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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002617 ID=TCONS_00002617|Name=TCONS_00002617|organism=Clytia hemisphaerica|type=transcript|length=2427bpRun BLAST on NCBI protein sequence of TCONS_00002617-protein >TCONS_00002617-protein ID=TCONS_00002617-protein|Name=TCONS_00002617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=621bp MNLFKTWLLALLMSLMVTASSAKSLSSETDWEERLEEEVEILRTLREEIERun BLAST on NCBI transcript from alignment at sc0000021:407448..419325+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002617 ID=TCONS_00002617|Name=TCONS_00002617|organism=Clytia hemisphaerica|type=transcript|length=11878bp|location=Sequence derived from alignment at sc0000021:407448..419325+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000021:407448..419325+ >TCONS_00002617 ID=TCONS_00002617|Name=TCONS_00002617|organism=Clytia hemisphaerica|type=CDS|length=31722bp|location=Sequence derived from alignment at sc0000021:407448..419325+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002617 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4) HSP 1 Score: 107.071 bits (266), Expect = 2.015e-24 Identity = 90/289 (31.14%), Postives = 134/289 (46.37%), Query Frame = 2
Query: 737 ILGNEIKKEDASDQGKHIPDETDID--QKSGTNEILGNGTKKDGSTMTEVEINELLGYEGDEMILSEEQQKRGVSTSIRLWRDQNTGVIHIPYEIDSSIASSDHPKILRHISEMNEAIRCSQEAWKPKTPQDKH-YVLFRNSAGCSSYLGITKFQDSKDPSKTYQPISLAAGCIRFNQGTVLHEMLHCMGFSHEQSRSDRDEYVTINWSNIIANRERNFQK--VSNMMDGSKETDYDYGSVLHYGRNSFGKTVNGVKQETITPKDSNAA-IGQRNGMSKLDIEELNLIY 1585
ILG + A G PD + Q SG +I G + E + L EGD + R +S + W +GV+ +P+ + S IL ++E + C + T QD+ ++ GC S +G S Q +SLA C++ +G VLHE++H +GF HE +R+DRD Y+ +NW+ I+ E NF K SNM+ T YDY SV+HYGR +F + G+ TITP + + IGQR +S DI + +Y
Sbjct: 21 ILGAPLASSCAGACGTSFPDGLTPEGTQASGDKDIP---AINQGLILEETPESSFL-IEGD---IIRPSPFRLLSATSNKWPMGGSGVVEVPFLLSSKYDEPSRQVILEALAEFERST-CIRFV----TYQDQRDFISIIPMYGCFSSVGR---------SGGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIKSQSSNML-----TPYDYSSVMHYGRLAFSR--RGLP--TITPLWAPSVHIGQRWNLSASDITRVLKLY 279 The following BLAST results are available for this feature:
BLAST of TCONS_00002617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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