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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002685 ID=TCONS_00002685|Name=TCONS_00002685|organism=Clytia hemisphaerica|type=transcript|length=692bp CATTGATAGTTGAAGTTCCTGTCTCTAGAGATTTAATACTGGAACATTTA CATCCTAGGAAACCCTAAACATAATAAAAAACATGGTTGCAACAGAAAAA CTGAATCTTTTTTGTGTAGACGGTAGTGATATCTGTGCGAAAGCATTTGA ATGGTATTGCTCAAATTTGCACAGAGATGGTGATACAATTGGTTTAGTAC ATGTTTACCAAACTCCCGTTGTTCCTGTTCCACTAGGAGCAGGTGACAAT ATGATATATGATGCTGGACTTTATGATCAATTACTTCAAGATGCATTCAA AACAAGCCAACATATTCTGGCTAAATACAAAAGCAAATGCACTGATTTGA ATataaaacatGAAGAGTTTTTCCAGCACATGAACGACTCAGTTGGTCAT ACTATTTGTACCATTGCACatgaaaaaaatgccaaaaatattattatggG TCAAAGAGGGTTAGGTGTTGTGCGCAGAACACTTCTTGGAAGCACAAGTG ATTATGTTGTGCATCATTCACATCTACCAACAATCATTATACCGCATAAG GAATGAAGATTgcattttatatttatttacaaatttattaCCAATACACT TAttaatattattttaatgtacATTAGAATGAATTTTTAGGAATCCAGCA TAATAATCATTTTACCAGTGGCCCAGGTCTATCAAAGTCGCC Run BLAST on NCBI transcript from alignment at sc0000021:320280..323769- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002685 ID=TCONS_00002685|Name=TCONS_00002685|organism=Clytia hemisphaerica|type=transcript|length=3490bp|location=Sequence derived from alignment at sc0000021:320280..323769- (Clytia hemisphaerica) CATTGATAGTTGAAGTTCCTGTCTCTAGAGATTTAATACTGGAACATTTA
CATCCTAGGAAACCCTAAACGTGAGTATACATATACCAATAACTATTTTG
AAGCTGGATCAACCATTCAAGGGGAAGTTGATCATGAGGCTATCCTAGAA
AGTGTAAGAGTCGCTTGATAATGGACAAATTTATTGAAATCTGCAAAGGA
CGTAATGTAAACATATTAAAACAGCCTTACAGCATTACTTATCTTTTCAT
CATATCTGTATAAATCTGATCTGTACGTAATATCCTCTTTGCTTGATTTT
TTATTTCGATCCCTTCCTTCCTTGCCTTTAATTCTTGTTATTATTGAATC
TATTTCTCCAAGCGTTCATTGACTTCTCCCTTTTTTATTTTATTTGCAGT
CTTTTTTGAGCCTATCAAATTTAAAATCTTTCTTCACTTAGGGGAGACCA
ATTTAATTTGTTGTTCTACGGGCCTGACTGACCCTATTTTTGCTAAAATC
AAAAAAAAATGATAATATTGAATTTCCCACTACAATATATTTTAAAAACA
ATAGTTATTTGTAACAATTAAATTTGAATAAAGCTGAAAATTAATTCAAG
AAATTGAAAAATTTAGAAAATTAAGCATTTTATACATTTTATTATGATCT
AGATAAAGATCTGAGATAAAAAAAAGTGAATTTTTGATCCAGATATTTTT
TGGAAAATATTTTTGNCCATCGAAGATAAAAAAAAGTGAATTTTTGATCC
AGATATTTTTTGGAAAATATTTTCGGTATCTTACCAACCCTGATAAATGA
AAAATTACAGACCGACCCATATTTTTTTAACGATCTGCCTGTAGAACAAC
AAATTAAATTAATTTAAAAAATTAAAAACATTTTCACAACACACAAACCA
TGGCAGCCATTGTTGTACCGGGTGCACCAAAAAAAAGTATACAGGTTTGT
CGAGATATTGTGAGCTTCAGGATTTAAATTTTTTGTTCATTCTTTTTTTA
TCGTATAGAAGATGCTCTAACTTAAATTTTGAGCTATCATACATTAGGTT
TGAAAAAGTAGTTCGAAAGTTATTTAAAAAAAACTGACTTTTTTTAATGT
CAAAATTTCAAAAAATTATCAAAAACAGCGAGCAAACTTTTCTCTTGACA
CTTACCTTCTTTACACATAAAAATACCAAAAATTGCAACTATGTTCATCA
AAACTCATTACAGAATTTAAAAGTATGGTAAAGCAAGCTATTCCCATGTG
GGATAATATTTTTGGAAAAGCTGAAAAAAAGTTTTGGAAATCTCCAAGAG
AGGTTTTGATGTTATGTGTGTGCTATGTGAGAAAATTTTTTAAAAAATAT
ATCACCATTCCTCGACTAGTTGCTCAAAGAACTTGGGTCTGCATTGAGTT
TGCTCGCGTTGGAAATGTTCAGGACGGGCAAAAAAGATAGAAACTGTTGG
CAAAATATAAATAGGAAAAAAAAAACACAACAAAAAAACAATAAAATTGT
GTTTTTGCCGTTTTGTCTTATTTATACAGATTTATAGCGTGATTGCTGTT
TTTTAAATGATTTTTTGAAATTTCAACATGGAAAAAAAGTCAGTTTTTTT
TAAATAACTTTCGAACTACTTTTTCAAACCTAATGTATGATAGCTCAAAA
TTTAAGTTAGAGCATCCTCTTTCCGATAAAATATCACAATATCTCGACAA
ACCTATATACTTTTTTTGGTGCACCCGGTAGAAGAAATCAAATTTTTTTT
TTATATTTTATTTTGGGCAATTTTTTAGTATTTTTTATTTAATTTTTAAT
TTAATTTTAACTTTAGTTAATTGTTTATATGTTTCTGAGATTTTGGTTGG
TTGAAACCATTAAATACTTTTTCTATTTCTTTTTTGAGTTATTCTAAATT
GTTCCTGGATTCTTTTTTCTAATCATGCAATTTCTTGTTTTATGCAGTGA
ACGGAAAATAACAAATAAAATTTAACAATAGATAATAAAAAACATGGTTG
CAACAGAAAAACTGAATCTTTTTTGTGTAGACGGTAGTGATATCTGTGCG
AAAGCATTTGAATGTAAGTAAAAACAATTTCTTTATCAATTTTTGTAAAC
AATAAAGAGCTGTTATCTTTCTATCTAAAAACTAATTTAATCGGATTAAC
TTTCGCGACATTAAATTTTGCAAAATGAAAACACGTGAGATATCTGACTC
GCGAAATTAAATCTACCACAAAACTTTTTAAATTGCATTTTCGGCTGAGA
AACTAGTCCAAAGTTTCCATTTGTGGCAAAAAATGCGCTATTTTTCAGCT
GTTTTCAGGCTTATTCGCGAAATTAAATCCAAGCGAAATCTTTCAAAAAT
TAAATCCAGAAAATTTCGCGATTTTTTTCGCTTGCGAAATATTTAATCCA
ATTAACCAATGAAGTATGAATTTTTCTACAATTCTCTTACGCCAGGGTAT
TGCTCAAATTTGCACAGAGATGGTGATACAATTGGTTTAGTACATGTTTA
CCAAACTCCCGTTGTTCCTGTTCCACTAGGAGGTATGCTTCATTTCGTAT
TTGCTAATATCGGATAAGTTTTCATGTCACTTTCAACAAACTAAAAAGCG
ATTTTTTTGCTTCTTTGTTTTCATTTGCCATGCAATCTTTTTTCCAAAAT
CTTTTCCCTTTAGCAGGTGACAATATGATATATGATGCTGGACTTTATGA
TCAATTACTTCAAGATGCATTCAAAACAAGCCAACATATTCTGGCTAAAT
ACAAAAGCAAATGCACTGATTTGAATGTAAGATAGTTTGAAAGCTCCATT
TAGTTGATTTTTTTTCTCCAAAAATGATATGTACCACTGGAGAGTCTTCT
GATAACTTTTAAAATTTGGCATTAGTGTCAGTCTTTATCATTCAACAAGA
AAACTGATAAATTGTTATTGTAAGGCAAAAATAAATCCGGAAACCGGCCA
GGTGAAAAAAAAAAATTTGTCTGACCCGGTCTTCAATGATCTTAACTTAT
CAAGATTAGCAACAACAAAAAATTCCGCCCGGTCGCGTGAGAGCTTTCCT
TCACCTGCATTCCAGAAACACCACTTTTTTTTTATTTTCGCTTAACTGCA
ATTTTTTTTCTATACAGCAAATGAAATCATAAAAGCTCAATCTTTTTCAG
ATAAAACATGAAGAGTTTTTCCAGCACATGAACGACTCAGTTGGTCATAC
TATTTGTACCATTGCACATGAAAAAAATGCCAAAAATATTATTATGGGTC
AAAGAGGGTTAGGTGTTGTGCGCAGAACACTTCTTGGAAGCACAAGTGAT
TATGTTGTGCATCATTCACATCTACCAACAATCATTATACCGCATAAGGA
ATGAAGATTGCATTTTATATTTATTTACAAATTTATTACCAATACACTTA
TTAATATTATTTTAATGTACATTAGAATGAATTTTTAGGAATCCAGCATA
ATAATCATTTTACCAGTGGCCCAGGTCTATCAAAGTCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002685-exon-sc0000021-1575043694:323700..323769 | TCONS_00002685-exon-sc0000021-1575043694:323700..323769 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1575043694:321707..321788 | TCONS_00002685-exon-sc0000021-1575043694:321707..321788 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1575043694:321238..321324 | TCONS_00002685-exon-sc0000021-1575043694:321238..321324 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1575043694:320994..321106 | TCONS_00002685-exon-sc0000021-1575043694:320994..321106 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1575043694:320280..320619 | TCONS_00002685-exon-sc0000021-1575043694:320280..320619 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1510915933:323700..323769 | TCONS_00002685-exon-sc0000021-1510915933:323700..323769 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1510915933:321707..321788 | TCONS_00002685-exon-sc0000021-1510915933:321707..321788 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1510915933:321238..321324 | TCONS_00002685-exon-sc0000021-1510915933:321238..321324 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1510915933:320994..321106 | TCONS_00002685-exon-sc0000021-1510915933:320994..321106 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1510915933:320280..320619 | TCONS_00002685-exon-sc0000021-1510915933:320280..320619 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1491911889:323700..323769 | TCONS_00002685-exon-sc0000021-1491911889:323700..323769 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1491911889:321707..321788 | TCONS_00002685-exon-sc0000021-1491911889:321707..321788 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1491911889:321238..321324 | TCONS_00002685-exon-sc0000021-1491911889:321238..321324 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1491911889:320994..321106 | TCONS_00002685-exon-sc0000021-1491911889:320994..321106 | Clytia hemisphaerica | exon |
TCONS_00002685-exon-sc0000021-1491911889:320280..320619 | TCONS_00002685-exon-sc0000021-1491911889:320280..320619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000021 | supercontig | sc0000021:320280..323769 - |
Blast
The following BLAST results are available for this feature:
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