACAAGTTTACCCTACAGTAACCTATAGTCAAACTCAAA
GCATGAAATCTTGCAAATTTCATCAGAGGCCATCAGAGAATATTAACTAA
AAATCAATTTCCAAGTGAAGATTTCCCATGAAGTTTTATTTAATAATATA
AAAGTCTACTAAATGACCTAGAGCCAATATATTTGCTTAGGGTAATAAAT
ATCTTGATTGCACATCTGAATAAATAAGAAAAATTATGAAAACTAAAACG
AAAAAATAAAACTATTATATAAAAAAGATTCACAAATTATGAAAATATCG
AAAAATTAGTTTGTTAATTTTTTTTTGACCGGATCAGTTGAAAATACACC
TATTCGTGTGTGGATGCGTTTTCACCAGAAAATAATAGTTTCAAAAATGG
GGCTTGATGCCGTCCTCGTAGCTACAACAATAATAAGTATTTTTATCAAT
GAAATTCGAACGACGGATGTCGATTCAAAGTACGTTATAGTAGACGGTAT
CAAAGTTTTACGTGCAGATTACGAAGCTTTTTCACGCGCTGAAGAAAAGA
AGAAGGTACAGGATGCGTTGAAAAAAGCAAAAGAAGATTTGATGACCAAA
GAATATCGTTTACAAGAAGAAGAAAGTGAAGAATATGCCAAAAGATTCCC
TAAAAGATGCCATGGTATGCTTTGTAACAGAAAACCTAATATTCCAGGCC
TTGATCCGGGGGCAAAAAATCGATCCTTACGGTGCGTTTTCTTGAAAATT
TTTGACCATTTCAAGGCAAAATATGGTCAGATTTTCCAAAGTTTACACCC
TTAGAGTGCAATTTTTCTCATCTTTGCTCATTTCGACCCTTGCAGTGCAC
TTTTGGAAGCTTGGAAAAAGGACCCTTAAGGGCTACGTACGGTACCTTAA
GGGAATAAATTTTCACGGGGATTATATTTCGCGAATTTTCGCAAATTTTG
CCTTTTTCGCGAAATATAATCCCTCGTGAAAATTTTCAAACTCTCATCTC
TCGCTAAATTCGCGAAATTTAATCCTCACGAAAATTAACTTTTTTACGCT
AAAAATTCTTTCATCTAGGAAACTCTCCTAAACGAGTCTCCATTAGTCGA
ATGTCTCTATAATTCGAATAAATTTTCATTCTTCGTAGCCGTTCGAGTCA
TGGAGACTCTGTACACACAAAATCTCGTAATCAAACTAACGAAAAATGTG
AAAATCTGAAAAAATTTCGCCATTTCGCGAAATTGAATCCTCGCGAAAAT
TTAGAGTCGAAGTTAGTCGCGAAAATAAGTCCCGCGAAAATTAAATTATT
TCACGAGGGAAGCTGTCTCGCCAAAATTAGTTGCCGCAAAAATTAATTCG
CTTAAGGTAGTTCGTTTACCTTGAGTCCTCCCCCTGGACTGATACAGGGG
TGTAAAAATATGTGAAAGTGACATTATGAAGCTCCACACGTTCAACCATG
GCCTAATTAGATTGATTCTTGGCCTTGACAATTTGTTCTTCTTTTCAGTT
TGTAAAATCTTTGTCGAAGAACTAACCGAAGTCTTGGAAAGAAATTTCAC
CAAATCAAAAAGTGGAGAATTTCCAATTACGTAAGTGAGACCATGGTCTA
CAAAATATACCATCTGATAATATTTTAAGTACATAGACCATGATTCCTAG
ATTATCCCTAAATATTCAAAAAATAGATTCTTCGGTTAAGTTTGGAATAG
TTCAACAGATTAAAGTAATTTTCAATGACACTATACTAGGCTATTGTTAT
TTTTTCTTTTGAAGATTATTTTTTTAATAATTTTTAACGTGAATGTCCCT
AAAAAATTTTTTAACATGCTCAGCTTCTGTTTCTTTATTATACTTATAGA
GGTCTTGCTCTTATTTTTAGGACACTTGAGTTTTATGATGCCATGGATGA
AACATGTGAAAACATGGACAAGTACACAGTGACGCGAGTCAATTCGTTTC
GTTACAAAAAAGGAGGTAGGAAACTGATTACTCCCCACTGAGACGCATGC
ACTTTATAGGTCATGGCTCCTTAAGAGAATCTGCCCAGGTTGACGCACCT
TTTTGTCCTTTTTGTTCAGATTTAGGATGAGTATTAAATCAGCTTTTGGG
CGCGGTGATTGGATAAAGAGCAAAATAAATGGCACCCACACAAGCGTCAA
TTAAAAAATAAACGTTAGAACCTAGTCGTTTTCGCTCTCGTTTTCAAGCA
AGACGCAACGCGGTTTTGAATATTTTTACTAAAAAAACAGGTCAGATCGT
CAAATTCACCATATCCCTTAAGGGCAAAGCGTGGTATGCGCAGAATGAAT
GATCTGTTGTGAGATCAGTATGAAACTTATTTCATTCATTTAATACGGTG
CTAAACTGAAATATTTAACGAATAACTCTGCGTCAAGAATATTATTCTCC
CAGCCTTGTGGGAAAGCTATTCGGTCTTAGCGAGATACAAAAAGAGGCTT
TTCCGTCTAATAAAAATGACTGCCACTAAAAAAGATTGTTCAAAGTGACA
AAATTTTGCAGGACAGTACTTCAAGAGTTAAAGTGTCTGCTCAATAGGGT
AAACAAACTATCTTCTATGTGAAGCAGTCAGTAGGCAAGGCTATTGGTTG
GTTAGTCGTTTGGCTCACCGAAACGTTTTAGGTTTAATCAATTCGACGTC
AGAGTTGACGAATGTAACTCCGGCAGTTAGTACCTAAAATAATATCGAAT
AAGTTAGATGTCACGTCTCACATTTATTTTGACACAGTCTCCACAGTTTT
TCACTTATGTTAAGAATAATTTTCAATTTTTCAGCCTCACTACTGCGAAA
AACGTTCGAAGAAGCTCAAAAGGATTCCAAGATCAAACATTGGTCTTATA
CCACGCCATCTGATAAGATTGACGACCCTACTGGTGAGATACAAAGACTC
AAAGAGAAGGTTAGATAGATTGTTCTTTTCTATTTTCTCTCTTGTTAATG
AGTTGTTCAGGCCCCGGCTTCAAGCTTCCTCATCTTTATAACTCTGTTCC
TGTAGTTGTCCACCCATGTCTCATTTTGAACCATCGAAATCAAAGCACAA
AAGGCTAGAGTGGGATCTTCAACTGTTTCCCAAGCAATAAAAAGTGACGC
CTAAAAGATTGACAAGGTATTCAGAATAACAGATTGAATCTAGCGCTATT
TTGTTTTCACGCCACTATTTTTCGAAATCTGGTGATACTGATATATATAG
AATTTCATCTCTAGCCTCTTCAGGGCTTTGAATTTTGCGAACCCTATTTT
TTCACCCAGTGGAGATAAATCTTTCTAATGAATTTTGCAATGGATAAAAA
ATCGATTAATTCAGCTCAAGAAAGTGAGAATAGTCTAGGGGAATTTTTCC
CTTTTTTTTTCTAGAGGGGAGTGTCCTATTTGGTATGTGATACAGGGGTG
TTGCCCTAGCAACAATATTTAAATATTTTTTTGCTCTTGCGAAAACAGTG
TTGGAGATTGACTGAATACCACGGACAAAAGAACTTGCAACGTTGGTTGA
AAAAACATCAAAATGAAAACATATTGAATTGGTTTTGCGAAGATATTTAT
CTAAAAAATAATAAAAAAGGTAAGTTCACATAGTTTGATTCTCGATACAG
ATTTCTTTATCTATTCGCAGATATGTGTTTCGTCCCTTTCAGGACTCGTG
AGTGTGGTTTGGGTAAGCGAGCACAAACTAGTTATATCACCAGAGTATGC
TTAAGCGCTAAAAATGTTATCATCGTACTATTTTGATAGTTGATTCATCA
AACTCTGACTGAATTGAGACTTAAGAATTAGATCATGAAAGAAAGTGATT
ACAAATTTTCGTCTGAAAATTATAAAGCTCCAAGATCGTTGACGACAAGT
GTTGAATTTTTCATAAGTTGTAATGAAAACAACACTTTTCTTTATAAAAA
TGCAAAGTTTCCTATTTCAGAACTACAATCAAGGTCATAATATATTGAGA
ATTTTGGCTATTTTAACGTTTTTCAAGATTTAAAGTTCTGGCGAGAAAGT
CGATTTTTGGCTATCTTTTTAATTTAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTC
CCTTTTTTCTCAAATATTATGACCTTGATTGTAGTATTTTAAATACGTTT
ACAGTCTTAAGATTCGAAATCTAAACCATAATGATTAATTTTCAGGGTGC
ATTTCAAAACAGATTTGGAAAGATGACGAAGTCAAGATCCGAGATGAATT
ATGATGCAGCACATCAAAATAAGAAATATTATAATAGAAACAAAACTGCA
TAATTTCCATGGTTTCNTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001462XLOC_001462Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002704-exon-sc0000021-1575043694:619333..619370TCONS_00002704-exon-sc0000021-1575043694:619333..619370Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1575043694:615991..616072TCONS_00002704-exon-sc0000021-1575043694:615991..616072Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1575043694:615606..615700TCONS_00002704-exon-sc0000021-1575043694:615606..615700Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1575043694:614662..614786TCONS_00002704-exon-sc0000021-1575043694:614662..614786Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1575043694:614002..614122TCONS_00002704-exon-sc0000021-1575043694:614002..614122Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1575043694:612452..612575TCONS_00002704-exon-sc0000021-1575043694:612452..612575Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1510915933:619333..619370TCONS_00002704-exon-sc0000021-1510915933:619333..619370Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1510915933:615991..616072TCONS_00002704-exon-sc0000021-1510915933:615991..616072Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1510915933:615606..615700TCONS_00002704-exon-sc0000021-1510915933:615606..615700Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1510915933:614662..614786TCONS_00002704-exon-sc0000021-1510915933:614662..614786Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1510915933:614002..614122TCONS_00002704-exon-sc0000021-1510915933:614002..614122Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1510915933:612452..612575TCONS_00002704-exon-sc0000021-1510915933:612452..612575Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1491911889:619333..619370TCONS_00002704-exon-sc0000021-1491911889:619333..619370Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1491911889:615991..616072TCONS_00002704-exon-sc0000021-1491911889:615991..616072Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1491911889:615606..615700TCONS_00002704-exon-sc0000021-1491911889:615606..615700Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1491911889:614662..614786TCONS_00002704-exon-sc0000021-1491911889:614662..614786Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1491911889:614002..614122TCONS_00002704-exon-sc0000021-1491911889:614002..614122Clytia hemisphaericaexon
TCONS_00002704-exon-sc0000021-1491911889:612452..612575TCONS_00002704-exon-sc0000021-1491911889:612452..612575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:612452..619370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.10055	0.871802	0	0	0.440699	0	0.119307	1.38069	0.497166	0.408738	1.69746	0.72887	0	0.647948	3.20583	0	0.847545	0	0.165192	2.6771	5.78367	0.0307049	0	0.177591	0.551684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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