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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002649 ID=TCONS_00002649|Name=TCONS_00002649|organism=Clytia hemisphaerica|type=transcript|length=1536bp
ATTAAATTATATGATACATCATGCAATAATTACTTGAAAACATCTCAAAC
AGGTGGTTGATCACCGAAACCTTGACATCAATGAAATATCCACATAAAAT
GTTAGATATCAAAATACTTGCAGCAACAATTTATCTAATTCTGGCAAATA
ATCCAATCTCTGCCAAAGAGATTATTAGGGATAACATAGTGGATTTTTTA
GACAGACCTATTCTTggtaaaaagataaaaaaccaaACGAAACAATTATT
GGTTCCTgacattaaaatcaataatgATAACATGGAAAATGATTCGGGAC
CGGCGCCGGGATCACCACATTTGATAGAGTATCAATCATATTCAACTTTA
CGACCTGGTATCCATCATACCAAGGATCCAACTATTCATAAAACCATTGC
AACAACAATTAATGGAAAACCAGataGTGGATCTTCTTCTTCAGCCTtca
ctggtgaaaatttgaagaccATAATCATTTTACTATTGTGTATATTATTG
GCGCTGATAGTTTTTGTAGTTGTTCATTTCTATCTCACAATGAGAAGGAC
GTACACGGGTGTTTTCGTACCCAGACATAATTTCGTTCCCGCAAATCCAT
TCGACGCTTCTTGGATCTATGAACATATAGACTGTGTACCTATTATCATA
CAAGGAGGAGGAGAGAAAAGAGGCTCGACAATTccatttttcaaagcaaa
acatAAAAGAAGAAGAGCTATGATAACACATCTTTAAGCGCTCTATAATT
TCGTTCGAGAAAACATACGATTTCGTAATCTGCATCCCTTCCTAAGAATG
ATGATAGTCGGAAAAGAAAACTCAGCATTTTCTTTAATCTTTCCGGAGTA
AGTGGTTAACTAGCTGGGTCATTGTGTACGTATTGTGTACGTATTGTGTA
CGTATCGCTTTCTGGGAGCAGGTCGCTCAAGAAAATGGGCGACAAAGGAT
GTATGGCAATGAATAGATACTATGGGCAATTCTTCAGCACTTACATACat
ggaatcaaaacaaaagtacaAAAATTTATTGCAGGATATTGTGGAAATTA
TTGGTGACTAATTTTTATTGGGAGAGGAATAATATTGAGAGTGAAAGATT
TTACACCAATTAAAGAATTAAAACAGTTTCTAATCATTCACTACTGTACT
ATATTGGTCGCGTTGGAATACATATTCTAGACGAACAATAAATTTGTTTG
GGTGAACGTGTTTTGAGTATAATTAAATCTTGCAATTGAAAAAGTTTTGC
CAAACAGTGTGAAGTGAACCGtgatgtttttgaaaacaaatttcaaatgt
ttcatctgaaatattttgaatgaaatatattaacataaaattatcaattt
ataaaagaaattcattaattgtttatttttttaaatttttggttttgttg
tATATGGTAAAATATTAaggtaaatatttatttttcgagGCCTTCAGTAT
AATTAATTCTCCCCTAATAATTTATTACGACATTTTTGGGATTTTGCTAG
AATTTTAAGGGATATTTTGAGTATAATTAACATATC Run BLAST on NCBI protein sequence of TCONS_00002649-protein >TCONS_00002649-protein ID=TCONS_00002649-protein|Name=TCONS_00002649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MKYPHKMLDIKILAATIYLILANNPISAKEIIRDNIVDFLDRPILGKKIK
NQTKQLLVPDIKINNDNMENDSGPAPGSPHLIEYQSYSTLRPGIHHTKDP
TIHKTIATTINGKPDSGSSSSAFTGENLKTIIILLLCILLALIVFVVVHF
YLTMRRTYTGVFVPRHNFVPANPFDASWIYEHIDCVPIIIQGGGEKRGST
IPFFKAKHKRRRAMITHL Run BLAST on NCBI transcript from alignment at sc0000021:1001790..1008121+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002649 ID=TCONS_00002649|Name=TCONS_00002649|organism=Clytia hemisphaerica|type=transcript|length=6332bp|location=Sequence derived from alignment at sc0000021:1001790..1008121+ (Clytia hemisphaerica)
ATTAAATTATATGATACATCATGCAATAATTACTTGAAAACATCTCAAAC
AGGTGGTTGATCACCGAAACCTTGACATCAATGAAATATCCACATAAAAT
GTTAGATATCAAAATACTTGCAGCAACAATTTATCTAATTCTGGCAAATA
ATCCAATCTCTGCCAAAGAGATTATTAGGGATAACATAGTGGATTTTTTA
GACAGACCTATTCTTggtaaaaagataaaaaaccaaACGAAACAATTATT
GGTTCCTgacattaaaatcaataatgATAACATGGAAAATGATTCGGGAC
CGGCGCCGGGATCACCACATTTGATAGAGTATCAATCATATTCAACTTTA
CGACCTGGTATCCATCATACCAAGGATCCAACTATTCATAAAACCATTGC
AACAACAATTAATGGAAAACCAGGTGAGTTTCCCTTGTCGTTTTTTTCTT
ACTGtcacccactgacctttatttatccctggaccaagctatatccgcca
tctttgatcgaagttttttctTGCATTGGTACTCGTAAAGAAGCCATTAG
AGTGCTAGAAATTAACGTCTAGCAACgacgctacatcatcaaaattttcg
aGGGAGtatagatctagcgctctcgatgcatttataACACTATTAAGTAG
TGCCGCCATCAggattagggtaccacttttcaaaaaactccgatcaaaga
ttttgcttggccgggattgagaaacttgttCAGGGTATAGAAAGGTCATT
GCTGTCACCACTGCTATTTCAATCGGGTTTACTTTCACAAGGTTTTAAAT
CCCGAGTCACAAAAAGGTGAGATTTTCTTGATTTACTCCCAATAGTCagc
attttgaaagattttgtatGGATTTAATTTCTATGGATCAACCAAACAAT
AAAACGCcaagaaataattttacaaGTATCTTACGACGCtggaaatctaa
atctaaaattccaTGTGGTTTTCATTTTGTTGAGTCAGCCATCTCACACG
CGTGATCTTTTATACGAGATTTGTTTTTCAGGCAATAGAAAAGGACGTAA
ATAAAATCCCATCAGATAGATTACgccgaggggcaaatcactcaaaaaat
ggtgtacgagatttatgatttatttttgatttatgatttatttttgattt
atttttgatttatgatttatttttgatttatttttgatttatttttgatt
tatttctgatttatttttgaattatttttgatttatttctgatttatttc
taatttatgaataggagtaattttatggaaaaattttttcaaattataac
gaACTGATACTCAAAAtcattgtcaaaaaaaattaaaaaagttgaaaagt
caattttttttcgaaagattttttattttatttttatttattcatgattt
atttttgatttattgatttatttctgatttatttctgatttatttttgat
ttattgatttatttctgatttatttctgatttattgatttatttctgatt
aatttttgatttatgatttatttctgatttatttttgatttatgatttat
ttatgattttttttttatttatgatttatttttgatttatttttgattta
taaaattgtgtacgagatttattttagtgatttgcccctcggaTTACGCG
AATAGGTTTGGAATCTACAAAAACTTAAGCGCGTATGAATGCGATTCAAA
TCGGTAACTGCAATATAGTCGAAATATGTTGAGATTTTAGTTTATTTTCg
cgttttttcagaatttaaagtttgggCGAAAATTGTGATTTTACCACTTA
ATTTCATTTGAAGGGTTCGTTGGCTGCTAGGCTATATTCTgactcaggta
agttatggcatgtctcaaaaacctgaaaattaccataatttttgaaggcc
attagccggcagaaaatgaggaaaccaatgatttgcAACNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaa
aactaaaaaatgctgacgtcagcaaaacttgttttttgaataactccagt
ttggccaaagatagaaacatgaaatttggactgaaGTTAGACATCATTTA
AAgggtcattttgcaaaaaaaaaaattgaaattttgctgacatcagcact
ttattgcaaaatttcgtattttgctgatttctgctgacgacagcaaaatt
ttgaaaaatttctttttgcaaaatgatccttttaatgatattcaacgttg
gtccaaatttcatgtttctaccattagccaaactggagatatttaaaaaa
acaagttttgctgacgtcagcactttttggtttttgcggtttttcgcgaa
aataagggcataaacaattaggtaacacccctacagcaaaacttcatcat
ggtatcCTTCGTTGCAAATCATCGGTTtcctcattttctgccggctaatg
gccttcaaaaattatggtaattttcaggtttttgagacatgccataactt
acctgaggaGCCTTATTGGAGCAATATCGAGCTTTtgaatcctgagatcc
taagcgGTCGTAaatcttaagtctaatgttaaaactcagatttaaaaact
ttccaaccgtactttaatacgttttaaaatcatttgtggtgtttaaaatt
tcgcgtCGCAATCCCctttgtttcaaatattttgtccaagaTTGTGGTTA
TGGTGATAAGAAATGATATGATACAATAATTCTTTGCTTTAAatgaatga
aaactttttttcaacttttttttcagataGTGGATCTTCTTCTTCAGCCT
tcactggtgaaaatttgaagaccATAATCATTTTACTATTGTGTATATTA
TTGGCGCTGATAGTTTTTGTAGTTGTTCATTTCTATCTCACAATGAGAAG
GTAGGTACCAACCCCTTTCCGGAATTTCCAGCGGAGCTGTGTATAAGTCa
ccaagcggttttcgtgatgacgtgttagggacttttttctagcgtgattt
cgtgatttgaaaattagtgatcagaggtcaaaacgtgatagTGATTTGAA
GGATTTTTGAGCTGTGGTATGTGATTGGGACTTTTACAAAGTTTcacatt
ttccaaattttttgctgatttttatgatcgtgattgaagacaaaaaattg
acGTGATATCATGATCAGActtaccgctggggggcctctgtGTAGGTTGT
AGGTAGACAACCCTAACATCTACACAAGGTCACTAGAATCGAtcaattta
ggggggggggggtaatttgaaaACAGAGGTTAGACCAACACACGGTAAAC
ACCTCTGTAACTGCCGCTATTTCTTTCCGACCTAGGTCCTCTCGGATata
taatgatgatgatgatttttttcaaaatgtgctTAACTTGTAATTAGCAT
TATTTTGGCCATGGAAGCCTCGTGTTctgatatagtttgttcttacctgt
atcagggatatgttatactATAgtggagctggataacgcacatttaaaaa
gccttgttctatctctgtccctgacattaaaatttgatatgaaatttaac
ttttttaattacaaactcgtgaaatttgtatttcctcttagccaatgatt
ctgctgctgcatttatcgtttacgattaaaaacttttaattatcaagagg
gtctgtaaaacattggtgaatggcaatttaaaaaaatgaaaaacattgtt
ttcattgtaaagttataagaagtttcttctctaagattataaatagtact
ttttcatttgaaataccgcgctacaccgcNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttacaataga
aaagacaaagaagcaatccgctaaggaattctcgtccttcatccagctcc
gctataacatatccctgcctGTATTTATCTCCTTGCTTTTATTATCAGTC
TCGAAGGATATCATCGTCTAAGGTTATGAGAAGTATTAATCCAGGCTAAT
GAACACGCGAATATTTATATGGGTTATGCACAGTCAAAATCGATAAGAAG
AAAGTTGTGAGTTGTGGGTTGTGAGTTGTGATAGTTACAAGCTTAATAAT
TTGATCTGGGCATCCatttaagaatttatttttgaccATCGCAGATAGTT
CCttaggtacacgctttttttttaagaatgggcTTTtatcatttcatcat
ggatatttttaactatttaggaaaattcatcctaaaatattcttacggta
ttcttagctTAGGATTTGGGATGATTGGtaatttaaagttaaaaaatagt
tctttaaatgccatttttagggtttgttgccaaattccatgatggtggtg
TTCTttatattcttagcatattcttaattttttagccattttcatgatga
aatttcttataaagtatattcttataaaaaaaagcgtgtagtgaTTTGTC
AAATATTGGACTGTcaataacaaatattttttggtcGTTTTAGGACGTAC
ACGGGTGTTTTCGTACCCAGACATAATTTCGTTCCCGCAAATCCATTCGA
CGCTTCTTGGATCTATGAACATATAGACTGTGTACCTATTATCATACAAG
GAGGAGGAGAGAAAAGAGGCTCGACAATTccatttttcaaagcaaaacat
AAAAGAAGAAGAGCTATGATAACACATCTTTAAGCGCTCTATAATTTCGT
TCGAGAAAACATACGATTTCGTAATCTGCATCCCTTCCTAAGAATGATGA
TAGTCGGAAAAGAAAACTCAGCATTTTCTTTAATCTTTCCGGAGTAAGTG
GTTAACTAGCTGGGTCATTGTGTACGTATTGTGTACGTATTGTGTACGTA
TCGCTTTCTGGGAGCAGGTCGCTCAAGAAAATGGGCGACAAAGGATGTAT
GGCAATGAATAGATACTATGGGCAATTCTTCAGCACTTACATACatggaa
tcaaaacaaaagtacaAAAATTTATTGCAGGATATTGTGGAAATTATTGG
TGACTAATTTTTATTGGGAGAGGAATAATATTGAGAGTGAAAGATTTTAC
ACCAATTAAAGAATTAAAACAGTTTCTAATCATTCACTACTGTACTATAT
TGGTCGCGTTGGAATACATATTCTAGACGAACAATAAATTTGTTTGGGTG
AACGTGTTTTGAGTATAATTAAATCTTGCAATTGAAAAAGTTTTGCCAAA
CAGTGTGAAGTGAACCGtgatgtttttgaaaacaaatttcaaatgtttca
tctgaaatattttgaatgaaatatattaacataaaattatcaatttataa
aagaaattcattaattgtttatttttttaaatttttggttttgttgtATA
TGGTAAAATATTAaggtaaatatttatttttcgagGCCTTCAGTATAATT
AATTCTCCCCTAATAATTTATTACGACATTTTTGGGATTTTGCTAGAATT
TTAAGGGATATTTTGAGTATAATTAACATATC Coding sequence (CDS) from alignment at sc0000021:1001790..1008121+ >TCONS_00002649 ID=TCONS_00002649|Name=TCONS_00002649|organism=Clytia hemisphaerica|type=CDS|length=1971bp|location=Sequence derived from alignment at sc0000021:1001790..1008121+ (Clytia hemisphaerica)
ATGAAATATCCACATAAAATGTTAGATATCAAAATACTTGCAGCAACAAT
TTATCTAATTCTGGCAAATAATCCAATCTCTGCCAAAGAGATTATTAGGG
ATAACATAGTGGATTTTTTAGACAGACCTATTCTTggtaaaaagataaaa
aaccaaACGAAACAATTATTGGTTCCTgacattaaaatcaataatgATAA
CATGGAAAATGATTCGGGACCGGCGCCGGGATCACCACATTTGATAGAGT
ATCAATCATATTCAACTTTACGACCTGGTATCCATCATACCAAGGATCCA
ACTATTCATAAAACCATTGCAACAACAATTAATGGAAAACCAGataGTGG
ATCTTCTTCTTCAGCCTtcactggtgaaaatttgaagaccATAATCATTT
TACTATTGTGTATATTATTGGCGCTGATAGTTTTTGTAGTTGTTCATTTC
TATCTCACAATGAGAAGGACGTACACGGGTGTTTTCGTACCCAGACATAA
TTTCGTTCCCGCAAATCCATTCGACGCTTCTTGGATCTATGAACATATAG
ACTGTGTACCTATTATCATACAAGGAGGAGGAGAGAAAAGAGGCTCGACA
ATTccatttttcaaagcaaaacatAAAAGAAGAAGAGCTATGATAACACA
TCTTTAAATGAAATATCCACATAAAATGTTAGATATCAAAATACTTGCAG
CAACAATTTATCTAATTCTGGCAAATAATCCAATCTCTGCCAAAGAGATT
ATTAGGGATAACATAGTGGATTTTTTAGACAGACCTATTCTTggtaaaaa
gataaaaaaccaaACGAAACAATTATTGGTTCCTgacattaaaatcaata
atgATAACATGGAAAATGATTCGGGACCGGCGCCGGGATCACCACATTTG
ATAGAGTATCAATCATATTCAACTTTACGACCTGGTATCCATCATACCAA
GGATCCAACTATTCATAAAACCATTGCAACAACAATTAATGGAAAACCAG
ataGTGGATCTTCTTCTTCAGCCTtcactggtgaaaatttgaagaccATA
ATCATTTTACTATTGTGTATATTATTGGCGCTGATAGTTTTTGTAGTTGT
TCATTTCTATCTCACAATGAGAAGGACGTACACGGGTGTTTTCGTACCCA
GACATAATTTCGTTCCCGCAAATCCATTCGACGCTTCTTGGATCTATGAA
CATATAGACTGTGTACCTATTATCATACAAGGAGGAGGAGAGAAAAGAGG
CTCGACAATTccatttttcaaagcaaaacatAAAAGAAGAAGAGCTATGA
TAACACATCTTTAAATGAAATATCCACATAAAATGTTAGATATCAAAATA
CTTGCAGCAACAATTTATCTAATTCTGGCAAATAATCCAATCTCTGCCAA
AGAGATTATTAGGGATAACATAGTGGATTTTTTAGACAGACCTATTCTTg
gtaaaaagataaaaaaccaaACGAAACAATTATTGGTTCCTgacattaaa
atcaataatgATAACATGGAAAATGATTCGGGACCGGCGCCGGGATCACC
ACATTTGATAGAGTATCAATCATATTCAACTTTACGACCTGGTATCCATC
ATACCAAGGATCCAACTATTCATAAAACCATTGCAACAACAATTAATGGA
AAACCAGataGTGGATCTTCTTCTTCAGCCTtcactggtgaaaatttgaa
gaccATAATCATTTTACTATTGTGTATATTATTGGCGCTGATAGTTTTTG
TAGTTGTTCATTTCTATCTCACAATGAGAAGGACGTACACGGGTGTTTTC
GTACCCAGACATAATTTCGTTCCCGCAAATCCATTCGACGCTTCTTGGAT
CTATGAACATATAGACTGTGTACCTATTATCATACAAGGAGGAGGAGAGA
AAAGAGGCTCGACAATTccatttttcaaagcaaaacatAAAAGAAGAAGA
GCTATGATAACACATCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002649-exon-sc0000021-1491911889:1001790..1002212 | TCONS_00002649-exon-sc0000021-1491911889:1001790..1002212 | Clytia hemisphaerica | exon |
| TCONS_00002649-exon-sc0000021-1510915933:1001790..1002212 | TCONS_00002649-exon-sc0000021-1510915933:1001790..1002212 | Clytia hemisphaerica | exon |
| TCONS_00002649-exon-sc0000021-1575043694:1001790..1002212 | TCONS_00002649-exon-sc0000021-1575043694:1001790..1002212 | Clytia hemisphaerica | exon |
| TCONS_00002649-exon-sc0000021-1491911889:1004716..1004839 | TCONS_00002649-exon-sc0000021-1491911889:1004716..1004839 | Clytia hemisphaerica | exon |
| TCONS_00002649-exon-sc0000021-1510915933:1004716..1004839 | TCONS_00002649-exon-sc0000021-1510915933:1004716..1004839 | Clytia hemisphaerica | exon |
| TCONS_00002649-exon-sc0000021-1575043694:1004716..1004839 | TCONS_00002649-exon-sc0000021-1575043694:1004716..1004839 | Clytia hemisphaerica | exon |
| TCONS_00002649-exon-sc0000021-1491911889:1007133..1008121 | TCONS_00002649-exon-sc0000021-1491911889:1007133..1008121 | Clytia hemisphaerica | exon |
| TCONS_00002649-exon-sc0000021-1510915933:1007133..1008121 | TCONS_00002649-exon-sc0000021-1510915933:1007133..1008121 | Clytia hemisphaerica | exon |
| TCONS_00002649-exon-sc0000021-1575043694:1007133..1008121 | TCONS_00002649-exon-sc0000021-1575043694:1007133..1008121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:1001790..1008121 + |
Blast
The following BLAST results are available for this feature:
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