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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002698 ID=TCONS_00002698|Name=TCONS_00002698|organism=Clytia hemisphaerica|type=transcript|length=1414bp
ATTCAGAATCGCTCTGTTCTACTCAAAGATGTGCAGCATGTCACCAGAAC
GCTACCTGCTCCATAGACAAAGAAACATATGAAACAAAATGTGTTTGTAG
TATTGGATTCATTGGCAATGGTTCATATTGTTCACCAGAACTGGTTACAA
GTTCTAAGTATCCTATGAAGACAACTGAAACAGTCGATTCTGAAAAAGAT
GGTATTTCCATAGACGTACAAAATGAATTAAATATTGATCCTCCTAAAGG
GAAACAAATTACCGGAAAGTTAAAAGGTAACGAATCAAGTGGTTCAGCAA
TGGGAGTAACATCATTCATCATGGCATTATTTGCTTTAATGCTTGTTTTC
ACTTTGATATGCTTTATCCACAAGAAATTCGGTCTCAAATGTCACAAAAG
ATCCAGTAAAGTTGATCCAAAGATGAGGAAACCAACCGGTGGTCGATTCA
GGAGTTTAACATCGATGTTTAATGGTCATTTTAACCGTAAACCATCGACA
GCTTCAGTCAATTATAAAACGGAAGATATGTTTGACATTCTGAAACATCG
TTTCTCTCTTTATGATGAAGAAGCAATCAGAAATCATCAATTTCCAAGAG
CACAAAATACTACTAGTTGATcgtacagatttctgtaaagtccgaagggc
tagatgtcgcgCTAGATTTCAGCTCttacaagcaaaaaataaaattaata
tcgcaaaaaatattgctgctattgttttcgaaaatctgcgAAGCTTTTAT
TAGTCAAgtactgaaattctattgtattatcacgtgacctaggtaggatt
tcctacctaacctcggcacacttttcagctaaagtttgacatctagccct
tcgggctttattaATCTGTGGTTGATCGTCTCTTCTTAGCTGGCAAACAG
CATACCTTTATCGTCTATACTTAACATTGATACGATGATACGATGTGAAT
GGTTTTCGACATCTTGATCATGGGACTTTTTTCGGACATACTCCCACGTT
GATTCCATTATGAACTGATTTGTAGCCGGACTAGGGATTGTCGGACTAGT
ATAGTGTATACTTGGTTTTCGTATCGCTTTTGCTGTAAATATCACCAACC
GAGCTTTCGGAGCTGTCTTATCGGACATGAAAGCAGCTTTACTCTGATCT
CTGATCCCTCACCAACCTAGGTGCATTCTGTTTAAACTTCACACGAACAA
CATTTTTCTATAGATGCCTACTTTTTTAatcccctgtctcacagccccgg
taaaactttttcccacagcggGGATGAAATTTTCCATTGTAATCCCATTT
GGGATAGagattttattgttccaagcttaaaaaatccagtggggatggtt
ttggagtacaagTTTTTACAATGGAGTTTGAATGGGGatgtaatcaaagt
caatttcctagtgg Run BLAST on NCBI transcript from alignment at sc0000021:586456..590244- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002698 ID=TCONS_00002698|Name=TCONS_00002698|organism=Clytia hemisphaerica|type=transcript|length=3789bp|location=Sequence derived from alignment at sc0000021:586456..590244- (Clytia hemisphaerica)
ATTCAGAATCGCTCTGTTGCAGGTGAGTTGGACTACAAACACATCTCAGA
CGAACTTTGTGGGACTAAAATCTCACATTCGCAATAAACATACATTTTTT
CTTTATGAGCATTGCACTTATAAGCATATCCAGGTTAGATATGGCAAATT
TTGGGAATTTGAGTTTCATTGTTTTCTAGCCAAAAAGTTCAGTGGGGATG
GAAAAAATAGCACAACATTCTGCAGTGAGGATTTGCTTACCTGATTATTT
TCAGCGGGGACAAATTTTTTAGCATAATTGACCAATTTTTCCGGTGGGCA
GGGGCCCCAGTGGGTCTGTGAGAAGGGGTGTGATAAGGATAACTTAATAA
TGTTTTTACTGTAATTGTTTGAGAAAAATGTCTCTCCTTTAAAGCAGTCG
AATAAGAACTCTGGGATGGTGCAGTGCCCATGCAGTGAGAAAGCAATATT
TCCCATTTCCTTTAAAATTGACATTGTGAGAATTTTAATAACCAAGACGT
AAACAAAATACTTTTATGTTGTGTGCCATGCTAACATGCATCTGGTTTGT
CAATTGTTTCTTCTGTTTTGTTAATCATAAACAAAATCAGTAAAAAACAC
ATATTTCTGATGGACAAATAGCTTGTTTGTTCTCACCTTTCTCACACCCA
TTACATACCCGTCACAAGGCTAACAAAGAATGCTTTGTGATTTACACGTT
TTTTTATAAGAACATCCAAAATTTTTGAAGCCTTGAGATGTTCTCAACTT
TTAGAGTTTTAAGCCTAAAAATGTTCTTAACATGTTCTTATTTTCGCCAT
TTTAAGAGTACTTTTGTCCATTTTCCTATGAACTCGGTGTTCGCAAAGCC
TTAAAGTGTTCTTAACTTGTTCTTAAGATTTTGGCTGTCGAAGCCTTGTG
TTCTTATATAGTTTGTTCTTATTAAAAAAATTTGTTTAACCCTAATTATC
AAACTGATCAGAAGAGCCAAGAGATGCAAAAGAATCTGCACCGGCAATCC
CCTATTAGTATTACTTTCCAAAGATTTTTCTACACACGACTATAACCTTT
TTCAAAGATTTTATGGAAACGTTTCTGTTACCACCATTTAGACCTAAGCT
AAAGTGTCCAATTTAAATAAAACACTTACACATATCCCTAGTTCTACTTT
GCAGTCAAAATAGTTCCCGTATTTTTCGTGATACCATTGAGTCTTAAACC
GAAGGCTAGAGACGATAATCTCCAACCCTCCCAAAAAGAAAAACTGTACG
CTTAAGATTTGCGCCGTGTATTTCGGATAACGGATTGAATTTAGCACTTT
CTTTTTTCACGCTTTACATCTTTCAAATGTTGGAGGTAAACAGCATTTAC
CGCCCAGCTATTTTCAATCCACTGTTTGTATGAAAACCACACGGGCGTGC
GCAAATTATAAAGGAAATAAGTGGCTTCAAATCCTACAAAGGAGATTCGG
CTCTAGCCTTCGGATAACTTATTGGGTGGTATAGGCTAGCTTAAGCCTTC
TTTTTCTTGATTTCTTTGCGGGATGTAAAATTTTCACAAATATTAAAATA
TACCAAAGATTTTACTTTTATTTTCATCAGCTACTCAAAGATGTGCAGCA
TGTCACCAGAACGCTACCTGCTCCATAGACAAAGAAACATATGAAACAAA
ATGTGTTTGTAGTATTGGATTCATTGGCAATGGTTCATATTGTTCACCAG
AACTGGTTACAAGTTCTAAGTATCCTATGAAGACAACTGAAACAGTCGAT
TCTGAAAAAGATGGTATTTCCATAGACGTACAAAATGAATTAAATATTGA
TCCTCCTAAAGGGAAACAAATTACCGGAAAGTTAAAAGGTTTGTATCCTC
CACTAGTCATTGAAAATCGTCTGCAAGAATTTTCCTTAGTAGCATAGTTA
CCCAGTAAATGAATTTCGAATTCCTTTTCCGCAGGGGATATCTTTGCCCG
GTTGGCGTTGATTTTTCCGTCTTAAATTTACGGTCATGTCAATATCAATA
ATTCATTCTCAACTTCAGTTGAGCTAGAATCTACTGACAATGTGTGTCCA
TGTGTTTGTCAGTCTGTCACAAAACTTTAAGGCAGCCGGCGGACTTCAAA
ATGGTCGGATTTGGATCACTTGTTCCTTGGATGAATATATTTTTGCATTT
TTCAAAAATTTTGATTTTTGGGTTCTGGGTGGGCACTACCTTTTTGCTGC
AATTGGGTCTATTAATAATTTGAATAAAAATCAATGCATTGAATGTTCAC
TGTGGCATAGAACTCAGAATTTTCTGGAGCTAGCTAATTTGTTATTTTTT
GGTCAAGTAAGGTACAAACAAAACTCATGTATGCACCTCAACCCTGAAAT
TATGAAGGAGACTTTCATTGCATTGATGATTTTACATAGACAAAGGCATT
TTTCTGTCATTCCTCTCTGTAAACTCGACCCAGTTGAGATCGATAACAGG
TGTTATAGCTCTAGTAGACAGCTGGCCTATTCTGTTGTCTAGTCTAACTG
TTAGAGCAGGCAAAAAATGGGCAGAAATTTGGCAATTAAAATATTTTCTT
TGACATAAAAATAGAGCAATACATTTTTTGAGACTGCCCACTTTTTGGCC
ATTTTAATTTATAAAGATAAGTGGACCTGAAATCTTTATTGTTTTTCACA
GGTAACGAATCAAGTGGTTCAGCAATGGGAGTAACATCATTCATCATGGC
ATTATTTGCTTTAATGCTTGTTTTCACTTTGATATGCTTTATCCACAAGA
AATTCGGTCTCAAATGTCACAAAAGATCCAGTAAAGTTGATCCAAAGATG
AGGAAACCAACCGGTGGTCGATTCAGGAGTTTAACATCGATGTTTAATGG
TCATTTTAACCGTAAACCATCGACAGCTTCAGTCAATTATAAAACGGAAG
ATATGTTTGACATTCTGAAACATCGTTTCTCTCTTTATGATGAAGAAGCA
ATCAGAAATCATCAATTTCCAAGAGCACAAAATACTACTAGTTGATCGTA
CAGATTTCTGTAAAGTCCGAAGGGCTAGATGTCGCGCTAGATTTCAGCTC
TTACAAGCAAAAAATAAAATTAATATCGCAAAAAATATTGCTGCTATTGT
TTTCGAAAATCTGCGAAGCTTTTATTAGTCAAGTACTGAAATTCTATTGT
ATTATCACGTGACCTAGGTAGGATTTCCTACCTAACCTCGGCACACTTTT
CAGCTAAAGTTTGACATCTAGCCCTTCGGGCTTTATTAATCTGTGGTTGA
TCGTCTCTTCTTAGCTGGCAAACAGCATACCTTTATCGTCTATACTTAAC
ATTGATACGATGATACGATGTGAATGGTTTTCGACATCTTGATCATGGGA
CTTTTTTCGGACATACTCCCACGTTGATTCCATTATGAACTGATTTGTAG
CCGGACTAGGGATTGTCGGACTAGTATAGTGTATACTTGGTTTTCGTATC
GCTTTTGCTGTAAATATCACCAACCGAGCTTTCGGAGCTGTCTTATCGGA
CATGAAAGCAGCTTTACTCTGATCTCTGATCCCTCACCAACCTAGGTGCA
TTCTGTTTAAACTTCACACGAACAACATTTTTCTATAGATGCCTACTTTT
TTAATCCCCTGTCTCACAGCCCCGGTAAAACTTTTTCCCACAGCGGGGAT
GAAATTTTCCATTGTAATCCCATTTGGGATAGAGATTTTATTGTTCCAAG
CTTAAAAAATCCAGTGGGGATGGTTTTGGAGTACAAGTTTTTACAATGGA
GTTTGAATGGGGATGTAATCAAAGTCAATTTCCTAGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002698-exon-sc0000021-1575043694:590227..590244 | TCONS_00002698-exon-sc0000021-1575043694:590227..590244 | Clytia hemisphaerica | exon |
| TCONS_00002698-exon-sc0000021-1575043694:588407..588664 | TCONS_00002698-exon-sc0000021-1575043694:588407..588664 | Clytia hemisphaerica | exon |
| TCONS_00002698-exon-sc0000021-1575043694:586456..587593 | TCONS_00002698-exon-sc0000021-1575043694:586456..587593 | Clytia hemisphaerica | exon |
| TCONS_00002698-exon-sc0000021-1510915933:590227..590244 | TCONS_00002698-exon-sc0000021-1510915933:590227..590244 | Clytia hemisphaerica | exon |
| TCONS_00002698-exon-sc0000021-1510915933:588407..588664 | TCONS_00002698-exon-sc0000021-1510915933:588407..588664 | Clytia hemisphaerica | exon |
| TCONS_00002698-exon-sc0000021-1510915933:586456..587593 | TCONS_00002698-exon-sc0000021-1510915933:586456..587593 | Clytia hemisphaerica | exon |
| TCONS_00002698-exon-sc0000021-1491911889:590227..590244 | TCONS_00002698-exon-sc0000021-1491911889:590227..590244 | Clytia hemisphaerica | exon |
| TCONS_00002698-exon-sc0000021-1491911889:588407..588664 | TCONS_00002698-exon-sc0000021-1491911889:588407..588664 | Clytia hemisphaerica | exon |
| TCONS_00002698-exon-sc0000021-1491911889:586456..587593 | TCONS_00002698-exon-sc0000021-1491911889:586456..587593 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:586456..590244 - |
Blast
The following BLAST results are available for this feature:
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