TCONS_00002631 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002631
Unique Name	TCONS_00002631
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1240

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000021:549843..556023+
coding sequence from alignment at sc0000021:549843..556023+

transcript sequence

>TCONS_00002631 ID=TCONS_00002631|Name=TCONS_00002631|organism=Clytia hemisphaerica|type=transcript|length=1240bp
TGATACAGTTATAATTTATGTGATAAAAATATAAGATGGATAAATATTGG
AAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGGACC
AGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTGATC
ATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACGATAAAAACATA
CCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACGACGGATATCAT
TTTTAAAGATTATCGATTTGAAAGTGATGCTAGAAAAACAACCAAGaTTT
GCCGTAAAGCGTTACTCAAGTTATCGAATATTGTAAAATCATATTGGAAA
GGAACGTTGAAACTTCTTGTCATTCAAGGTTATATGTCATCACCAGAAAA
AGAAGTGGAAAACGATAAACTACATATGCTAGGACGAGCATTTAATCTTG
AATTAAAACTAAGTAAAAATCCAAGCAAGCATCACAAAGTAGCTGATCAT
GTCATTTCAAGACTAGGGGAACTTGCATATAGAAATACACAATTTCAATA
TGTTAGATTTGACGAAGGTGGATATCTTCATGTTTCCTGCCCATGCGAAg
TCGATAAAGTTGAAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTT
CAAAATGGCAGCCGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGT
ACTCACAATGAACCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGC
TGAtgcatcaaaacaaaggaactCTCATTCAGAATTATGTACAAATTACA
ACAGATAATGACAAAAGTATCACAATCAGTAGACACCACTTGATTTTTGT
TTCCAAAACTCAAACTAAATACGCTAAAGACGTTCTCACCGGTGATTTAT
TATTCACCTATGATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACA
CACATTGAGCATGATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAA
AAGTGGAACTTTAATCGTCAATGATGTTTATGCATCTTGCTACGCTATGT
TTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGGTTGTGGAGACaagtt
tatgattttttgaaatactttgattTCTCAATTGGAATACCTTCAGATGA
AATACATTGGTACCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacg
ttttataaaaaatcttttggaaGATGTTTGGAAAGTGGCG

Run BLAST on NCBI

protein sequence of TCONS_00002631-protein

>TCONS_00002631-protein ID=TCONS_00002631-protein|Name=TCONS_00002631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MDKYWKTCLLLCLLSPVNLCGPGRSPSHSRFKRLRKGDHFPEYLHSEVDV
YDKNIPPKHCSELVQIITTDIIFKDYRFESDARKTTKICRKALLKLSNIV
KSYWKGTLKLLVIQGYMSSPEKEVENDKLHMLGRAFNLELKLSKNPSKHH
KVADHVISRLGELAYRNTQFQYVRFDEGGYLHVSCPCEVDKVESRCFPSN
SEVNLQNGSRALIKDIRPGDSVLTMNQNGELKFDEVVMLMHQNKGTLIQN
YVQITTDNDKSITISRHHLIFVSKTQTKYAKDVLTGDLLFTYDSLTKKAA
KSIVTHIEHDVTQKGMHAPLTKSGTLIVNDVYASCYAMFPSHRVSHAVFW
LWRQVYDFLKYFDFSIGIPSDEIHWYPDVFRKTLVYFNVL

Run BLAST on NCBI

transcript from alignment at sc0000021:549843..556023+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002631 ID=TCONS_00002631|Name=TCONS_00002631|organism=Clytia hemisphaerica|type=transcript|length=6181bp|location=Sequence derived from alignment at sc0000021:549843..556023+ (Clytia hemisphaerica)
TGATACAGTTATAATTTATGTGATAAAAATATAAGATGGATAAATATTGG
AAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGGACC
AGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTGATC
ATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACGATAAAAACATA
CCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACGACGGATATCAT
TTTTAAAGATTATCGATTTGAAAGTGATGCTAGAAAAACAACCAAGGTAT
TGTTTACTTTTATTGCTAACAATTAACGGAAAGTTTTTTTATGCTGATCT
CATTTTTTTCGGAATTTGGTTGGTTAAGCTTTTGTCTTAAAAGATTATCT
GATAAAGTAGTCTTTTTATTCGGACTATGgttcattgatttcaaagcccc
gaagAGGCTAGATCTGAAACTTCTGACACGTGACTCGCTTGGCTTTCatg
caaaatttctaaatgcggGGCGAATCTTAAGGCTTTATTTTTTCTTGCTT
GCGAAAGATTGAAGATTCCTCTCAAACTCGATACTATTATTCTAGTTATT
CATACAAGCTAGACAATGGAAAAGAggtaaatattcaaaaaatttatttc
aaaagttttatgtctttcaaaaaaagttttagcttttattttttttttag
tcggaccctaaattttcgaaaaactaacGAAAccttatcaaaataaaaca
aagcaCTTGAAAATTCATTAATAAAGACCTAAGGAAACCGGGAACCCAAC
GGTCTACCAACAGGAAATgattaaaatataaattttcctggTGTTGGTGT
GTTTACCACGGTTTTTGATTAggtataaattgaaaaatttaaccAAAAAA
GGCAACGTTTTTTTTGACGAACACCTTTTGAGCGACGTggtgatttcttt
ttttgacagtttttaaCGTGATCAAAGCGAAGAGCTTGCTCGACCAGAAT
TAAGTTTCGATCCTCTTAAGATTTTAAGcacgacccccccccccgggcaa
taTCAAGATGAAATAGGAAACTACAGGTGCGAGTGTCAAGCTAAATCTGT
TTCACTCTAAAATTAATTGAAAGGATTAAGttgattctttttcttcttca
ttttcaatcttcattttcgcacaaaaccgctatctaattcgaattctata
aAAAAATACGACTtcttttgtctccgctgcaaattatattgaaacAGATT
TTATGAAACGTTTCTCACATTACATTAAACTTCAAATAGTTCTTTATAGC
CCCATTAAAAGCCATAAAATGAACAATTAGGCATATCATTGTGCATTTTA
GAACCGGAAAAGCTAATGGTGCATAAAGAGTCTGCCGTTAAAAAGTcgta
aaacaaacaaatttacaatattaaattgttttttgatCGAAAACTTCAAA
CTGGCATAAAAGCTTGAGAGTTAGACCAGACAATGGTTAGACTAGAAAAT
GGTTTTAGCACAATCACAAAGGTATTTTTCATACTcctttaaaatacttt
ctgcTTATGCCCttaaaaccattgagtttaaagccccaacggctagagtt
caatctctaacctttctcaggcaagaaaaagcaaagccttaaaaaatgcg
ccgcatttttgacgacagattgaatctagcaattcctttgtttacgattg
ataattttttcgaaatttagcggtaaattttagtttcaatctgttatttg
tgtaaaaaccaggcgagccgctcaaggccgcgcaacttggtaggatttgt
tggcttcaaattttaccgaggagattgacttctagcccttcgggcttata
cttcattgcttAAAAccaagtggtcaggagctacGACTAAAAGTCTCGGA
CTTAGCATTTTGACCTATGGTTTTAGAAGCATATACGCGTCTTTTGGCTT
TAAgcttacaaaaataaacaagaagccggagcggcgtgaaggtccagctg
acatggcaataaccgaatgtcgttcgtactgggttccttaagtgacgcaa
aaaaatttccttcccatcctccactctgagcttctattctttaaAACTTG
CTTTGTATTGCaaagttctgaaagtttttgatgcatttcacgaaatttcg
aaacttttgacgcttaggggattcgaacccactatatacaaatCACCTAT
GAATGGAtcgccagcgccttaaccactcggccatcgggtcacaactgcat
taaggagttcaaagttccttataaacatggtatttactccaaactctacc
cgggggctaaaacccttaccaggggttaactcccatccccaaccctacct
gaccctacctgaaacaaccctttaatctaaccgggaaatttgactctact
accaattcaatacaaaacataggtcaaacaacgcgcgggtaggcggggca
aaaattctagatcggtggttggtttagcctggacttgttaatttattgcg
cgcacaggccccgacaaagactaaatcttttcgatcagttgctttttaaa
ggtccattctgctgcgcgctggaccaacaaaaaatagcaaaaattaaAGT
TTTGGATTTGGCATTGAATAAGGTAGagctaattttaattttttgatttt
tttactttttttttggatttagaTTTGCCGTAAAGCGTTACTCAAGTTAT
CGAATATTGTAAAATCATATTGGAAAGGAACGTTGAAACTTCTTGTCATT
CAAGGTTATATGTCATCACCAGAAAAAGAAGTGGAAAACGATAAACTACA
TATGCTAGGACGAGCATTTAATCTTGAATTAAAACTAAGTAAAAATCCAA
GCAAGCATCACAAAGTAGCTGATCATGTCATTTCAAGACTAGGGGAACTT
GCATATAGAAATACACAATTTCAATATGTTAGATTTGACGAAGGTGGATA
TCTTCATGTTTCCTGCCCATGCGAAggtgatttcatttttattgaatCTC
TTTCTTTATGATAGGAAATGTCTACATTCATTTTTAGGATAATACATTAT
TGtcctttcccagctggcactcaaagttgttttaacgttcaaataacgtt
atttggacgttatgaatgtcaaatggacgctgttttgacgttgtgtgccg
tctgggttAGCATTCTTCTTGCATGAACCGGAAGAAGCTTCCTTTATCCT
TCTTGGACAAGAAGCCAATGCCCAAAAGCAAAGGTTCGGTTACCGTCGTT
TTAGATAAGatggccgggtagctcagtcggtagagcattcgccttacaat
ctaaggtttgtgggttcgatccccggtcaccgctaactcagcggatgagt
agcttagattgggtaatctgatctaggcggtaagttactgggagctgaga
gtaggtgtggcgctccacctcagcattcgatctcccagatCTAGCGcgaa
tagaaaaggggatagacccCTTCACTCCccgctccgccgacagccactag
atgaatatacttacttataCTTACTTAGATAAGATTCTACCTCCAGGGAT
TTGATTCCACTGACCTTTCCGCTATCTTTTCCGGGATTGCCAGCTcaaga
ttgaaaaaatattttttctcaatgaGGTACCGAAAAACGATTGTGCTGAT
TTAGGAAACTGGTTAACTTTCCAAACcctcatttttcaactacccagAAC
TCTGGTCTTTTTCCTGCTAGAAAGTGACGGTAGAATCTTGGTATATGAAG
TGGAATCTCACCCAAATCAACATCCGAAAGTGAATACTGGATACTCATCT
CAATtaaatcatgacgtcatatCATGGGAAAATTCATCTCAAGAATATAG
ATCattttcgatttgaaaacttgcaTTTGCGTCAAGGAAAAGACAATCTA
AAATTAAAAGCATGTCAAATATGTGTCTACTTCAAGTGTGGATTTTAAAC
TGTGCACACATAATTACCCAATTAAATTTTACAAACGCGTTTCATCGAAA
TTGATTTAATTGTTGGGGTTTGGCAAAAAAAGTGCCTTAAAAGCAGACTT
ATATTTCATCACCAAGCTTTAATAATGCTTTAAATGGAGGATAAAGACAG
CTTCCTGGCAACATTTTAGTGTCATTTATTTCTTTACAGTTTATTCTTAT
ATCGTTAGCTTTTTATCCCTATTTGTCCTTATCCCGGGATGGGACTTGTA
GATTTCCGTATGGATGGGGCCCAGTAGTGTGGTGACCGGGGGTTCAATGC
GCCTTCGAGCGGCCAAGCTTTTTGGATGCTCTGAAAGTCTTTGGGGTGTT
GAGAGTCAATGGATCCTAGAGGCGCCTCTGATTGCTTCTCTGCACCAAAA
GATTAGCATCGGCATAAAAGAGGGAGGATATTCAACAAATTTCGTACCGA
CTTCGCGTAATTATTCCAAAGAAAATGGGCTCCCAAGTTTGCCTCAGTTC
TGGTCGACCCACCAAACTACAGGTGGAGACGCCCTTACTTACTTCCATAT
CAAGtattaaaatattcaatatttctttttttcgatttctNGATTCTACC
TCCAGGGATTTGATTCCACTGACCTTTCCGCTATCTTTTCCGGGATTGCC
AGCTcaagattgaaaaaatattttttctcaatgtGGTACCGAAAAAAGAT
TGTGCTGATTTAGGAAACTGGTTAACTTTCCAAACCCTCATTTTTCAACT
ATCCAGAACTCTGTTCTTTTTCCTGCTAGAAAGTGACGGTAGAATCTTGG
TATATGAAGTGGAATCTCACCCAAATCAACATCCGAAAGTGAATACTGGA
TACTCATCTCAATtaaatcatgacgtcatatCATGGGAAAATTCATCTCA
AGAATATAGATCattttcgatttgaaaacttgcaTTTGCGTCAAGGAAAA
GACAATCTAAAATTAAAAGCATGTCAAATATGTGTCTACTTTAAGTGTAG
ATTTTAAACTGTGCACACATAATTACCCAATTAAATTTTACAAACGCGTT
TCATCGAAATTGATTTAATTGTTGGGGTTTGGCAAAAAAAGTGCCTTAAA
AGCAGACTTATATTTCATCACCAAGCTTTAATAATGCTTTAAATGGAGGA
TAAAGACAGCTTCCTGGCAACATTTTAGTGTCATTTATTTCTTTACAGTT
TATTCTTATATCGTTAGCTTTTTATCCCTATTTGTCCTTATCCCGGGATG
GGACTTGTAGATTTCCGTATGGATGGGGCCCAGTAGTGTGGTAACCGGGG
GTTCAATTACGCCTTCGAGCTGCCAAGCTTTTTGGGTGCTCTGAAAGTCT
TTGGGGTGTTGAGAGTCAATGGATCCTAGAGGCGCCTTTGATTGCTTCTC
TGCACCAAAAGATTAGCATCGGCATAAAAGAGGGAGAATATTCAACAAAT
TTTGTaccgagtttgaaaaatgggcTCCCAAGCTTGCCTCAGTTCTCGTC
GACCCACCAAACTACAGGTGGAGACATCCTTATTTACTTCCATATCAAGt
attaaaatattcaatatttctttttttcgatttcCTTTCAGTCGATAAAG
TTGAAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTTCAAAATGGC
AGCCGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGTACTCACAAT
GAACCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGCTGAtgcatc
aaaacaaaggaactCTCATTCAGAATTATGTACAAATTACAACAGATAAT
GACAAAAGTATCACAATCAGTAGACACCACTTGATTTTTGTTTCCAAAAC
TCAAACTAAATACGCTAAAGACGTTCTCACCGGTGATTTATTATTCACCT
ATGATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACACACATTGAG
CATGATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAAAAGTGGAAC
TTTAATCGTCAATGATGTTTATGCATCTTGCTACGCTATGTTTCCGTCGC
ATCGTGTTTCGCATGCGGTGTTTTGGTTGTGGAGACaagtttatgatttt
ttgaaatactttgattTCTCAATTGGAATACCTTCAGATGAAATACATTG
GTACCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacgttttataaa
aaatcttttggaaGATGTTTGGAAAGTGGCG

Coding sequence (CDS) from alignment at sc0000021:549843..556023+

>TCONS_00002631 ID=TCONS_00002631|Name=TCONS_00002631|organism=Clytia hemisphaerica|type=CDS|length=3519bp|location=Sequence derived from alignment at sc0000021:549843..556023+ (Clytia hemisphaerica)
ATGGATAAATATTGGAAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGT
CAATCTTTGTGGACCAGGACGATCTCCTTCACACTCGAGGTTCAAACGCT
TGAGAAAAGGTGATCATTTTCCTGAATATCTTCATAGTGAGGTAGATGTA
TACGATAAAAACATACCCCCAAAACATTGTTCAGAATTGGTCCAAATTAT
AACGACGGATATCATTTTTAAAGATTATCGATTTGAAAGTGATGCTAGAA
AAACAACCAAGaTTTGCCGTAAAGCGTTACTCAAGTTATCGAATATTGTA
AAATCATATTGGAAAGGAACGTTGAAACTTCTTGTCATTCAAGGTTATAT
GTCATCACCAGAAAAAGAAGTGGAAAACGATAAACTACATATGCTAGGAC
GAGCATTTAATCTTGAATTAAAACTAAGTAAAAATCCAAGCAAGCATCAC
AAAGTAGCTGATCATGTCATTTCAAGACTAGGGGAACTTGCATATAGAAA
TACACAATTTCAATATGTTAGATTTGACGAAGGTGGATATCTTCATGTTT
CCTGCCCATGCGAAgTCGATAAAGTTGAAAGCAGATGTTTTCCATCAAAC
TCTGAAGTCAATCTTCAAAATGGCAGCCGAGCACTGATCAAAGATATTCG
ACCTGGTGACTCAGTACTCACAATGAACCAAAATGGAGAATTGAAATTCG
ATGAAGTTGTCATGCTGAtgcatcaaaacaaaggaactCTCATTCAGAAT
TATGTACAAATTACAACAGATAATGACAAAAGTATCACAATCAGTAGACA
CCACTTGATTTTTGTTTCCAAAACTCAAACTAAATACGCTAAAGACGTTC
TCACCGGTGATTTATTATTCACCTATGATTCATTAACCAAAAAAGCTGCC
AAATCAATTGTAACACACATTGAGCATGATGTCACTCAAAAAGGTATGCA
TGCTCCTTTGACTAAAAGTGGAACTTTAATCGTCAATGATGTTTATGCAT
CTTGCTACGCTATGTTTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGG
TTGTGGAGACaagtttatgattttttgaaatactttgattTCTCAATTGG
AATACCTTCAGATGAAATACATTGGTACCCCGATGTTTTCCGAAAAACTT
TGGTTTACTTCAacgttttataaATGGATAAATATTGGAAAACGTGTCTA
CTGCTCTGTCTATTGTCTCCAGTCAATCTTTGTGGACCAGGACGATCTCC
TTCACACTCGAGGTTCAAACGCTTGAGAAAAGGTGATCATTTTCCTGAAT
ATCTTCATAGTGAGGTAGATGTATACGATAAAAACATACCCCCAAAACAT
TGTTCAGAATTGGTCCAAATTATAACGACGGATATCATTTTTAAAGATTA
TCGATTTGAAAGTGATGCTAGAAAAACAACCAAGaTTTGCCGTAAAGCGT
TACTCAAGTTATCGAATATTGTAAAATCATATTGGAAAGGAACGTTGAAA
CTTCTTGTCATTCAAGGTTATATGTCATCACCAGAAAAAGAAGTGGAAAA
CGATAAACTACATATGCTAGGACGAGCATTTAATCTTGAATTAAAACTAA
GTAAAAATCCAAGCAAGCATCACAAAGTAGCTGATCATGTCATTTCAAGA
CTAGGGGAACTTGCATATAGAAATACACAATTTCAATATGTTAGATTTGA
CGAAGGTGGATATCTTCATGTTTCCTGCCCATGCGAAgTCGATAAAGTTG
AAAGCAGATGTTTTCCATCAAACTCTGAAGTCAATCTTCAAAATGGCAGC
CGAGCACTGATCAAAGATATTCGACCTGGTGACTCAGTACTCACAATGAA
CCAAAATGGAGAATTGAAATTCGATGAAGTTGTCATGCTGAtgcatcaaa
acaaaggaactCTCATTCAGAATTATGTACAAATTACAACAGATAATGAC
AAAAGTATCACAATCAGTAGACACCACTTGATTTTTGTTTCCAAAACTCA
AACTAAATACGCTAAAGACGTTCTCACCGGTGATTTATTATTCACCTATG
ATTCATTAACCAAAAAAGCTGCCAAATCAATTGTAACACACATTGAGCAT
GATGTCACTCAAAAAGGTATGCATGCTCCTTTGACTAAAAGTGGAACTTT
AATCGTCAATGATGTTTATGCATCTTGCTACGCTATGTTTCCGTCGCATC
GTGTTTCGCATGCGGTGTTTTGGTTGTGGAGACaagtttatgattttttg
aaatactttgattTCTCAATTGGAATACCTTCAGATGAAATACATTGGTA
CCCCGATGTTTTCCGAAAAACTTTGGTTTACTTCAacgttttataaATGG
ATAAATATTGGAAAACGTGTCTACTGCTCTGTCTATTGTCTCCAGTCAAT
CTTTGTGGACCAGGACGATCTCCTTCACACTCGAGGTTCAAACGCTTGAG
AAAAGGTGATCATTTTCCTGAATATCTTCATAGTGAGGTAGATGTATACG
ATAAAAACATACCCCCAAAACATTGTTCAGAATTGGTCCAAATTATAACG
ACGGATATCATTTTTAAAGATTATCGATTTGAAAGTGATGCTAGAAAAAC
AACCAAGaTTTGCCGTAAAGCGTTACTCAAGTTATCGAATATTGTAAAAT
CATATTGGAAAGGAACGTTGAAACTTCTTGTCATTCAAGGTTATATGTCA
TCACCAGAAAAAGAAGTGGAAAACGATAAACTACATATGCTAGGACGAGC
ATTTAATCTTGAATTAAAACTAAGTAAAAATCCAAGCAAGCATCACAAAG
TAGCTGATCATGTCATTTCAAGACTAGGGGAACTTGCATATAGAAATACA
CAATTTCAATATGTTAGATTTGACGAAGGTGGATATCTTCATGTTTCCTG
CCCATGCGAAgTCGATAAAGTTGAAAGCAGATGTTTTCCATCAAACTCTG
AAGTCAATCTTCAAAATGGCAGCCGAGCACTGATCAAAGATATTCGACCT
GGTGACTCAGTACTCACAATGAACCAAAATGGAGAATTGAAATTCGATGA
AGTTGTCATGCTGAtgcatcaaaacaaaggaactCTCATTCAGAATTATG
TACAAATTACAACAGATAATGACAAAAGTATCACAATCAGTAGACACCAC
TTGATTTTTGTTTCCAAAACTCAAACTAAATACGCTAAAGACGTTCTCAC
CGGTGATTTATTATTCACCTATGATTCATTAACCAAAAAAGCTGCCAAAT
CAATTGTAACACACATTGAGCATGATGTCACTCAAAAAGGTATGCATGCT
CCTTTGACTAAAAGTGGAACTTTAATCGTCAATGATGTTTATGCATCTTG
CTACGCTATGTTTCCGTCGCATCGTGTTTCGCATGCGGTGTTTTGGTTGT
GGAGACaagtttatgattttttgaaatactttgattTCTCAATTGGAATA
CCTTCAGATGAAATACATTGGTACCCCGATGTTTTCCGAAAAACTTTGGT
TTACTTCAacgttttataa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001422	XLOC_001422	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002631-protein	TCONS_00002631-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002631-exon-sc0000021-1491911889:549843..550138	TCONS_00002631-exon-sc0000021-1491911889:549843..550138	Clytia hemisphaerica	exon
TCONS_00002631-exon-sc0000021-1510915933:549843..550138	TCONS_00002631-exon-sc0000021-1510915933:549843..550138	Clytia hemisphaerica	exon
TCONS_00002631-exon-sc0000021-1575043694:549843..550138	TCONS_00002631-exon-sc0000021-1575043694:549843..550138	Clytia hemisphaerica	exon
TCONS_00002631-exon-sc0000021-1491911889:552515..552818	TCONS_00002631-exon-sc0000021-1491911889:552515..552818	Clytia hemisphaerica	exon
TCONS_00002631-exon-sc0000021-1510915933:552515..552818	TCONS_00002631-exon-sc0000021-1510915933:552515..552818	Clytia hemisphaerica	exon
TCONS_00002631-exon-sc0000021-1575043694:552515..552818	TCONS_00002631-exon-sc0000021-1575043694:552515..552818	Clytia hemisphaerica	exon
TCONS_00002631-exon-sc0000021-1491911889:555384..556023	TCONS_00002631-exon-sc0000021-1491911889:555384..556023	Clytia hemisphaerica	exon
TCONS_00002631-exon-sc0000021-1510915933:555384..556023	TCONS_00002631-exon-sc0000021-1510915933:555384..556023	Clytia hemisphaerica	exon
TCONS_00002631-exon-sc0000021-1575043694:555384..556023	TCONS_00002631-exon-sc0000021-1575043694:555384..556023	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000021	supercontig	sc0000021:549843..556023 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137644	0.134225	0.0779238	0.0762363	0.603267	0.47671	0.0884815	0	0	0	0	0	1.80797	0.998214	7.42509	7.7376	0.0516644	0.0264772	0.438956	0.076556	0.133082	0.0486846	0.118365	0.502184	0	0.0659461	0.0471843	0	0.152774	0.350218

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001657	Hedgehog
IPR003587	Hint_dom_N
IPR009045	Hedgehog_sig/DD-Pept_Zn-bd_dom
IPR001767	Hint_dom
IPR000320	Hedgehog_signalling_dom
IPR006141	Intein_N
IPR028992	Hedgehog/Intein_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0007275	multicellular organism development
GO:0007267	cell-cell signaling
GO:0006508	proteolysis
GO:0016539	intein-mediated protein splicing

Vocabulary: **Molecular Function**
Term	Definition
GO:0008233	peptidase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0016539	intein-mediated protein splicing
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity

Blast

[Close]

BLAST of TCONS_00002631 vs. Swiss-Prot (Human)
Match: IHH (Indian hedgehog protein OS=Homo sapiens GN=IHH PE=1 SV=4)

HSP 1 Score: 129.798 bits (325), Expect = 2.664e-33
Identity = 106/383 (27.68%), Postives = 168/383 (43.86%), Query Frame = 3

Query:   93 CGPGRSPSHSRFKRLRK---------GDHFPEYLHSEVDVYDKNIP--PKHCSELVQIITTDIIFKDYRFESDARKTTKICRKALLKLSNIVKSYWKGTLKLLVIQGYMSSPEKEVENDKLHMLGRAFNLELKLSKNPSKHHKVADHVISRLGELAYRNTQ--FQYVRFDEGGYLHVSCPCEVDKVE--SRCFPSNSEVNLQNGSRALIKDIRPGDSVLTMNQNGELKFDEVVMLMHQNKGTLIQNYVQITTDNDKSITISRHHLIFVSKTQTK--------YAKDVLTGD--LLFTYDSLTKKAAKSIVTHIEHDVTQKGMHAPLTKSGTLIVNDVYASCYAMFPSHRVSHAVFWLWRQVYDFLKYFDFSIGIPSDEIHWYP 1166
            CGPGR    SR +  RK           + PE        Y+  I    +   EL      DIIFKD       R  T+ C+  L  L+  V + W G +KL V +G+        E+  LH  GRA ++              +D   ++ G LA    +  F +V ++   ++H S   E         CFP+ ++V L++G+R  +  +RPGD VL M ++G   F +V++ + +    L    V  T D  + + ++  HL+F +   T+        +A  V  G   L+     L      ++ TH+       G +APLTK GTL+V DV ASC+A    H ++   FW  R ++  L +  ++   P + +HWYP
Sbjct:   28 CGPGRVVG-SRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPG-VKLRVTEGWDEDGHHSEES--LHYEGRAVDI------------TTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLLFTADNHTEPAARFRATFASHVQPGQYVLVAGVPGLQPARVAAVSTHV-----ALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLR-LFHSLAWGSWT---PGEGVHWYP 385

The following BLAST results are available for this feature:

BLAST of TCONS_00002631 vs. Swiss-Prot (Human)

BLAST of TCONS_00002631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IHH	2.664e-33	27.68	Indian hedgehog protein OS=Homo sapiens GN=IHH PE=...	[more]

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TCONS_00002631 (transcript) - C. hemisphaerica