TCONS_00002630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002630
Unique NameTCONS_00002630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002630 ID=TCONS_00002630|Name=TCONS_00002630|organism=Clytia hemisphaerica|type=transcript|length=1515bp
ttttgaatgttCGCGAAACAAAATGGCGTGTGGTTGTAGATTATTGCTGA
TTTCAACAATCGTAATTCTTGCAGAATGGTGCAAAGCTTTCCCAGccTCG
AGATTCATTGGAACACCAAATAATCAAAACTATGTTCGATCACAATTCCC
TAGAATGCCTTCAGAAGACAAATATTACAACAATTGGAAAAAATGGGCAA
ATTCTGAAGAAATAACACAATGGCAGCGTTCAGCCGTACCATACGGAGGA
CAAATGGAAGACACCAAAAGATTCTCCNTGGCAGCGTTCAGCCGTACCAT
ACGGAGGACAAATGGAAGACACTAAAAGATTCTCCATGCAAATACCGTTA
AATGATTTAAGAACTTTATACGGCTCGTATGATTTAGTACAAGCTGCAGA
AAAAAAAGCAGCTATTGTTCAGCCAATATATCAAGGTCAATCTCCATTAC
AAGCATACATTCAACAGCCTTCATATCCAAGTGTGATGACATTCATACCG
AATATGGCATTCCAAAAAGCTGACCAAAGAGGTGATATCATTCAACCAGA
GATTCGACAACAGTTATCACTACCTCCACCTAATATCCCTTACGATCCAA
CCGTTTTGGGAATACCACAGAATCCAACTCAATCTTGCCAAGGATGCAAT
GGTGATTGCAGTAATTACCTTTGTTATGGATGTGGTGGTTGTCCAGCTGA
TGGAACACAGAAACCACATTATATGTATCCCTACCAAAAACAGGATTCAG
gcTATCATGATGCTTTTGAAAGTCATGCAATGGATTTATCTGGACTAATC
ATATCTCCAGTTCCTCCATTACCGAAACGTATGCAACCAAAAGGCAAACC
ACGACCAGGGAAATCGAACACTCCTGAAGATGATGACGATAATGATGATG
ATAACGATGACGATGAggacgaaaacgaaagtgaaagtgactcCGACGAT
AACGACAATGACGATGACGACACAGTCGATGATGAGTCGGCTGCCGATAA
TgtaactgaaaatcaaacaatgaaCAATTCCTCTTCttcaaaattgaaga
aaatgaagaaaacaaatAAATCGAAACAAAGACATAAAAAAAAGAACCGC
TAGTTTGTTATAGGAATTGAAATCTAGATTAATATTAGATCTTCTTCAAA
GTAGCACGGTGGTATGAGGTGGAACCCCAAGGCGATACTCTAATTACTTT
AATGTTGTCCACACAATGTTCAAGCTACAAATTGGTGAAAGCTCCAAGAA
TGGTAACACACAAAACTTTATACAATTTTTGACAACCGTTGTTTTTCTGA
CAACCGATGCTTCAAATTACCTTAGAGAAGATTCATACGAAACTATAGTA
ACTAACTAGGACACTTGAAGATTGATTGAGTGAGTatgttttgtagaaat
aatATCAGAAGTAAAAAcccttttaaaatattttaaaaagtattatttGA
AAAGGTATAACGAAATGTACAGTTATAATTTATggacaaagaaaatttaa
aaatctgtgAAAGTC
Run BLAST on NCBI

transcript from alignment at sc0000021:538483..542338+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002630 ID=TCONS_00002630|Name=TCONS_00002630|organism=Clytia hemisphaerica|type=transcript|length=3856bp|location=Sequence derived from alignment at sc0000021:538483..542338+ (Clytia hemisphaerica)
ttttgaatgttCGCGAAACAAAATGGCGTGTGGTTGTAGATTATTGCTGA
TTTCAACAATCGTAATTCTTGCAGAATGGTGCAAAGCTTTCCCAGgttat
ttgaaagattttttctgaGCCTATTAAAAAGAGTGCTTCATCTTGTTAGC
TAGACCGAAGGATAGAGAGAGCTCAAAGCTATAGGATCTCTTTTTATAAT
CCTGTCTCAGTGAACAGAATTTGCAATCTTATCGGCAATCTTATTTTAAT
TGTATTTCCAGATAGAACTCTACAGATCTATGATGCAGATATGTCTTACG
AAATGTTGACTGGATCAGTAATCAGTTTAAGTTTTTATCGATTAAGGGCT
TGCCAAAaccaatattttattttatattttataaccAGTAATTTTTTTCG
ACCtctaatcttttcaaaaatatttcagccTCGAGATTCATTGGAACACC
AAATAATCAAAACTATGTTCGATCACAATTCCCTAGAATGCCTTCAGAAG
ACAAATATTACAACAATTGGAAAAAATGGGCAAATTCTGAAGAAATAACA
CAATGGCAGCGTTCAGCCGTACCATACGGAGGACAAATGGAAGACACCAA
AAGATTCTCCNTGGCAGCGTTCAGCCGTACCATACGGAGGACAAATGGAA
GACACTAAAAGATTCTCCATGCAAATACCGTTAAATGATTTAAGAACTTT
ATACGGCTCGTATGATTTAGTACAAGCTGCAGAAAAAAAAGCAGCTATTG
TTCAGCCAATATATCAAGGTCAATCTCCATTACAAGCATACATTCAACAG
CCTTCATATCCAAGTGTGATGACATTCATACCGAATATGGCATTCCAAAA
AGCTGACCAAAGAGGTGATATCATTCAACCAGAGATTCGACAACAGTTAT
CACTACCTCCACCTAATATCCCTTACGATCCAACCGTTTTGGGAATACCA
CAGAATCCAACTCAATCTTGCCAAGGATGCAATGGTGATTGCAGTAATTA
CCTTTGTTATGGATGTGGTGGTTGTCCAGCTGATGGAACACAGAAACCAC
ATTATATGTATCCCTACCAAAAACAGGATTCAGGTAATTCTGAGGTCATG
TTCGCACGTAATGGTTCCGTTTGATCCGTAACTAAAtgagccattctatt
ggttagaagtggcgtaaaacttgaatgtaaccaatagaatggcttcattt
cgtttcggatgAAAGGGAACCGTAGCGTGTGAGCGTGgtctaaatttcaa
ttttcaatctcTTACCCAGAGCCATTTTTGCCAAAATAGGATTTTACTGG
TGAAGGTGTTACAGCCTTTCGTGGGTGCCGTCAAGATTTTTGGCTTTTGC
TTAGTCAGTCTATGTTCTTTTTGTCTGTTATAGTAAAAATCCGCTTTTAT
CACTAACTTATTTACTAGTTCTcagttattttttttatttttttccaggc
TATCATGATGCTTTTGAAAGTCATGCAATGGATTTATCTGGACTAATCAT
ATCTCCAGTTCCTCCATTACCGAAACGTATGCAACCAAAAGGTATTTATT
ATGATAGAAATTAAGGTTTTAGGATAGGATAGGTTTTTCGAATTGCGCAT
ATCGGTAAATTATTTGCCACATTCATTGCATTTAATCCAAAAACACTAAT
CTTTTTTGCAGTGACTCATTCATCCTCTCGGTAAAGCATTTACCACGCCC
AttacattaactctaaaaccaCCTCTACCTTTTTTGCATTGGCTCGTTCA
TTCGTCTTCTCAAAATATTTACCACACACATTACACATTACATTCGAATT
AGGATTGACCCTCTAGTATTTTTTTAGTTCATTATCCTCTAGCTAAAGCA
TTTACCACATCCATAACATTCGATTTAAGATTACCCTCTAGATCTTTTCG
TGTTGTTTCATCATCCTGATCATCAAAGTATTTGCCACACCTTTacattt
aatttaaaaaataacctGTAGTTTATGCATTGACTCGTTCGTCCTCTCAT
CAAAGCATTTACCAAACACTTTGCATTCGATTTGAGATAACCCTCTAGAT
ATTTTTTGTATTGGTTCATCATCCTTTAAGCAAAGCATTTACCACGTACA
atacattttctttgagattaCACTCTAGTTTTTTTGTATTGTGTTCATCA
AGGTATCTACCACAGCCATTATATTCGATCTAAGATAACTAACATAGGcg
aagcgagataccctgcaaaatttatgagggagtgcagacgtttatgacat
attcattatcttttgataaaacaaagacaataattacagtgtcgtaaaaa
ccacTCTCATCCATagattttgcagggtatctcgctaagCCTATGGGTAG
CCTCCTACCTATTTCGCAATGACTCGTTCATCCTCTCATCAAAGCATTTA
CCACACACATTAGATTCGATTTGAGATTACCCTTTAGCTGTTTCTATGTT
CGTTTATTCTCCTTCACAAAACATTTACCACACACATGCGTTTTTACATT
CGATTTGAGATTACCCTCTCGCTTTCGGTTTGTCGCTCTGGTCTTTTCTT
ctatttcaacaatttttctaTTCGAGCTTTCAGGATCGGTTCTATTTGAA
ACCTACCTTAATGGATACTGTAGATTCGTTAGGGTGAAGCACTTACCATG
AACATTacatttaaattgaaaaattttgcatCATCTTGTAAATAATTGTA
AAACTGAAGCATCTGTTATTTAAGATGAATTTTGCATCACTTGTAAAATA
TTTCAACACGTCGTGTAAAGATTTTCACCTCTAAGAATCAGTTAGATTGA
AAGTTTGACATCTAACACATACGATAAATTcactatacacgtttttttta
taagaacatccaaaattttggaagccTTCGTCAGAtttaacattttgagt
tttaagcttaaaaatgttctcagcATGTccttattttgatcattttgtga
atatttttgtccattttcctaagaagaagggtgtttttgagaccacaaag
ccttaaaatgttcttaacttgtttttaacattttggccatcgaagcatta
tgttcttatataaaaagtatatgcaaaaaaaaagaaacctttAAAAATCC
TTTCTCCATTGTAAAGAGGAACTTATCTTAAATCAGTTAAGTTAAAACCC
TTCTAATTCCACCGTATTTTTTTCCCTTTCACAGGCAAACCACGACCAGG
GAAATCGAACACTCCTGAAGATGATGACGATAATGATGATGATAACGATG
ACGATGAggacgaaaacgaaagtgaaagtgactcCGACGATAACGACAAT
GACGATGACGACACAGTCGATGATGAGTCGGCTGCCGATAATgtaactga
aaatcaaacaatgaaCAATTCCTCTTCttcaaaattgaagaaaatgaaga
aaacaaatAAATCGAAACAAAGACATAAAAAAAAGAACCGCTAGTTTGTT
ATAGGAATTGAAATCTAGATTAATATTAGATCTTCTTCAAAGTAGCACGG
TGGTATGAGGTGGAACCCCAAGGCGATACTCTAATTACTTTAATGTTGTC
CACACAATGTTCAAGCTACAAATTGGTGAAAGCTCCAAGAATGGTAACAC
ACAAAACTTTATACAATTTTTGACAACCGTTGTTTTTCTGACAACCGATG
CTTCAAATTACCTTAGAGAAGATTCATACGAAACTATAGTAACTAACTAG
GACACTTGAAGATTGATTGAGTGAGTatgttttgtagaaataatATCAGA
AGTAAAAAcccttttaaaatattttaaaaagtattatttGAAAAGGTATA
ACGAAATGTACAGTTATAATTTATggacaaagaaaatttaaaaatctgtg
AAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001421XLOC_001421Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002630-exon-sc0000021-1491911889:538483..538577TCONS_00002630-exon-sc0000021-1491911889:538483..538577Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1510915933:538483..538577TCONS_00002630-exon-sc0000021-1510915933:538483..538577Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1575043694:538483..538577TCONS_00002630-exon-sc0000021-1575043694:538483..538577Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1491911889:538911..539565TCONS_00002630-exon-sc0000021-1491911889:538911..539565Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1510915933:538911..539565TCONS_00002630-exon-sc0000021-1510915933:538911..539565Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1575043694:538911..539565TCONS_00002630-exon-sc0000021-1575043694:538911..539565Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1491911889:539931..540023TCONS_00002630-exon-sc0000021-1491911889:539931..540023Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1510915933:539931..540023TCONS_00002630-exon-sc0000021-1510915933:539931..540023Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1575043694:539931..540023TCONS_00002630-exon-sc0000021-1575043694:539931..540023Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1491911889:541667..542338TCONS_00002630-exon-sc0000021-1491911889:541667..542338Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1510915933:541667..542338TCONS_00002630-exon-sc0000021-1510915933:541667..542338Clytia hemisphaericaexon
TCONS_00002630-exon-sc0000021-1575043694:541667..542338TCONS_00002630-exon-sc0000021-1575043694:541667..542338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:538483..542338 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.579034	0	8.08276	8.13035	5.28364	3.36268	3.74341	3.68666	13.0338	11.5845	8.95534	18.7739	15.2315	12.3397	0.0173325	0	7.67784	7.66717	8.03146	5.05657	7.93977	8.17954	0.912208	0.42139	0.0904537	0.0307193
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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