TCONS_00002697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002697
Unique NameTCONS_00002697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002697 ID=TCONS_00002697|Name=TCONS_00002697|organism=Clytia hemisphaerica|type=transcript|length=1146bp
TTCAATTGATTCCAAATGCCCCTGGGAAATTAAATTTTAAGATCATCAGT
CTATAAATACGCCAAAATTCAATCGAAGGTCAGAACATTTACATTTCACA
ACATCAGTAGACGATCGCAAAGACATAAGGCTAACAATTAATTGAAAACC
TGGTACAATATGGGAGGCTATTTATCTTTCGAACAAGACAAAACTACTGC
TTCTGTTGAAGAAGTTAAGAAATATTGCGAATCTGTTGTGTTTGTACGTT
TCAATGGTCAAACTAACAAATTCAAGTGCACTGATCATGAAGCAGCAGAT
GGCCCTGGTCAGCCCGAATCAGAACTTGGTCACATCCTTCACCAACTAGA
TCAAATCATCCGTATGGCACCCACAGTGACTGAATTCGAAATTACAGAAC
caatcaagaaaattttgaaaatgatagcTGAAATAAGAGTCTGTACTGAG
GATTGTGAGAGCGTAGATAAATGTTATGAACGACTTTTGGAAGATGCtga
gaaatttgcaaaaatctacCAAGAAAGAGGGTGTAAATCAGAAGTTTTGG
AAAATGACCATTCATTTTACTGGGGAACTCGTCAACAAATGTTATTCGGT
AAAGTCATTTGTGATTGGCTAGCTGAACACAAAAATGCACCAATGGATCC
AATCTTTGGAACGCTCTTGAACCCAACTGGAGGAAGAGTTGGTCCTGGTG
ATACTGGCTTTTTCCACGACTCCTTGTTTGACAACATGGGACCTTTTGCT
TATCACTCTGCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACCACAA
GACTGGACCAGGGTACAACTACCTCAATAAGGGTATCTTTGGTGATTGGA
GTCCATTGGGAGGACAATACAGTGGATTAGAGTTTTGGAATGAAACATGC
GAGAAATTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGAAATG
ATATTTGTGTTTTCaatttaagttttatttattgtattttaaatgtaaat
tctaaaaattgtaaaaaataattaatttgaaaacaaactgcaatGAGAAA
GATAAACGAATCTTTGGTTATCATACCGTATCAGTCCATATTGCTGATTT
AAAAACCCTCAACCACTGATCAGAAGTCTTACTTACTCACCGTGCT
Run BLAST on NCBI

protein sequence of TCONS_00002697-protein

>TCONS_00002697-protein ID=TCONS_00002697-protein|Name=TCONS_00002697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MGGYLSFEQDKTTASVEEVKKYCESVVFVRFNGQTNKFKCTDHEAADGPG
QPESELGHILHQLDQIIRMAPTVTEFEITEPIKKILKMIAEIRVCTEDCE
SVDKCYERLLEDAEKFAKIYQERGCKSEVLENDHSFYWGTRQQMLFGKVI
CDWLAEHKNAPMDPIFGTLLNPTGGRVGPGDTGFFHDSLFDNMGPFAYHS
AVHDGFGYLKTNHKTGPGYNYLNKGIFGDWSPLGGQYSGLEFWNETCEKL
EPEKADESVFVMK
Run BLAST on NCBI

transcript from alignment at sc0000021:516956..519405-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002697 ID=TCONS_00002697|Name=TCONS_00002697|organism=Clytia hemisphaerica|type=transcript|length=2450bp|location=Sequence derived from alignment at sc0000021:516956..519405- (Clytia hemisphaerica)
TTCAATTGATTCCAAATGCCCCTGGGAAATTAAATTTTAAGATCATCAGT CTATAAATACGCCAAAATTCAATCGAAGGTCAGAACATTTACATTTCACA ACATCAGTAGACGATCGCAAAGACATAAGGTAAAGCTCAATTTCTTATAT TTCCATGCCGCGTATGAAATTAACTTAAATGGTCGCTTTCTTTACTCAAA CTAGTATTTTCCATTTACCATCACGAATAATGTATATTTTAACCTTCTAT AAACTAACCTGATAACAGCTGTTCATAATTTTCTTACGGGCACAGTATAC CTCTGAAGGCCCTTGAAAATTAATCATCTGAGGAAAATAGTTCTCCTGTG GAAAATTCTACTGTACAACAAGAATCTTGTTGTGCGCTGGAAAGTCAAAA ACTAAATTTTCCTGATACATCGCCCTATTTTTAAACACAATTTAAGCAGT TTTGTTGTCATTCCTAGTCCTTTAAGACTAGTGTGGTCCTTACGATTCTG AGATTAGCATATTCGTCAGGTTTTCACCCATCCTTTTAGAGCTTTAGCGT GGTGGGCAGAAAACAATCACGATCTGATCTCAGGTTACTGTAAACAAATT CAAGGCAATTGGCGTCAAATTTATTCAAAACAGTATCTCGTTTAACCAGG AATGATTTTGTAGTAAAAGTTTCATTTACACCTTCTCCTTAATTTCACAC AGGCTAACAATTAATTGAAAACCTGGTACAATATGGGAGGCTATTTATCT TTCGAACAAGACAAAACTACTGCTTCTGTTGAAGAAGTTAAGAAATATTG CGAATCTGTTGTGTTTGTACGTTTCAATGGTCAAACTAACAAATTCAAGG TGAGTTTTTAAAAACTAAAGGTACACGTTTTTTTACAAGAACAAACTATA TAAGAACATAAGGCTTCGATAGGCTATTTTAGCCATATTTTCCAGTGGTT AGGGGTTTCCATCGGGCCTGTGTGTAACTATCAATCAGATATTTGACACT ATTCTGTAAGGAAATTATGTCTTTGAAACCTCTTACGATGATTTTGTAAA CTTTTTTCCACATCTTTTTCAGTGCACTGATCATGAAGCAGCAGATGGCC CTGGTCAGCCCGAATCAGAACTTGGTCACATCCTTCACCAACTAGATCAA ATCATCCGTATGGCACCCACAGTGACTGAATTCGAAATTACAGAACCAAT CAAGAAAATTTTGAAAATGATAGCTGAAATAAGAGTCTGTACTGAGGATT GTGAGAGCGTAGATAAATGTTATGAACGACTTTTGGAAGATGCTGAGAAA TTTGCAAAAATCTACCAAGAAAGAGGGTGTAAGTATATTGCAAATTTTTG GATTAGAAACACAGTGTCTGCGATATTGTCATTTCCATCACGTTACCAAA TACTCCTCTAGTTATTAATTAAAAAATTTATGTCTTAAACAATTAAAGGG AACGGAAAATTTTATAGACCGTTTTTACGAATTTATTACATGATATTAAA GTTGAAGATGTTTCATAAATGTTTTACAGGTAAATCAGAAGTTTTGGAAA ATGACCATTCATTTTACTGGGGAACTCGTCAACAAATGTTATTCGGTAAA GTCATTTGTGATTGGCTAGCTGAACACAAAAATGCACCAATGGATCCAAT CTTTGGAACGCTCTTGAACCCAACTGGAGGTTAGTAACTTGTTAATTTCT CAAAGGAAGAGAATCTTATCAATGATTTTAATTATTTCTGGGGAAGTTTT TTAGTCGAGTTCGGAATTTTTGAAATATTGATAGATTATGAAAGCGTTGG ATAGCCTAGTCTTCTCCATTCTTGTGTACTTATGAAGTTCTTTATTTCTA TAGTGTATTGAATATTTTGTGGGATATCTTGATATATAAATTGACGCACC AAATATTTCTGCTACCGCTTAAAGAAATGCCTTTTGAAAAAACTCAAAAC TTAAGACTATACGTAATGACTAATTTCTTTATTCAGGAAGAGTTGGTCCT GGTGATACTGGCTTTTTCCACGACTCCTTGTTTGACAACATGGGACCTTT TGCTTATCACTCTGCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACC ACAAGACTGGACCAGGGTACAACTACCTCAATAAGGGTATCTTTGGTGAT TGGAGTCCATTGGGAGGACAATACAGTGGATTAGAGTTTTGGAATGAAAC ATGCGAGAAATTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGA AATGATATTTGTGTTTTCAATTTAAGTTTTATTTATTGTATTTTAAATGT AAATTCTAAAAATTGTAAAAAATAATTAATTTGAAAACAAACTGCAATGA GAAAGATAAACGAATCTTTGGTTATCATACCGTATCAGTCCATATTGCTG ATTTAAAAACCCTCAACCACTGATCAGAAGTCTTACTTACTCACCGTGCT

Coding sequence (CDS) from alignment at sc0000021:516956..519405-

>TCONS_00002697 ID=TCONS_00002697|Name=TCONS_00002697|organism=Clytia hemisphaerica|type=CDS|length=3168bp|location=Sequence derived from alignment at sc0000021:516956..519405- (Clytia hemisphaerica)
GAAGAGTTGGTCCTGGTGATACTGGCTTTTTCCACGACTCCTTGTTTGAC
AACATGGGACCTTTTGCTTATCACTCTGCAGTCCATGATGGTTTTGGTTA
TTTGAAAACCAACCACAAGACTGGACCAGGGTACAACTACCTCAATAAGG
GTATCTTTGGTGATTGGAGTCCATTGGGAGGACAATACAGTGGATTAGAG
TTTTGGAATGAAACATGCGAGAAATTGGAGCCAGAAAAAGCTGACGAAAG
TGTTTTTGTTATGAAATGAGTAAATCAGAAGTTTTGGAAAATGACCATTC
ATTTTACTGGGGAACTCGTCAACAAATGTTATTCGGTAAAGTCATTTGTG
ATTGGCTAGCTGAACACAAAAATGCACCAATGGATCCAATCTTTGGAACG
CTCTTGAACCCAACTGGAGTGCACTGATCATGAAGCAGCAGATGGCCCTG
GTCAGCCCGAATCAGAACTTGGTCACATCCTTCACCAACTAGATCAAATC
ATCCGTATGGCACCCACAGTGACTGAATTCGAAATTACAGAACCAATCAA
GAAAATTTTGAAAATGATAGCTGAAATAAGAGTCTGTACTGAGGATTGTG
AGAGCGTAGATAAATGTTATGAACGACTTTTGGAAGATGCTGAGAAATTT
GCAAAAATCTACCAAGAAAGAGGGTATGGGAGGCTATTTATCTTTCGAAC
AAGACAAAACTACTGCTTCTGTTGAAGAAGTTAAGAAATATTGCGAATCT
GTTGTGTTTGTACGTTTCAATGGTCAAACTAACAAATTCAAGGAAGAGTT
GGTCCTGGTGATACTGGCTTTTTCCACGACTCCTTGTTTGACAACATGGG
ACCTTTTGCTTATCACTCTGCAGTCCATGATGGTTTTGGTTATTTGAAAA
CCAACCACAAGACTGGACCAGGGTACAACTACCTCAATAAGGGTATCTTT
GGTGATTGGAGTCCATTGGGAGGACAATACAGTGGATTAGAGTTTTGGAA
TGAAACATGCGAGAAATTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTG
TTATGAAATGAGTAAATCAGAAGTTTTGGAAAATGACCATTCATTTTACT
GGGGAACTCGTCAACAAATGTTATTCGGTAAAGTCATTTGTGATTGGCTA
GCTGAACACAAAAATGCACCAATGGATCCAATCTTTGGAACGCTCTTGAA
CCCAACTGGAGTGCACTGATCATGAAGCAGCAGATGGCCCTGGTCAGCCC
GAATCAGAACTTGGTCACATCCTTCACCAACTAGATCAAATCATCCGTAT
GGCACCCACAGTGACTGAATTCGAAATTACAGAACCAATCAAGAAAATTT
TGAAAATGATAGCTGAAATAAGAGTCTGTACTGAGGATTGTGAGAGCGTA
GATAAATGTTATGAACGACTTTTGGAAGATGCTGAGAAATTTGCAAAAAT
CTACCAAGAAAGAGGGTATGGGAGGCTATTTATCTTTCGAACAAGACAAA
ACTACTGCTTCTGTTGAAGAAGTTAAGAAATATTGCGAATCTGTTGTGTT
TGTACGTTTCAATGGTCAAACTAACAAATTCAAGGAAGAGTTGGTCCTGG
TGATACTGGCTTTTTCCACGACTCCTTGTTTGACAACATGGGACCTTTTG
CTTATCACTCTGCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACCAC
AAGACTGGACCAGGGTACAACTACCTCAATAAGGGTATCTTTGGTGATTG
GAGTCCATTGGGAGGACAATACAGTGGATTAGAGTTTTGGAATGAAACAT
GCGAGAAATTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGAAA
TGAGTAAATCAGAAGTTTTGGAAAATGACCATTCATTTTACTGGGGAACT
CGTCAACAAATGTTATTCGGTAAAGTCATTTGTGATTGGCTAGCTGAACA
CAAAAATGCACCAATGGATCCAATCTTTGGAACGCTCTTGAACCCAACTG
GAGTGCACTGATCATGAAGCAGCAGATGGCCCTGGTCAGCCCGAATCAGA
ACTTGGTCACATCCTTCACCAACTAGATCAAATCATCCGTATGGCACCCA
CAGTGACTGAATTCGAAATTACAGAACCAATCAAGAAAATTTTGAAAATG
ATAGCTGAAATAAGAGTCTGTACTGAGGATTGTGAGAGCGTAGATAAATG
TTATGAACGACTTTTGGAAGATGCTGAGAAATTTGCAAAAATCTACCAAG
AAAGAGGGTATGGGAGGCTATTTATCTTTCGAACAAGACAAAACTACTGC
TTCTGTTGAAGAAGTTAAGAAATATTGCGAATCTGTTGTGTTTGTACGTT
TCAATGGTCAAACTAACAAATTCAAGGAAGAGTTGGTCCTGGTGATACTG
GCTTTTTCCACGACTCCTTGTTTGACAACATGGGACCTTTTGCTTATCAC
TCTGCAGTCCATGATGGTTTTGGTTATTTGAAAACCAACCACAAGACTGG
ACCAGGGTACAACTACCTCAATAAGGGTATCTTTGGTGATTGGAGTCCAT
TGGGAGGACAATACAGTGGATTAGAGTTTTGGAATGAAACATGCGAGAAA
TTGGAGCCAGAAAAAGCTGACGAAAGTGTTTTTGTTATGAAATGAGTAAA
TCAGAAGTTTTGGAAAATGACCATTCATTTTACTGGGGAACTCGTCAACA
AATGTTATTCGGTAAAGTCATTTGTGATTGGCTAGCTGAACACAAAAATG
CACCAATGGATCCAATCTTTGGAACGCTCTTGAACCCAACTGGAGTGCAC
TGATCATGAAGCAGCAGATGGCCCTGGTCAGCCCGAATCAGAACTTGGTC
ACATCCTTCACCAACTAGATCAAATCATCCGTATGGCACCCACAGTGACT
GAATTCGAAATTACAGAACCAATCAAGAAAATTTTGAAAATGATAGCTGA
AATAAGAGTCTGTACTGAGGATTGTGAGAGCGTAGATAAATGTTATGAAC
GACTTTTGGAAGATGCTGAGAAATTTGCAAAAATCTACCAAGAAAGAGGG
TATGGGAGGCTATTTATCTTTCGAACAAGACAAAACTACTGCTTCTGTTG
AAGAAGTTAAGAAATATTGCGAATCTGTTGTGTTTGTACGTTTCAATGGT
CAAACTAACAAATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001457XLOC_001457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002697-exon-sc0000021-1575043694:519277..519405TCONS_00002697-exon-sc0000021-1575043694:519277..519405Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1575043694:518557..518703TCONS_00002697-exon-sc0000021-1575043694:518557..518703Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1575043694:518078..518333TCONS_00002697-exon-sc0000021-1575043694:518078..518333Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1575043694:517727..517876TCONS_00002697-exon-sc0000021-1575043694:517727..517876Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1575043694:516956..517419TCONS_00002697-exon-sc0000021-1575043694:516956..517419Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1510915933:519277..519405TCONS_00002697-exon-sc0000021-1510915933:519277..519405Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1510915933:518557..518703TCONS_00002697-exon-sc0000021-1510915933:518557..518703Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1510915933:518078..518333TCONS_00002697-exon-sc0000021-1510915933:518078..518333Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1510915933:517727..517876TCONS_00002697-exon-sc0000021-1510915933:517727..517876Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1510915933:516956..517419TCONS_00002697-exon-sc0000021-1510915933:516956..517419Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1491911889:519277..519405TCONS_00002697-exon-sc0000021-1491911889:519277..519405Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1491911889:518557..518703TCONS_00002697-exon-sc0000021-1491911889:518557..518703Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1491911889:518078..518333TCONS_00002697-exon-sc0000021-1491911889:518078..518333Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1491911889:517727..517876TCONS_00002697-exon-sc0000021-1491911889:517727..517876Clytia hemisphaericaexon
TCONS_00002697-exon-sc0000021-1491911889:516956..517419TCONS_00002697-exon-sc0000021-1491911889:516956..517419Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002697-proteinTCONS_00002697-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:516956..519405 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2415.82 2566.93 3338.25 3227.74 265.004 198.032 14.9931 21.647 2.96731 18.7727 2.14818 0.680849 0.201453 0.0261513 0 0 0 0 0.160997 0.0842361 1.72059 1.28565 396.622 350.286 0 0.0725618 13.8101 17.0657 119.183 147.761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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