TCONS_00002685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002685
Unique NameTCONS_00002685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002685 ID=TCONS_00002685|Name=TCONS_00002685|organism=Clytia hemisphaerica|type=transcript|length=692bp
CATTGATAGTTGAAGTTCCTGTCTCTAGAGATTTAATACTGGAACATTTA
CATCCTAGGAAACCCTAAACATAATAAAAAACATGGTTGCAACAGAAAAA
CTGAATCTTTTTTGTGTAGACGGTAGTGATATCTGTGCGAAAGCATTTGA
ATGGTATTGCTCAAATTTGCACAGAGATGGTGATACAATTGGTTTAGTAC
ATGTTTACCAAACTCCCGTTGTTCCTGTTCCACTAGGAGCAGGTGACAAT
ATGATATATGATGCTGGACTTTATGATCAATTACTTCAAGATGCATTCAA
AACAAGCCAACATATTCTGGCTAAATACAAAAGCAAATGCACTGATTTGA
ATataaaacatGAAGAGTTTTTCCAGCACATGAACGACTCAGTTGGTCAT
ACTATTTGTACCATTGCACatgaaaaaaatgccaaaaatattattatggG
TCAAAGAGGGTTAGGTGTTGTGCGCAGAACACTTCTTGGAAGCACAAGTG
ATTATGTTGTGCATCATTCACATCTACCAACAATCATTATACCGCATAAG
GAATGAAGATTgcattttatatttatttacaaatttattaCCAATACACT
TAttaatattattttaatgtacATTAGAATGAATTTTTAGGAATCCAGCA
TAATAATCATTTTACCAGTGGCCCAGGTCTATCAAAGTCGCC
Run BLAST on NCBI

transcript from alignment at sc0000021:320280..323769-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002685 ID=TCONS_00002685|Name=TCONS_00002685|organism=Clytia hemisphaerica|type=transcript|length=3490bp|location=Sequence derived from alignment at sc0000021:320280..323769- (Clytia hemisphaerica)
CATTGATAGTTGAAGTTCCTGTCTCTAGAGATTTAATACTGGAACATTTA
CATCCTAGGAAACCCTAAACGTGAGTATACATATACCAATAACTATTTTG
AAGCTGGATCAACCATTCAAGGGGAAGTTGATCATGAGGCTATCCTAGAA
AGTGTAAGAGTCGCTTGATAATGGACAAATTTATTGAAATCTGCAAAGGA
CGTAATGTAAACATATTAAAACAGCCTTACAGCATTACTTATCTTTTCAT
CATATCTGTATAAATCTGATCTGTACGTAATATCCTCTTTGCTTGATTTT
TTATTTCGATCCCTTCCTTCCTTGCCTTTAATTCTTGTTATTATTGAATC
TATTTCTCCAAGCGTTCATTGACTTCTCCCTTTTTTATTTTATTTGCAGT
CTTTTTTGAGCCTATCAAATTTAAAATCTTTCTTCACTTAGGGGAGACCA
ATTTAATTTGTTGTTCTACGGGCCTGACTGACCCTATTTTTGCTAAAATC
AAAAAAAAATGATAATATTGAATTTCCCACTACAATATATTTTAAAAACA
ATAGTTATTTGTAACAATTAAATTTGAATAAAGCTGAAAATTAATTCAAG
AAATTGAAAAATTTAGAAAATTAAGCATTTTATACATTTTATTATGATCT
AGATAAAGATCTGAGATAAAAAAAAGTGAATTTTTGATCCAGATATTTTT
TGGAAAATATTTTTGNCCATCGAAGATAAAAAAAAGTGAATTTTTGATCC
AGATATTTTTTGGAAAATATTTTCGGTATCTTACCAACCCTGATAAATGA
AAAATTACAGACCGACCCATATTTTTTTAACGATCTGCCTGTAGAACAAC
AAATTAAATTAATTTAAAAAATTAAAAACATTTTCACAACACACAAACCA
TGGCAGCCATTGTTGTACCGGGTGCACCAAAAAAAAGTATACAGGTTTGT
CGAGATATTGTGAGCTTCAGGATTTAAATTTTTTGTTCATTCTTTTTTTA
TCGTATAGAAGATGCTCTAACTTAAATTTTGAGCTATCATACATTAGGTT
TGAAAAAGTAGTTCGAAAGTTATTTAAAAAAAACTGACTTTTTTTAATGT
CAAAATTTCAAAAAATTATCAAAAACAGCGAGCAAACTTTTCTCTTGACA
CTTACCTTCTTTACACATAAAAATACCAAAAATTGCAACTATGTTCATCA
AAACTCATTACAGAATTTAAAAGTATGGTAAAGCAAGCTATTCCCATGTG
GGATAATATTTTTGGAAAAGCTGAAAAAAAGTTTTGGAAATCTCCAAGAG
AGGTTTTGATGTTATGTGTGTGCTATGTGAGAAAATTTTTTAAAAAATAT
ATCACCATTCCTCGACTAGTTGCTCAAAGAACTTGGGTCTGCATTGAGTT
TGCTCGCGTTGGAAATGTTCAGGACGGGCAAAAAAGATAGAAACTGTTGG
CAAAATATAAATAGGAAAAAAAAAACACAACAAAAAAACAATAAAATTGT
GTTTTTGCCGTTTTGTCTTATTTATACAGATTTATAGCGTGATTGCTGTT
TTTTAAATGATTTTTTGAAATTTCAACATGGAAAAAAAGTCAGTTTTTTT
TAAATAACTTTCGAACTACTTTTTCAAACCTAATGTATGATAGCTCAAAA
TTTAAGTTAGAGCATCCTCTTTCCGATAAAATATCACAATATCTCGACAA
ACCTATATACTTTTTTTGGTGCACCCGGTAGAAGAAATCAAATTTTTTTT
TTATATTTTATTTTGGGCAATTTTTTAGTATTTTTTATTTAATTTTTAAT
TTAATTTTAACTTTAGTTAATTGTTTATATGTTTCTGAGATTTTGGTTGG
TTGAAACCATTAAATACTTTTTCTATTTCTTTTTTGAGTTATTCTAAATT
GTTCCTGGATTCTTTTTTCTAATCATGCAATTTCTTGTTTTATGCAGTGA
ACGGAAAATAACAAATAAAATTTAACAATAGATAATAAAAAACATGGTTG
CAACAGAAAAACTGAATCTTTTTTGTGTAGACGGTAGTGATATCTGTGCG
AAAGCATTTGAATGTAAGTAAAAACAATTTCTTTATCAATTTTTGTAAAC
AATAAAGAGCTGTTATCTTTCTATCTAAAAACTAATTTAATCGGATTAAC
TTTCGCGACATTAAATTTTGCAAAATGAAAACACGTGAGATATCTGACTC
GCGAAATTAAATCTACCACAAAACTTTTTAAATTGCATTTTCGGCTGAGA
AACTAGTCCAAAGTTTCCATTTGTGGCAAAAAATGCGCTATTTTTCAGCT
GTTTTCAGGCTTATTCGCGAAATTAAATCCAAGCGAAATCTTTCAAAAAT
TAAATCCAGAAAATTTCGCGATTTTTTTCGCTTGCGAAATATTTAATCCA
ATTAACCAATGAAGTATGAATTTTTCTACAATTCTCTTACGCCAGGGTAT
TGCTCAAATTTGCACAGAGATGGTGATACAATTGGTTTAGTACATGTTTA
CCAAACTCCCGTTGTTCCTGTTCCACTAGGAGGTATGCTTCATTTCGTAT
TTGCTAATATCGGATAAGTTTTCATGTCACTTTCAACAAACTAAAAAGCG
ATTTTTTTGCTTCTTTGTTTTCATTTGCCATGCAATCTTTTTTCCAAAAT
CTTTTCCCTTTAGCAGGTGACAATATGATATATGATGCTGGACTTTATGA
TCAATTACTTCAAGATGCATTCAAAACAAGCCAACATATTCTGGCTAAAT
ACAAAAGCAAATGCACTGATTTGAATGTAAGATAGTTTGAAAGCTCCATT
TAGTTGATTTTTTTTCTCCAAAAATGATATGTACCACTGGAGAGTCTTCT
GATAACTTTTAAAATTTGGCATTAGTGTCAGTCTTTATCATTCAACAAGA
AAACTGATAAATTGTTATTGTAAGGCAAAAATAAATCCGGAAACCGGCCA
GGTGAAAAAAAAAAATTTGTCTGACCCGGTCTTCAATGATCTTAACTTAT
CAAGATTAGCAACAACAAAAAATTCCGCCCGGTCGCGTGAGAGCTTTCCT
TCACCTGCATTCCAGAAACACCACTTTTTTTTTATTTTCGCTTAACTGCA
ATTTTTTTTCTATACAGCAAATGAAATCATAAAAGCTCAATCTTTTTCAG
ATAAAACATGAAGAGTTTTTCCAGCACATGAACGACTCAGTTGGTCATAC
TATTTGTACCATTGCACATGAAAAAAATGCCAAAAATATTATTATGGGTC
AAAGAGGGTTAGGTGTTGTGCGCAGAACACTTCTTGGAAGCACAAGTGAT
TATGTTGTGCATCATTCACATCTACCAACAATCATTATACCGCATAAGGA
ATGAAGATTGCATTTTATATTTATTTACAAATTTATTACCAATACACTTA
TTAATATTATTTTAATGTACATTAGAATGAATTTTTAGGAATCCAGCATA
ATAATCATTTTACCAGTGGCCCAGGTCTATCAAAGTCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001448XLOC_001448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002685-exon-sc0000021-1575043694:323700..323769TCONS_00002685-exon-sc0000021-1575043694:323700..323769Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1575043694:321707..321788TCONS_00002685-exon-sc0000021-1575043694:321707..321788Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1575043694:321238..321324TCONS_00002685-exon-sc0000021-1575043694:321238..321324Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1575043694:320994..321106TCONS_00002685-exon-sc0000021-1575043694:320994..321106Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1575043694:320280..320619TCONS_00002685-exon-sc0000021-1575043694:320280..320619Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1510915933:323700..323769TCONS_00002685-exon-sc0000021-1510915933:323700..323769Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1510915933:321707..321788TCONS_00002685-exon-sc0000021-1510915933:321707..321788Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1510915933:321238..321324TCONS_00002685-exon-sc0000021-1510915933:321238..321324Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1510915933:320994..321106TCONS_00002685-exon-sc0000021-1510915933:320994..321106Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1510915933:320280..320619TCONS_00002685-exon-sc0000021-1510915933:320280..320619Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1491911889:323700..323769TCONS_00002685-exon-sc0000021-1491911889:323700..323769Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1491911889:321707..321788TCONS_00002685-exon-sc0000021-1491911889:321707..321788Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1491911889:321238..321324TCONS_00002685-exon-sc0000021-1491911889:321238..321324Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1491911889:320994..321106TCONS_00002685-exon-sc0000021-1491911889:320994..321106Clytia hemisphaericaexon
TCONS_00002685-exon-sc0000021-1491911889:320280..320619TCONS_00002685-exon-sc0000021-1491911889:320280..320619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:320280..323769 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.5392	11.9333	6.51033	6.59756	6.83929	5.8619	2.83159	2.27246	2.55141	2.98417	4.02257	4.94639	1.17251	2.15626	3.31842	3.99997	5.51019	3.22622	0.946126	2.13993	1.1263	0	10.4212	7.12205	1.96081	2.3658	1.03036	1.06869	3.08996	2.95145
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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