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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002613 ID=TCONS_00002613|Name=TCONS_00002613|organism=Clytia hemisphaerica|type=transcript|length=174bp
AAGAAATGTGATCTCAAAACGAAGGTGTAATGGGACGACGATCGTTGGTA
TATGAGAATGGTGAACAACATAATCACTGACGCTGCCTACCAACGTGCGT
CGAATAGCACCCAGTCCTCTCTGTCCAATAATAATGGTAGACGCGTTGTT
ATCTTTGGCTACTTTacaaatagt Run BLAST on NCBI transcript from alignment at sc0000021:299567..309007+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002613 ID=TCONS_00002613|Name=TCONS_00002613|organism=Clytia hemisphaerica|type=transcript|length=9441bp|location=Sequence derived from alignment at sc0000021:299567..309007+ (Clytia hemisphaerica)
AAGAAATGTGATCTCAAAACGAAGGTGTAATGGtaggaatctcgattttt
ttaaaacttttctctTTTCCACATTAAGCTATCCCATCTAGATAGTGCTT
ATGGTTTTATTACATTAGTAAGGTCATGTTTTTGCCGAGAGCTCCAAAGT
TGAAAAAACAAGATCACTTTTTCTAAATTACAGCTTTAAAAAATGTGTCA
TTCCATTTTTATCTCAGTttcttaaattgaaaaattgaaagagaaaaaga
gaaaggAAGTCCAGAATgattttttctatctttttaccCCTTTCTCAAAG
AATTCTCATAATATACAtccattttttttcattctgcTGCAGTTGGCCTT
ACGGGATGGCCTTttactatttaaaaaaatatgcttGACAACAAACTAGT
ACCCTACTGTAGTGAGAAAAAGAGTCATCCCACTGGAATTTCATAAAACA
ATTTCACCcatttgaaatatcaaaagGTTGACACAAAGCCATGTTGCAga
tcaactttttcaaagagCCTTAGTAGAACTTTGAAGTCAATGGAACACCC
CACCACTAgaattagaaataaaaattaagaaattgatAAACACTGAGTAA
ACCATAAAGAGAACAAACAACTTTCCTGACTTTCTGTcaagattttttgg
aaatagatAGTCTGTCAGAGGAACTGAACACACCAACTATAGTCTCTTTT
TTTATCAGTTGGGGAATATGCCTTGATCAGGATACAGATAAATAAAATAT
CTGGGTAAACCTTAAGTCCAGGAACTATTAAAAATGGTATCTTCTCAAGT
GTCAAGGACAATGTTGGTTGCGCTATAAAATGCTATAAAATCTTTGCAAG
TAAAGGAGGCAAAATAGAGGTTAGGATTAGATCATCattcatatcaaatt
tttttactgaCTGAACTAACCAAACTCTTATTGCTTCCaaattgtgagtg
ttcaatTAGggttgaattaatttttttaatcaaactttttgatcaaaata
aaaactGCAAACCTTCCCAGGCGGCGTGGCTACAAAGTAATAGGGTCAAG
ATCAGAATCTCGAAAACTTAATTCAGAGGAATGTTAAGagatactctagg
ggctgagttaggtcccgtatgcgcatcggcgtatagtcattttttctttt
gatcaggaacgtatagtccttgaagagtcagaaaacgtgtgtggcgctat
ttggatcaggctcaaatttccataatggcggattttagatttcaaccctt
tttagccctcttgcttgaaaagaaccataatggcggattcaaaattttct
ttcgtcacatgggctcttaggctctgctaggctaagaaaaatattttttg
agcttaaaatcCTGCATATTATacaccaatcgatcagaaattttatgctg
attaagaaaaaggtcagtaagtaagccaatcaaatttttctatctcgagc
tatgaagtactttcgttttcaaaacttagaaaacgtaagtacttcgtatc
tcttgataacgaaattttcagaccatagtTCTGANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATTGGtgtataatatgcagggttttaagctcaaaaaatatttttctt
agcctagcagagcctaagagcccatgtgacgaaagaaaattttgaatccg
ccattatgaatttcgaaattcatgtagaaaaaaaaattttcctgaattAT
ATTATTTAAACGGTAGGCAAggccctccgaaaatttcaagtaaattaagt
aagccaatcaaatgttaaagCCACccaaatctggaaccaaaagtagtcat
ttcaaaaaatcgaaatcgaaagtgcttcatatctccagataacaaaattt
tcagatcatgattctgacctttttcttaatcagcataaaatttgtgatcg
attggtatataatatgtctatgtttaaagtcaaaaaaaaatttcttttca
agcaaGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAcgcgttt
tctgactcttcaaggactatactttcatgatcaaaagaaaaaatgactat
acgccgatgcgcatacgggacctaactcagcccctagagtaagaTAGAGA
AACAGCTTTCTCTGATTACTCAAAATTCAACGATCACTTTGATCAATTGA
TTagggtcattaaatgaaagtccagaaaagacggcttgTCATACAAATCG
GTTTCAACTTCTTCGTACGGATGAGAGTAGATCTTGTATTTTTCTATCTT
TGATCTAGAGTTTTCTGGATTTCTGAACCTTTTGGGTGTTTCTAAGTTGG
ACTTGGAGTTGgacaattttgatatttttaaatttgccaaagttgagtTT
CCAACCCACACATGAAGAGTACCCTTGATTCAGAAGCTCTGTACGCTACC
AAAAGACCACAGAAGCCACGGCAGATGTCAGATTTCACAATCTATTTata
gtgtgtattttacagacctatatatattatatatagtcaaagaagtattg
aaccttcaactattcaaaaaatgtaataaacaaaaagagacaaaacaata
ccaacaagaggacacaacaacacaacatgcTCAGGATGAATATTCATAAA
AAGGAAAACAGGTATGTGATATCAAATGATGACAAAAGATCTAAACAATT
TGTACATAATTCTGATGGAATAGAAAAACAGAAATGGGAAAATGGTGTAT
TCTTCGGAAGTATATCTCAAAAAGCAAAAATGCACAGCATGATCTAAATC
GACCAAAAGGAAAGAAGCAACTCAAAgtgagaaaaagtaaaaataaacac
aaataaaagTGACTCAATATGAATcaattaaatatattcaaagaaaacac
aaactctgttcttcagttttcaacctacataggatttcggccattttcGA
AAATATCCTCCCAAATGATATAAACCGGGTAATGTAGGTAGGCCTATCAA
TGACCCTAACTGatcctgaccctaactgatataAACAATTTTCACCCATT
TGGTTCGAAACGCATGAGACAGGACACAGgaggcaggacacaggacgcag
gtcagTGCTGATAGGTCAGCTTTAATTGCtgtaaaagacaaagaaaatgt
ttgaaaaacactgtttgTAATCGTTAGAAATATCATTCTGAATGTATTTT
ATTGGTCTAGAACCTTTTTATAGGTCAAAATCTATCCACATGCTTGCCAC
GTGCTTTTGCATTTTGTGCcatgtataacacggacctgtaatacttgtat
tatacaTTACACATAAATCACGCATGTATAATagcagttatcttttcaat
gttattggCATGTtacatatattatatacaaaatacatgtgttaaaaata
tttatctcatctttaaacagccccctaaaatagctatttcacattTCGCt
atatcatatctcattatatctcctgcatcaccttgggtacaaaaattgac
taaaatagcgtcaaaggtttgtattttattaatatatcaatatttttatt
ccaTATCTcgtatttttcatgaaaataacgtcactattttcatatctcta
aaacacctctcttggagcatttaatgttttcaaaatatataaatctaTAT
CTACTTGCACCATCAGCAtcacgacccacggcatggcccgaacatgtttg
ggcctgttcggaccatgctcgggccacaaaaaagtattattgaatcggcc
cgaacattttgtttgGaccatgttcgggccatgtatttacaattgatacg
gatttgctttacctttcctggtttatcatcatccattgttaaatattttc
attagacaaattcaaagttccaataccagtttgattcacaaagttgtata
acagtacaaaaaacgatccagaaaaattctgcttcgaataggagaagacc
acgagaaaagggaacgtgataaaaagaataaaaagaagaccattatgtaa
gattcaaatcattctttttaataattttcccaacttaattggaaaataga
tgattaacttttatatatgaacaatatatatttgaataaagatgaagatt
tttaaatttgtttgctaaaataaggaatttaaaatataaatattgggtcc
tgaaattacacgcgcgatcgtagcaagttttcaaaaatttggcccgaaca
tggtccgaaactgcgcgggcccgcgcgggccatttttaaaaagtattact
caagaggcccgaacatgttcgggccatgccgtgggtcgttcagcatccta
ttgagcatgaaaaaacattttgttgtaaaCTGATGTACACACCTTGTATT
TTGTGATAACGTCATCATTTACACAATTTaaatgtcattttgtcaatatt
tgggattaaaatcttctaaatagcgtatttattttgtataatatataatt
ttccattgcgtataatgtttttagaaacattttatgAATTATATGTTACA
AGTGTGTTacaattttccggtctgtagtttgtatgacctgcgtcctgtgt
cctgtctcttgcgtttcgaaccaaccgaTTTTCACCCGTACGgatttaat
aacaaaaaatctaCTTTCACCCATAGCCATTCAAAGAAGTCAGCACCATT
CGAATCGAACAGTTTCTTCATGATTcaatttgacattaaaaatgaatgtt
tgtttttcctttttcaccaatagttcaatttttttagaataagaagcaat
ttttttaccaatgtataccAGACGTTACTAATCGATAAAATCGATTATCG
ATTAAAATTGATAGTTAATCGATAATTAATCGATTTATTAAAAAAGATAA
TTGATAGctaaggcggtcatcgaaaaaatgctctgtttgcgtcgcaacag
gtgttaaaaatgcatgcgggcggacgggcggtaAAAAACATTcccaggtt
ttttttaatcacgccaataactcaggggcgggtggtaacgcgatcaaaac
attttttcgatggtcgtcagagcaattgagaaaaaagctatactttaaaa
gaacaaattgcctttcccagatttttttcctcatctccgcaccggaaaat
cagcggaaaatttgatgcgggcgggtgacgcgaatagaacaatttttcga
tgaccgcctaatcaatactcacaattttttagcactcaattgaatagacc
ttttttcaaagaggccaccctgttgaataaattatgtagtccagcagaaa
aacaatgataagaccatgcataattattacaatatgcatgatacagtaat
tatgcatggctctatcattgtttttatggctggactacataattattcaa
caggacgtcctctttgaaaaaaggtctattatcaccatagatttttaatc
gataatatcGATTACAGTGTTAATAATTGATAATATCGATTAACACAGAT
TAACATTGATATAATCGATACCTCGACCctatcgatttttaatcgattat
atataattgatataatagatatcttatatctgatcgatataatcgatact
cacaattttttaggcgccgattatttattaattttcgtttttaatcgata
tttaATCAATTGATTaatataatagacctttttttaaagaggcagccatg
ttgaataattatgtactccagcataaaaacaatgatacagccatgcataa
ttactgtatcatgcatattttaaaaattatgcatggctgtaggtatcatt
gtttttattctggagtacataattattcaacatggttgcctctttaaaaa
aaggtctattatcgattagctattggttttaatcgataatcgattttatc
gattagtaacgtctggtgtatagcaaaagaaattcttaatgcaatgatat
taaattgattcttgtaaaactgtcagaaattGAGTAAAATCAAGATCAAG
TTATAATTTTCTGGAGCTTTACATATAATATGGTGCCGTCATGATGCGGt
taggggccgtcgacattcgactttcgaattttttaacggcatttggccgt
tatggttctgaccccctcccccccctctACGTTAACGGCCATCAAAttct
ctaaagttaaaaaaatgtcaaaaatcaatgaaactctaaattttctcctt
cactttcatcgttgtttcgtcagccatctttaatatcGCTACGGCTTCGC
Tcagtttacatttaaaaaataacggagataattttaaaacttttttccga
aagtcgcgcgaattaattatctccgtagtcataatcaaaagaatagcggc
atttcaaagaaaaaagaccgaccgtctgcgaaattcaagggccgcgAGGA
CCGTCTAAGTCCGTCTAAACAAATGGAACACGAAACATAAACATCgggtc
gtttgttttggttaaaatcattctaaaaaaTAGCTAAGTGAATACTTCAG
GTATGTGACTTTAGCAGATCTTAGTtgataaaaggaggaaaagaaatatg
ggaagtaacatttgtatggaataaacgactcaaaaatcaatattttctgg
tgaaaagaattgatatgtggtgagttgacccctaaagagattttcgacct
tcccttaacggcacatggtcgaccccctcccccccttaacggccaaatgc
cgttaaaaaattcgaaagtcgaatgtcgacggccccttatatcagtagaa
tatcgctaggaaattctcagcaagaagatataggtaccttttcgtataag
TGAGATGTACCCAAAATATGTAAGCCGTAAAAGTTTGTGCATAATCAGGT
GTCACAACACGcaatcaacaacaaaagaaacctattaaTTCAACTtataa
gggcaagagacctgatggcaagccgtttttccattccattgttttcaaga
aactgttttccatctctttacattcctttGCTTTACAGGTGTAATACAGT
ATCTAATTTCTTGCTCCGTTTTACTTGCATCCACCACTGAAGTGAAGTGT
GTGGGGTAATATTAAAGAAGGCTTAAGTGACATTTAGAGCAATGGAGCGT
GTCACGGCCATCCCTGGCAAAAAAGTAACCTGTTCACTTGATCTTTATTT
TTGATTCCCACGAGATAGGAATTCTTGGAATAAGACAAGAAAACCCAGTC
CACAACACAACACAGCACAGCAATCACTCAGTCACTGGCTGACTGGTCAC
TGATGATAAAAAAGCACAgtttttgatcttttttatgACCGCagagaaaa
atgttttctttttgctCACTTACACAGACTATTTAGACATTTGTTTGGAT
GAGATCGAAAAACCATCGAGTCAAAACGTGTCTACCGGACTACAGTCACC
AAAACAATCTTTAAAAGCGTGGAAAAATATCATTATTCCGGGATATGTCC
GCAGTTTGAAGACTTCCGGAATTAGCCGGCGACGATGACATTCTtgatat
tcttgatatgcgtcaagatgacgtcatatttttaacggaagcacccaaaa
aagccggtttttgacctctgtgtttctatttttagtaacagagagaggtc
aaatctcggcttttttagggtgtttccgctagaaaaatgacttacgcata
tcaagaatgaCATTGGACGTTGTTTCGGCTGGAAATCTCGTACACGACAG
CTGGGCGTAGCAAGCAGAGCCTGTTTTCAATCTTATTACAGATAGAAGGT
CCGTTTTGCccgatttttttcaaacttcactAGTACAGTCAGTTAACACC
ACTTGATGCAAAAGGAACAAGTACACTTGCGGGGAGGGAGTGTATGCGAT
TAAAAGACATTTCGAAACGACAGTTTTGAAGAAATCAGGAAAAGCCTGAA
AGAAAGAAATCTTAACACCTTTTGGAAGTACACACAGTGATAAGCTTTAT
CAACTTCCATAGTTCTGTCGGGTTCTCACTTCCGAGCAAAAAAAGTGTCG
ACGTTCGTTCTTCCCCACAACCTTgtgcccgtgtatcccaggctttattt
acactactgatggacgccagagaattatCTAGCGCCAGAtagttaaagca
taaaaaagctgataatgcgcagggaacgaggttgtctTTCCCAATCAAAA
AGTTAAGTTGTCCAAAAAGGTCCGGTAGTTTTAGTGATTCCACGGGGATT
CCACAATAAATTTATTATCCCTGGGGAGCCTGCAAGTAACAACTCTACGA
ACTCGTCGGCGGGGCACGGCGGGTTTGTatgtataaaataaaaaataaac
atatttCGGCAAAGAACTGatctatttgaaatatttctaaattgatgaat
caaaagttatgactattttctcaagaaaaatagggatgaaaaattagtca
aaaagcTAGctactattttcaagattttgagacaatgaagcttttacaaa
aatgaagtaaagatacaccatctaccgcaaaaaagaatttaaataaaAGC
CATCATGGTTTTtcttcttcgccgaaaataaggtcctcGATACGTACTTT
TTCGAGGTTCACTCGCCAATAGTAAGAAATTCATTATGGTCctttaaatc
caaaaaaataaaattgcttcACCCGTACCACGTGAATGTTTCTTTCAATT
TAAATTGTCTCCTTTTTGTGGTAagtattgaaaattatttccaCATAACA
AACAAAATATCAGTGACTACGCATCATCATGTAATGCATAAATTATCTAC
GAGTAACATTTTACCAGtataataccttatcggccgaaacttagtcggcc
ctaagtgactaaattttggcttggtgactaaaattaaggccgactaagaa
tttgggccgactaaaatttgggccgactaaaaatttagaaatggccaaaa
cttagttaTAAGCCGGCCCtcagtgactaaattttgacgaggtgactaaa
attggggccgactaataattaagaccgactaagttttggccgataaggta
aataAGCACTGCAATGTTGCGTCTTCATTATCTATCAATAAAAATTCGTT
AAACCATCTCCCATTTCATCCCcccatttttttatttattgagtTGCAGG
GACGACGATCGTTGGTATATGAGAATGGTGAACAACATAATCACTGACGC
TGCCTACCAACGTGCGTCGAATAGCACCCAGTCCTCTCTGTCCAATAATA
ATGGTAGACGCGTTGTTATCTTTGGCTACTTTacaaatagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002613-exon-sc0000021-1491911889:299567..299598 | TCONS_00002613-exon-sc0000021-1491911889:299567..299598 | Clytia hemisphaerica | exon |
| TCONS_00002613-exon-sc0000021-1510915933:299567..299598 | TCONS_00002613-exon-sc0000021-1510915933:299567..299598 | Clytia hemisphaerica | exon |
| TCONS_00002613-exon-sc0000021-1575043694:299567..299598 | TCONS_00002613-exon-sc0000021-1575043694:299567..299598 | Clytia hemisphaerica | exon |
| TCONS_00002613-exon-sc0000021-1491911889:308866..309007 | TCONS_00002613-exon-sc0000021-1491911889:308866..309007 | Clytia hemisphaerica | exon |
| TCONS_00002613-exon-sc0000021-1510915933:308866..309007 | TCONS_00002613-exon-sc0000021-1510915933:308866..309007 | Clytia hemisphaerica | exon |
| TCONS_00002613-exon-sc0000021-1575043694:308866..309007 | TCONS_00002613-exon-sc0000021-1575043694:308866..309007 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:299567..309007 + |
Blast
The following BLAST results are available for this feature:
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