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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002660 ID=TCONS_00002660|Name=TCONS_00002660|organism=Clytia hemisphaerica|type=transcript|length=2255bp
AGATAATATCGGCTTAGCATATGCAAGGTGGTCGACAAagtgaatatttt
ttttgccaaTAAATTTTAGAACACGGAAAGACAATAACAAAAAAGTAAAG
GATAAATTAATTTTTAGAATCGCAACAAAGTTTTTTGCAGCAATTATTAN
AAGTAAAggataaatttaatttttagaatCGCAACAAAGTTTTTGCAGCA
ATtattaatcaattttaattttccaTTCACAACCACATCACGAAGGATGA
ATCGccagattttgatatttttgacacTGGTGACATGTGTTGTTCTGGTG
AAGTCACGGTCATCGAGGTTTGGCGCCAAAAAGCGCGAATGGCCGatcaA
ATTATGTACAGCAGATGAAGACTGTGAAGGAGGGTGTTGCAAAGGATTGT
TTTGTTTTCGATATCTCACTGAAGACGAACGCTGTCTCTTTGGGCATCAT
TTGAAAGTTGGGTGTGGTTGTGAAGCCGGGTTATCATGCGAACGAAAGAA
ATTTTCCTACTCCTGTCAAAAACCTGAAGATGAAGACGAAAGTGAAGATA
ATTTCAACCGAGAATTGGAGGAAATTTTAATGAGAGCTGAAACACGACGT
GCTGTGGCGGATGAAGGTGAAAATGCTGACAATGCAAGTATTGACAATGA
AACAAAGAGAAATGTATCACAATTTTAAGAAGTcataatatcatgaatta
tgAAGGCTCAAATGTTTTCATTATCCTGCCTAAAAAAACCGGTCCAATTG
TTTCACAAATTGCAGTTCACAAGTTCTTACTTTTAAGATTCTAAAGTTTA
TTgtaaaaagctttgtaaatTCATTCTTGTAAGTCTTCTCAAAACCAATA
CTACTTaacctacctacctacctacctacctacctagGTCGGGCGCCAGT
AGCTCATACCCAATGAATTCCTCTTTTCTAGCTATATAATTATATAgaac
tttaaaatcaaaatccttTGGTGATCGacctaaaacattttttgacttgt
aatcaggcccggcggaacagccgttaaagtggggaggctgaaggctcaaa
atgagataaaattcgctaggaatttgagaaaaaaatttgctcatttgctc
aaaagtagGGACGCTGAAGTCTTCCCaatctccccgcttccgccgggcct
gctTGTACTGTAGTACAAAAATTGAAGTAActgtatgaatttttttttag
taTGATCAACGAAGCAAAGGATTTAATTTCTTTTCGTTAAAAAATCATGA
TAGATGTAGAATACAAactaatatatttttgatttaaaaaaatccctTTA
TATCATTGGGATGAACGGAGAGATAAATTCGCTGAATCtcaatttgctta
aaatttactctttcaattttttattttccagtgTCAATGTGATTAAGgga
ttttaaaggttttatttttacatcagTCAGtaagtgttcccatttcatat
cagagacatatttcatatcaggacagtgtctgtctattgttatattgtgt
tgatataagcaaaaaaatgtttttcttttcctctttttgaccaatcttgc
tgcACATATGTGTCAATTAAATATCAAAAAGcgtttaaattaaatttgat
gagtaagcaaacgatatcagttttatttaaaaacaaaacctttaaaaaca
aaacttttaaatgatTTGACGTAAAAGTTGggtaaaattttcaatgtttc
aatttaatGTGATGGGCTAACTGTTTTAAATTAGTTTATTTTGTTGTCAG
AACAGTTGTGTTATGGGTACAGTGGATAGTCTCTttaacttgaacaagtt
ttctggtcccttcagttaacaatgcctataaaccttactctatagctcga
aatttccataattcgaacacatttgtgttccccgtgcgtgttcgattTAT
AGAAACTCCACTGTATTATCCATagatttaaattcaaaatttgtgatttt
aagaagattaatattgattatttcaaaaatcGACCATACTGATTGTAACT
TCGAGTAAAATATAGTTTACACACGTTGATTTTGGACTGCGACACAATAT
TGaacaattttacatttttttgctcaagatGTTGATACGACCTTTACCAA
ATACGTTTTCCAGAAGATGAACGCGCATAAACTATTTAATGTTTAATTTA
TGTAAATTCTTTTAAGTTTATTTATcaagttgaagaaaaaaataaaacag
ttgggaatttgaaaactttgttattttttaattttttgtcgaAGTGAAAT
TTCAT Run BLAST on NCBI protein sequence of TCONS_00002660-protein >TCONS_00002660-protein ID=TCONS_00002660-protein|Name=TCONS_00002660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MNRQILIFLTLVTCVVLVKSRSSRFGAKKREWPIKLCTADEDCEGGCCKG
LFCFRYLTEDERCLFGHHLKVGCGCEAGLSCERKKFSYSCQKPEDEDESE
DNFNRELEEILMRAETRRAVADEGENADNASIDNETKRNVSQF Run BLAST on NCBI transcript from alignment at sc0000021:144767..149996- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002660 ID=TCONS_00002660|Name=TCONS_00002660|organism=Clytia hemisphaerica|type=transcript|length=5230bp|location=Sequence derived from alignment at sc0000021:144767..149996- (Clytia hemisphaerica)
AGATAATATCGGCTTAGCATATGCAAGGTGGTCGACAAAGTGAATATTTT
TTTTGCCAATAAATTTTAGAACACGGAAAGACAATAACAAAAAAGTAAAG
GATAAATTAATTTTTAGAATCGCAACAAAGTTTTTTGCAGCAATTATTAN
AAGTAAAGGATAAATTTAATTTTTAGAATCGCAACAAAGTTTTTGCAGCA
ATTATTAATCAATTTTAATTTTCCATTCACAACCACATCACGAAGGATGA
ATCGCCAGATTTTGATATTTTTGACACTGGTGACATGTGTTGTTCTGGTG
AAGTCACGGTCATCGAGGTTTGGCGCCAAAAAGCGCGAATGGCCGGTAAG
CCATATTGTTTGAAACGCTCCTGTCTAAGTGTCCAAGTAGGTGGGAAACA
AACTGTACTGTCTAGATTGGGTCTTTTTTCTGCCTAGGGGCCGTCCACAT
AGTACGTACGCACTAATAGTTCTCAAAAGCGTATGTTTGCGTACAGGGGG
AGGGGAGGGGTCAAAGGAAAATGTACGTATGCAGATTTTATAACGTCAAA
ATCAGTTTTTGACCGATATCTTCAGATTGACTTAATGTAAATTTTTGACC
CAGCACTTTTCGAAATCCTCTCGTTGATACGATTGTTTTGAGCTATATAT
GAGAGTTAAGGAATAATGGGAAGCGGTGCGCGCCACGCAAAATATATTTG
GGACATGCCTTAACTCACCCGAGCATTTGCGTACGCTTGCGTACAGGGGG
GAGGGGGTACTCGATTTTCGACATTTTAGTGCGTACGTACTATGTGGACG
GCCCCCTATGTTAAATTGGCTATTTTCATCAGTCTTTACAGTCCATATAG
CTTTAGCAATAGCAAGATATCTCATTTTTGGATAGGAATTATTTTGTTTG
GTAATGAAAGGTGTAATTTTGAACCGTGTTTAATTATTTAAGGCTTAGTT
TTTTCCCTATTCAATTTGAAATGAAACAAGCGATGTAATAGGAATAACAC
AGTACTTTGAAAAAACAATTCTTGCAATTCAGCTTTTGCTTGATATATCA
GAGCTATGGATAGAGCGATATAACACCCCTGTGTCACAGACCCACTGGGA
GACAAAGCCCCACCGAAAAATTTGGCAGAAATTTCGTCCCCGGTGGGAAA
ACACTCTGGAATTTCAGCTCCACTGGGAAAATGACTTTGATTTCATCGCC
ATTCGAAATTCAATGTTTAAAAATTGCACTCCAAAAGCGTCCCCGCTGGA
TTTTTTAATAGGAACAATAGAATTTTTTTAACCCCATCGGAATTTCAATA
GGAAAAATAGTTTCACAAGGGCTGTGAGACAGGGGTGTAATATCCCATAG
TTGATAGTTGTTAATTTTCCGATGTGATAGGCCAATACATATCATAGTGA
AAGTTATTTAGTCAATATGAATAGTAAGACTGGGATATTAGAATTTACCG
TTGTCAACATAAAATTAGGTGTCTTTATCCCTTTTTCAGTGAGTTTGGAT
TCAACCTGGTTAGATATTCAAATCAGAGTTTGATTAGTAGCTATCAGCAC
ATAGCGAACACTTTTATTTAATTTCAAATAATCACCTCCAGCAGTGCATC
GGAATAATTAATTTAGTTTTAAATTTAAATATATTAATAATCATCAATAA
TTTAGCTGCTTTTATATATCCTATCAAAATCAAAATCAGACCTCAAATCA
AACTCTAGAAATATATACTAATATTTTAAGCCTTTTGATCACATCGGCGG
GGTACTGTCTCCTTGGTTCCCTCGGATTATTCGATTGTGTCATGACCAAA
ATTTATTTATTTAAAGTTTTTAATGGTTTAATAAAACGGTTAAATACATC
AATAAAATATTCAAATTTTGGTGGTCTTTCCATTCTCAAGTATAAAATTG
TTCTCTGGATTTATCTTTTTGCTGACTTTAGATAAGATAATTCATAAAAT
ATATAAAACATGCTCTCCCAGAAAAACATAATTTGGTTCATTAATATCGC
GATTTAAAACTAACTGCCAAAATCCAAATGAAAGCAGGTCTAAACGTCAA
AAAAATTCTCTTACACCGTGTGAAAAAATACATATCCGAAATCTTTATAA
CACCCCTTTCTTCACAGAACCAAATAGGATTTTTTTCAGCCATTAGGGAT
ATAAGAATATGTACTAGTTATTGCATGACTTCGAGTGCATTTTTCCGTAA
TTTTTCTCGGTAAAATCTCGGAACAAGTAAAATATCGAGTATTGCACGAG
AAGTCCACAAAGCCTTAGGGCTCTGACCATAGTCAGAAAACAGAAAATTG
ATTTTAGTATCTGAACATAAAAGTTATGTTTTAAATTCTTTAACACTTTT
AACAAAGAATTGCCTTTATAAATTGCTTTTTAATCAAACNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTATGTTGCATCACCTTCTTTTATAAAAA
GTGCTAAGTTTTAATGGGTAATTAACCTTTTTGTTTCGAACTTTTTTCAA
ACTGTCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTAAA
AAGATGTGTCAAAAGTTATGACTGTTTTTTTAAGCAAAATCCAGATGCAA
AATTGATGAAAAACCACTATTTTGAAGATTTTGAGACAAAGAAGCATTTA
CAAAAATTTCCGCAAAAATTTTTATTGTTCGGTAAAAGATACACCATCTA
CTGCGAAAAAATTTTCAAAATGTTTTATCTTAGCCGAAACTAAGCTCTTC
AAAGTTGAAATACTCTCGCAAAAGTCTTCATTTTCTTCTTCATCAAATTT
TTTCAATGCAATTTTTGAGTTTTCAGATTCAGGAATAGTTTGTCTAACAG
AAAATGTATAACATGCCATAGTTGTATTGGTTACATCAGTCAGAAAATTT
TAAACACGGCAATTATGAAAAATTCACTATGGTCAGAGCCCTTAAGTTAA
CATGTTAACATGTTCTTAACTTGTTCTTAATATTTAATATTTTGTTGCAT
TACTTAGGATAGAAACATGTATTCCACTTTTTTTCTTTCAGATCAAATTA
TGTACAGCAGATGAAGACTGTGAAGGAGGGTGTTGCAAAGGATTGTTTTG
TTTTCGATATCTCACTGAAGACGAACGCTGTCTCTTTGGGGTAAGTTGGA
CCTAATCCAATAAAATTAGGTTTTTTTGAAAAAATAATATATAGCAAGCT
GGAATTTTGTCCAGCTTTTTGTTGCCTTGGAAACAAAACAAATCCTATCA
ATCTTTATTTGTATTTCAGCATCATTTGAAAGTTGGGTGTGGTTGTGAAG
CCGGGTTATCATGCGAACGAAAGAAATTTTCCTACTCCTGTCAAAAACCT
GAAGATGAAGACGAAAGTGAAGATAATTTCAACCGAGAATTGGAGGAAAT
TTTAATGAGAGCTGAAACACGACGTGCTGTGGCGGATGAAGGTGAAAATG
CTGACAATGCAAGTATTGACAATGAAACAAAGAGAAATGTATCACAATTT
TAAGAAGTCATAATATCATGAATTATGAAGGCTCAAATGTTTTCATTATC
CTGCCTAAAAAAACCGGTCCAATTGTTTCACAAATTGCAGTTCACAAGTT
CTTACTTTTAAGATTCTAAAGTTTATTGTAAAAAGCTTTGTAAATTCATT
CTTGTAAGTCTTCTCAAAACCAATACTACTTAACCTACCTACCTACCTAC
CTACCTACCTAGGTCGGGCGCCAGTAGCTCATACCCAATGAATTCCTCTT
TTCTAGCTATATAATTATATAGAACTTTAAAATCAAAATCCTTTGGTGAT
CGACCTAAAACATTTTTTGACTTGTAATCAGGCCCGGCGGAACAGCCGTT
AAAGTGGGGAGGCTGAAGGCTCAAAATGAGATAAAATTCGCTAGGAATTT
GAGAAAAAAATTTGCTCATTTGCTCAAAAGTAGGGACGCTGAAGTCTTCC
CAATCTCCCCGCTTCCGCCGGGCCTGCTTGTACTGTAGTACAAAAATTGA
AGTAACTGTATGAATTTTTTTTTAGTATGATCAACGAAGCAAAGGATTTA
ATTTCTTTTCGTTAAAAAATCATGATAGATGTAGAATACAAACTAATATA
TTTTTGATTTAAAAAAATCCCTTTATATCATTGGGATGAACGGAGAGATA
AATTCGCTGAATCTCAATTTGCTTAAAATTTACTCTTTCAATTTTTTATT
TTCCAGTGTCAATGTGATTAAGGGATTTTAAAGGTTTTATTTTTACATCA
GTCAGTAAGTGTTCCCATTTCATATCAGAGACATATTTCATATCAGGACA
GTGTCTGTCTATTGTTATATTGTGTTGATATAAGCAAAAAAATGTTTTTC
TTTTCCTCTTTTTGACCAATCTTGCTGCACATATGTGTCAATTAAATATC
AAAAAGCGTTTAAATTAAATTTGATGAGTAAGCAAACGATATCAGTTTTA
TTTAAAAACAAAACCTTTAAAAACAAAACTTTTAAATGATTTGACGTAAA
AGTTGGGTAAAATTTTCAATGTTTCAATTTAATGTGATGGGCTAACTGTT
TTAAATTAGTTTATTTTGTTGTCAGAACAGTTGTGTTATGGGTACAGTGG
ATAGTCTCTTTAACTTGAACAAGTTTTCTGGTCCCTTCAGTTAACAATGC
CTATAAACCTTACTCTATAGCTCGAAATTTCCATAATTCGAACACATTTG
TGTTCCCCGTGCGTGTTCGATTTATAGAAACTCCACTGTATTATCCATAG
ATTTAAATTCAAAATTTGTGATTTTAAGAAGATTAATATTGATTATTTCA
AAAATCGACCATACTGATTGTAACTTCGAGTAAAATATAGTTTACACACG
TTGATTTTGGACTGCGACACAATATTGAACAATTTTACATTTTTTTGCTC
AAGATGTTGATACGACCTTTACCAAATACGTTTTCCAGAAGATGAACGCG
CATAAACTATTTAATGTTTAATTTATGTAAATTCTTTTAAGTTTATTTAT
CAAGTTGAAGAAAAAAATAAAACAGTTGGGAATTTGAAAACTTTGTTATT
TTTTAATTTTTTGTCGAAGTGAAATTTCAT Coding sequence (CDS) from alignment at sc0000021:144767..149996- >TCONS_00002660 ID=TCONS_00002660|Name=TCONS_00002660|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000021:144767..149996- (Clytia hemisphaerica)
CATCATTTGAAAGTTGGGTGTGGTTGTGAAGCCGGGTTATCATGCGAACG
AAAGAAATTTTCCTACTCCTGTCAAAAACCTGAAGATGAAGACGAAAGTG
AAGATAATTTCAACCGAGAATTGGAGGAAATTTTAATGAGAGCTGAAACA
CGACGTGCTGTGGCGGATGAAGGTGAAAATGCTGACAATGCAAGTATTGA
CAATGAAACAAAGAGAAATGTATCACAATTTTAAATCAAATTATGTACAG
CAGATGAAGACTGTGAAGGAGGGTGTTGCAAAGGATTGTTTTGTTTTCGA
TATCTCACTGAAGACGAACGCTGTCTCTTTGGGATGAATCGCCAGATTTT
GATATTTTTGACACTGGTGACATGTGTTGTTCTGGTGAAGTCACGGTCAT
CGAGGTTTGGCGCCAAAAAGCGCGAATGGCCGCATCATTTGAAAGTTGGG
TGTGGTTGTGAAGCCGGGTTATCATGCGAACGAAAGAAATTTTCCTACTC
CTGTCAAAAACCTGAAGATGAAGACGAAAGTGAAGATAATTTCAACCGAG
AATTGGAGGAAATTTTAATGAGAGCTGAAACACGACGTGCTGTGGCGGAT
GAAGGTGAAAATGCTGACAATGCAAGTATTGACAATGAAACAAAGAGAAA
TGTATCACAATTTTAAATCAAATTATGTACAGCAGATGAAGACTGTGAAG
GAGGGTGTTGCAAAGGATTGTTTTGTTTTCGATATCTCACTGAAGACGAA
CGCTGTCTCTTTGGGATGAATCGCCAGATTTTGATATTTTTGACACTGGT
GACATGTGTTGTTCTGGTGAAGTCACGGTCATCGAGGTTTGGCGCCAAAA
AGCGCGAATGGCCGCATCATTTGAAAGTTGGGTGTGGTTGTGAAGCCGGG
TTATCATGCGAACGAAAGAAATTTTCCTACTCCTGTCAAAAACCTGAAGA
TGAAGACGAAAGTGAAGATAATTTCAACCGAGAATTGGAGGAAATTTTAA
TGAGAGCTGAAACACGACGTGCTGTGGCGGATGAAGGTGAAAATGCTGAC
AATGCAAGTATTGACAATGAAACAAAGAGAAATGTATCACAATTTTAAAT
CAAATTATGTACAGCAGATGAAGACTGTGAAGGAGGGTGTTGCAAAGGAT
TGTTTTGTTTTCGATATCTCACTGAAGACGAACGCTGTCTCTTTGGGATG
AATCGCCAGATTTTGATATTTTTGACACTGGTGACATGTGTTGTTCTGGT
GAAGTCACGGTCATCGAGGTTTGGCGCCAAAAAGCGCGAATGGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002660-exon-sc0000021-1575043694:149652..149996 | TCONS_00002660-exon-sc0000021-1575043694:149652..149996 | Clytia hemisphaerica | exon |
| TCONS_00002660-exon-sc0000021-1575043694:146707..146805 | TCONS_00002660-exon-sc0000021-1575043694:146707..146805 | Clytia hemisphaerica | exon |
| TCONS_00002660-exon-sc0000021-1575043694:144767..146577 | TCONS_00002660-exon-sc0000021-1575043694:144767..146577 | Clytia hemisphaerica | exon |
| TCONS_00002660-exon-sc0000021-1510915933:149652..149996 | TCONS_00002660-exon-sc0000021-1510915933:149652..149996 | Clytia hemisphaerica | exon |
| TCONS_00002660-exon-sc0000021-1510915933:146707..146805 | TCONS_00002660-exon-sc0000021-1510915933:146707..146805 | Clytia hemisphaerica | exon |
| TCONS_00002660-exon-sc0000021-1510915933:144767..146577 | TCONS_00002660-exon-sc0000021-1510915933:144767..146577 | Clytia hemisphaerica | exon |
| TCONS_00002660-exon-sc0000021-1491911889:149652..149996 | TCONS_00002660-exon-sc0000021-1491911889:149652..149996 | Clytia hemisphaerica | exon |
| TCONS_00002660-exon-sc0000021-1491911889:146707..146805 | TCONS_00002660-exon-sc0000021-1491911889:146707..146805 | Clytia hemisphaerica | exon |
| TCONS_00002660-exon-sc0000021-1491911889:144767..146577 | TCONS_00002660-exon-sc0000021-1491911889:144767..146577 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:144767..149996 - |
Blast
The following BLAST results are available for this feature:
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