|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002697 ID=TCONS_00002697|Name=TCONS_00002697|organism=Clytia hemisphaerica|type=transcript|length=1146bp TTCAATTGATTCCAAATGCCCCTGGGAAATTAAATTTTAAGATCATCAGT CTATAAATACGCCAAAATTCAATCGAAGGTCAGAACATTTACATTTCACA ACATCAGTAGACGATCGCAAAGACATAAGGCTAACAATTAATTGAAAACC TGGTACAATATGGGAGGCTATTTATCTTTCGAACAAGACAAAACTACTGC TTCTGTTGAAGAAGTTAAGAAATATTGCGAATCTGTTGTGTTTGTACGTT TCAATGGTCAAACTAACAAATTCAAGTGCACTGATCATGAAGCAGCAGAT GGCCCTGGTCAGCCCGAATCAGAACTTGGTCACATCCTTCACCAACTAGA TCAAATCATCCGTATGGCACCCACAGTGACTGAATTCGAAATTACAGAAC caatcaagaaaattttgaaaatgatagcTGAAATAAGAGTCTGTACTGAG GATTGTGAGAGCGTAGATAAATGTTATGAACGACTTTTGGAAGATGCtga gaaatttgcaaaaatctacCAAGAAAGAGGGTGTAAATCAGAAGTTTTGG AAAATGACCATTCATTTTACTGGGGAACTCGTCAACAAATGTTATTCGGT AAAGTCATTTGTGATTGGCTAGCTGAACACAAAAATGCACCAATGGATCC AATCTTTGGAACGCTCTTGAACCCAACTGGAGGAAGAGTTGGTCCTGGTG ATACTGGCTTTTTCCACGACTCCTTGTTTGACAACATGGGACCTTTTGCT TATCACTCTGCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACCACAA GACTGGACCAGGGTACAACTACCTCAATAAGGGTATCTTTGGTGATTGGA GTCCATTGGGAGGACAATACAGTGGATTAGAGTTTTGGAATGAAACATGC GAGAAATTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGAAATG ATATTTGTGTTTTCaatttaagttttatttattgtattttaaatgtaaat tctaaaaattgtaaaaaataattaatttgaaaacaaactgcaatGAGAAA GATAAACGAATCTTTGGTTATCATACCGTATCAGTCCATATTGCTGATTT AAAAACCCTCAACCACTGATCAGAAGTCTTACTTACTCACCGTGCT Run BLAST on NCBI protein sequence of TCONS_00002697-protein >TCONS_00002697-protein ID=TCONS_00002697-protein|Name=TCONS_00002697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MGGYLSFEQDKTTASVEEVKKYCESVVFVRFNGQTNKFKCTDHEAADGPG QPESELGHILHQLDQIIRMAPTVTEFEITEPIKKILKMIAEIRVCTEDCE SVDKCYERLLEDAEKFAKIYQERGCKSEVLENDHSFYWGTRQQMLFGKVI CDWLAEHKNAPMDPIFGTLLNPTGGRVGPGDTGFFHDSLFDNMGPFAYHS AVHDGFGYLKTNHKTGPGYNYLNKGIFGDWSPLGGQYSGLEFWNETCEKL EPEKADESVFVMK Run BLAST on NCBI transcript from alignment at sc0000021:516956..519405- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002697 ID=TCONS_00002697|Name=TCONS_00002697|organism=Clytia hemisphaerica|type=transcript|length=2450bp|location=Sequence derived from alignment at sc0000021:516956..519405- (Clytia hemisphaerica) TTCAATTGATTCCAAATGCCCCTGGGAAATTAAATTTTAAGATCATCAGT
CTATAAATACGCCAAAATTCAATCGAAGGTCAGAACATTTACATTTCACA
ACATCAGTAGACGATCGCAAAGACATAAGGTAAAGCTCAATTTCTTATAT
TTCCATGCCGCGTATGAAATTAACTTAAATGGTCGCTTTCTTTACTCAAA
CTAGTATTTTCCATTTACCATCACGAATAATGTATATTTTAACCTTCTAT
AAACTAACCTGATAACAGCTGTTCATAATTTTCTTACGGGCACAGTATAC
CTCTGAAGGCCCTTGAAAATTAATCATCTGAGGAAAATAGTTCTCCTGTG
GAAAATTCTACTGTACAACAAGAATCTTGTTGTGCGCTGGAAAGTCAAAA
ACTAAATTTTCCTGATACATCGCCCTATTTTTAAACACAATTTAAGCAGT
TTTGTTGTCATTCCTAGTCCTTTAAGACTAGTGTGGTCCTTACGATTCTG
AGATTAGCATATTCGTCAGGTTTTCACCCATCCTTTTAGAGCTTTAGCGT
GGTGGGCAGAAAACAATCACGATCTGATCTCAGGTTACTGTAAACAAATT
CAAGGCAATTGGCGTCAAATTTATTCAAAACAGTATCTCGTTTAACCAGG
AATGATTTTGTAGTAAAAGTTTCATTTACACCTTCTCCTTAATTTCACAC
AGGCTAACAATTAATTGAAAACCTGGTACAATATGGGAGGCTATTTATCT
TTCGAACAAGACAAAACTACTGCTTCTGTTGAAGAAGTTAAGAAATATTG
CGAATCTGTTGTGTTTGTACGTTTCAATGGTCAAACTAACAAATTCAAGG
TGAGTTTTTAAAAACTAAAGGTACACGTTTTTTTACAAGAACAAACTATA
TAAGAACATAAGGCTTCGATAGGCTATTTTAGCCATATTTTCCAGTGGTT
AGGGGTTTCCATCGGGCCTGTGTGTAACTATCAATCAGATATTTGACACT
ATTCTGTAAGGAAATTATGTCTTTGAAACCTCTTACGATGATTTTGTAAA
CTTTTTTCCACATCTTTTTCAGTGCACTGATCATGAAGCAGCAGATGGCC
CTGGTCAGCCCGAATCAGAACTTGGTCACATCCTTCACCAACTAGATCAA
ATCATCCGTATGGCACCCACAGTGACTGAATTCGAAATTACAGAACCAAT
CAAGAAAATTTTGAAAATGATAGCTGAAATAAGAGTCTGTACTGAGGATT
GTGAGAGCGTAGATAAATGTTATGAACGACTTTTGGAAGATGCTGAGAAA
TTTGCAAAAATCTACCAAGAAAGAGGGTGTAAGTATATTGCAAATTTTTG
GATTAGAAACACAGTGTCTGCGATATTGTCATTTCCATCACGTTACCAAA
TACTCCTCTAGTTATTAATTAAAAAATTTATGTCTTAAACAATTAAAGGG
AACGGAAAATTTTATAGACCGTTTTTACGAATTTATTACATGATATTAAA
GTTGAAGATGTTTCATAAATGTTTTACAGGTAAATCAGAAGTTTTGGAAA
ATGACCATTCATTTTACTGGGGAACTCGTCAACAAATGTTATTCGGTAAA
GTCATTTGTGATTGGCTAGCTGAACACAAAAATGCACCAATGGATCCAAT
CTTTGGAACGCTCTTGAACCCAACTGGAGGTTAGTAACTTGTTAATTTCT
CAAAGGAAGAGAATCTTATCAATGATTTTAATTATTTCTGGGGAAGTTTT
TTAGTCGAGTTCGGAATTTTTGAAATATTGATAGATTATGAAAGCGTTGG
ATAGCCTAGTCTTCTCCATTCTTGTGTACTTATGAAGTTCTTTATTTCTA
TAGTGTATTGAATATTTTGTGGGATATCTTGATATATAAATTGACGCACC
AAATATTTCTGCTACCGCTTAAAGAAATGCCTTTTGAAAAAACTCAAAAC
TTAAGACTATACGTAATGACTAATTTCTTTATTCAGGAAGAGTTGGTCCT
GGTGATACTGGCTTTTTCCACGACTCCTTGTTTGACAACATGGGACCTTT
TGCTTATCACTCTGCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACC
ACAAGACTGGACCAGGGTACAACTACCTCAATAAGGGTATCTTTGGTGAT
TGGAGTCCATTGGGAGGACAATACAGTGGATTAGAGTTTTGGAATGAAAC
ATGCGAGAAATTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGA
AATGATATTTGTGTTTTCAATTTAAGTTTTATTTATTGTATTTTAAATGT
AAATTCTAAAAATTGTAAAAAATAATTAATTTGAAAACAAACTGCAATGA
GAAAGATAAACGAATCTTTGGTTATCATACCGTATCAGTCCATATTGCTG
ATTTAAAAACCCTCAACCACTGATCAGAAGTCTTACTTACTCACCGTGCT
Coding sequence (CDS) from alignment at sc0000021:516956..519405- >TCONS_00002697 ID=TCONS_00002697|Name=TCONS_00002697|organism=Clytia hemisphaerica|type=CDS|length=3168bp|location=Sequence derived from alignment at sc0000021:516956..519405- (Clytia hemisphaerica) GAAGAGTTGGTCCTGGTGATACTGGCTTTTTCCACGACTCCTTGTTTGAC AACATGGGACCTTTTGCTTATCACTCTGCAGTCCATGATGGTTTTGGTTA TTTGAAAACCAACCACAAGACTGGACCAGGGTACAACTACCTCAATAAGG GTATCTTTGGTGATTGGAGTCCATTGGGAGGACAATACAGTGGATTAGAG TTTTGGAATGAAACATGCGAGAAATTGGAGCCAGAAAAAGCTGACGAAAG TGTTTTTGTTATGAAATGAGTAAATCAGAAGTTTTGGAAAATGACCATTC ATTTTACTGGGGAACTCGTCAACAAATGTTATTCGGTAAAGTCATTTGTG ATTGGCTAGCTGAACACAAAAATGCACCAATGGATCCAATCTTTGGAACG CTCTTGAACCCAACTGGAGTGCACTGATCATGAAGCAGCAGATGGCCCTG GTCAGCCCGAATCAGAACTTGGTCACATCCTTCACCAACTAGATCAAATC ATCCGTATGGCACCCACAGTGACTGAATTCGAAATTACAGAACCAATCAA GAAAATTTTGAAAATGATAGCTGAAATAAGAGTCTGTACTGAGGATTGTG AGAGCGTAGATAAATGTTATGAACGACTTTTGGAAGATGCTGAGAAATTT GCAAAAATCTACCAAGAAAGAGGGTATGGGAGGCTATTTATCTTTCGAAC AAGACAAAACTACTGCTTCTGTTGAAGAAGTTAAGAAATATTGCGAATCT GTTGTGTTTGTACGTTTCAATGGTCAAACTAACAAATTCAAGGAAGAGTT GGTCCTGGTGATACTGGCTTTTTCCACGACTCCTTGTTTGACAACATGGG ACCTTTTGCTTATCACTCTGCAGTCCATGATGGTTTTGGTTATTTGAAAA CCAACCACAAGACTGGACCAGGGTACAACTACCTCAATAAGGGTATCTTT GGTGATTGGAGTCCATTGGGAGGACAATACAGTGGATTAGAGTTTTGGAA TGAAACATGCGAGAAATTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTG TTATGAAATGAGTAAATCAGAAGTTTTGGAAAATGACCATTCATTTTACT GGGGAACTCGTCAACAAATGTTATTCGGTAAAGTCATTTGTGATTGGCTA GCTGAACACAAAAATGCACCAATGGATCCAATCTTTGGAACGCTCTTGAA CCCAACTGGAGTGCACTGATCATGAAGCAGCAGATGGCCCTGGTCAGCCC GAATCAGAACTTGGTCACATCCTTCACCAACTAGATCAAATCATCCGTAT GGCACCCACAGTGACTGAATTCGAAATTACAGAACCAATCAAGAAAATTT TGAAAATGATAGCTGAAATAAGAGTCTGTACTGAGGATTGTGAGAGCGTA GATAAATGTTATGAACGACTTTTGGAAGATGCTGAGAAATTTGCAAAAAT CTACCAAGAAAGAGGGTATGGGAGGCTATTTATCTTTCGAACAAGACAAA ACTACTGCTTCTGTTGAAGAAGTTAAGAAATATTGCGAATCTGTTGTGTT TGTACGTTTCAATGGTCAAACTAACAAATTCAAGGAAGAGTTGGTCCTGG TGATACTGGCTTTTTCCACGACTCCTTGTTTGACAACATGGGACCTTTTG CTTATCACTCTGCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACCAC AAGACTGGACCAGGGTACAACTACCTCAATAAGGGTATCTTTGGTGATTG GAGTCCATTGGGAGGACAATACAGTGGATTAGAGTTTTGGAATGAAACAT GCGAGAAATTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGAAA TGAGTAAATCAGAAGTTTTGGAAAATGACCATTCATTTTACTGGGGAACT CGTCAACAAATGTTATTCGGTAAAGTCATTTGTGATTGGCTAGCTGAACA CAAAAATGCACCAATGGATCCAATCTTTGGAACGCTCTTGAACCCAACTG GAGTGCACTGATCATGAAGCAGCAGATGGCCCTGGTCAGCCCGAATCAGA ACTTGGTCACATCCTTCACCAACTAGATCAAATCATCCGTATGGCACCCA CAGTGACTGAATTCGAAATTACAGAACCAATCAAGAAAATTTTGAAAATG ATAGCTGAAATAAGAGTCTGTACTGAGGATTGTGAGAGCGTAGATAAATG TTATGAACGACTTTTGGAAGATGCTGAGAAATTTGCAAAAATCTACCAAG AAAGAGGGTATGGGAGGCTATTTATCTTTCGAACAAGACAAAACTACTGC TTCTGTTGAAGAAGTTAAGAAATATTGCGAATCTGTTGTGTTTGTACGTT TCAATGGTCAAACTAACAAATTCAAGGAAGAGTTGGTCCTGGTGATACTG GCTTTTTCCACGACTCCTTGTTTGACAACATGGGACCTTTTGCTTATCAC TCTGCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACCACAAGACTGG ACCAGGGTACAACTACCTCAATAAGGGTATCTTTGGTGATTGGAGTCCAT TGGGAGGACAATACAGTGGATTAGAGTTTTGGAATGAAACATGCGAGAAA TTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGAAATGAGTAAA TCAGAAGTTTTGGAAAATGACCATTCATTTTACTGGGGAACTCGTCAACA AATGTTATTCGGTAAAGTCATTTGTGATTGGCTAGCTGAACACAAAAATG CACCAATGGATCCAATCTTTGGAACGCTCTTGAACCCAACTGGAGTGCAC TGATCATGAAGCAGCAGATGGCCCTGGTCAGCCCGAATCAGAACTTGGTC ACATCCTTCACCAACTAGATCAAATCATCCGTATGGCACCCACAGTGACT GAATTCGAAATTACAGAACCAATCAAGAAAATTTTGAAAATGATAGCTGA AATAAGAGTCTGTACTGAGGATTGTGAGAGCGTAGATAAATGTTATGAAC GACTTTTGGAAGATGCTGAGAAATTTGCAAAAATCTACCAAGAAAGAGGG TATGGGAGGCTATTTATCTTTCGAACAAGACAAAACTACTGCTTCTGTTG AAGAAGTTAAGAAATATTGCGAATCTGTTGTGTTTGTACGTTTCAATGGT CAAACTAACAAATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002697-exon-sc0000021-1575043694:519277..519405 | TCONS_00002697-exon-sc0000021-1575043694:519277..519405 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1575043694:518557..518703 | TCONS_00002697-exon-sc0000021-1575043694:518557..518703 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1575043694:518078..518333 | TCONS_00002697-exon-sc0000021-1575043694:518078..518333 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1575043694:517727..517876 | TCONS_00002697-exon-sc0000021-1575043694:517727..517876 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1575043694:516956..517419 | TCONS_00002697-exon-sc0000021-1575043694:516956..517419 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1510915933:519277..519405 | TCONS_00002697-exon-sc0000021-1510915933:519277..519405 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1510915933:518557..518703 | TCONS_00002697-exon-sc0000021-1510915933:518557..518703 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1510915933:518078..518333 | TCONS_00002697-exon-sc0000021-1510915933:518078..518333 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1510915933:517727..517876 | TCONS_00002697-exon-sc0000021-1510915933:517727..517876 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1510915933:516956..517419 | TCONS_00002697-exon-sc0000021-1510915933:516956..517419 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1491911889:519277..519405 | TCONS_00002697-exon-sc0000021-1491911889:519277..519405 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1491911889:518557..518703 | TCONS_00002697-exon-sc0000021-1491911889:518557..518703 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1491911889:518078..518333 | TCONS_00002697-exon-sc0000021-1491911889:518078..518333 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1491911889:517727..517876 | TCONS_00002697-exon-sc0000021-1491911889:517727..517876 | Clytia hemisphaerica | exon |
TCONS_00002697-exon-sc0000021-1491911889:516956..517419 | TCONS_00002697-exon-sc0000021-1491911889:516956..517419 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000021 | supercontig | sc0000021:516956..519405 - |
Blast
The following BLAST results are available for this feature:
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