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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002671 ID=TCONS_00002671|Name=TCONS_00002671|organism=Clytia hemisphaerica|type=transcript|length=3890bpRun BLAST on NCBI protein sequence of TCONS_00002671-protein >TCONS_00002671-protein ID=TCONS_00002671-protein|Name=TCONS_00002671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp MPKGHFDCGKVTSRKILYIIALTSVFWFSMNILLLIANNQAAKDSLNSLTRun BLAST on NCBI transcript from alignment at sc0000021:272407..286710- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002671 ID=TCONS_00002671|Name=TCONS_00002671|organism=Clytia hemisphaerica|type=transcript|length=14304bp|location=Sequence derived from alignment at sc0000021:272407..286710- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000021:272407..286710- >TCONS_00002671 ID=TCONS_00002671|Name=TCONS_00002671|organism=Clytia hemisphaerica|type=CDS|length=19110bp|location=Sequence derived from alignment at sc0000021:272407..286710- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00002671 vs. Swiss-Prot (Human)
Match: GLT13 (Polypeptide N-acetylgalactosaminyltransferase 13 OS=Homo sapiens GN=GALNT13 PE=2 SV=2) HSP 1 Score: 469.159 bits (1206), Expect = 2.717e-150 Identity = 249/509 (48.92%), Postives = 327/509 (64.24%), Query Frame = 1
Query: 511 QPGKGEMGVAAYLDTDAEKKYAEAIFKNHSFNSVLSDKISLDRTIKDVRGAECAKQHSSYPSNLPTASVVICFHNEAKSVLLRTVHSVINRTPPDLLKEIVIVDDKSEYANLKKPIDDHVKQLSNKVVVVRNAKRSGLIKSRLAGAEKATGDVIVFLDSHCETTPGWVEPLLARIAEDRSNVVVPIIEVLNADTLEYSAASNPDQRGGFGWDLMYKWKPIPLEEQKLRKSHIDV-IRTPAMAGGLFAIHRQYFYDMGSYDEEMDIWGGENLEMSFRIWMCGGRVEIIPCSRVGHIFRKYTSPYKFPDGVEKTLAKNLNRLAEVWMDDYKELYYNKRPHSKGMPFGDVSGRRRLRNKLGCKSFKWYLDNIYPDAPILDPYPPAKGEIRNPSSGVCLDTMGTVKGDEAVKRKVGMYPCHSQGGNQHFIFTKKGEVQFDEDYCFDVSS-NSPGANIELWKCHGFGGNQKFIHNGPVGEIRHEPTGQCVDRGNSGATLV-IMKPCNGAANQKW 2028
Q G GEMG A + D ++K E +FK + FN + SD I+L+R++ DVR C + YP LP SVVI FHNEA S LLRTV+SVINR+P LL E+++VDD SE LK ++++VK L V ++R +RSGLI++RL GA + G VI FLD+HCE T GW+EPLLARI EDR VV PII+V++ DT EY A S+ GGF W L ++W P+P E RK + +RTP MAGGLF+I R YF ++G+YD MDIWGGENLEMSFRIW CGG +EI+ CS VGH+FRK T PY FP G + KN RLAEVWMD++K+ +Y P + +GDVS R+ LR L CK F WYL+NIYPD+ I Y + GEIRN + CLD MG + + KVG++ CH GGNQ F +T E++ D D C DVS N P + + KCH GNQ + ++ +RH + QC+D + +V M+ C+G+ +Q+W
Sbjct: 54 QEGPGEMGKAVLIPKDDQEKMKE-LFKINQFNLMASDLIALNRSLPDVRLEGCKTK--VYPDELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASERDFLKLTLENYVKNLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWLEPLLARIKEDRKTVVCPIIDVISDDTFEYMAGSDMTY-GGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLEIVTCSHVGHVFRKAT-PYTFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDYGDVSVRKTLRENLKCKPFSWYLENIYPDSQIPRRY-YSLGEIRNVETNQCLDNMGRKENE-----KVGIFNCHGMGGNQVFSYTADKEIRTD-DLCLDVSRLNGP---VIMLKCHHMRGNQLWEYDAERLTLRHVNSNQCLDEPSEEDKMVPTMQDCSGSRSQQW 547 The following BLAST results are available for this feature:
BLAST of TCONS_00002671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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