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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002600 ID=TCONS_00002600|Name=TCONS_00002600|organism=Clytia hemisphaerica|type=transcript|length=1815bp
caggaaaaagaagacattcgaATCACTATTTCAAAGATAGATCTCTCAAG
gaGCTGGACGCTATCTTGAAAGTTGGAGACAAGATTTTGTAGATAAGATa
tccactgggaaattgaaaGTTATTTATCATATAAAACAGACGTACTTATT
ACCTCAGGAAAATGACATCTAATAACTCCTCTACGCTCGTTACCGCCCTC
GATACACTCAACACCACCCTTCTACCGCCAACAGCCACCTGTTTTCATAT
CATGGACGAAGCAAATATGACACCTCATTTTAAAGTCACCTACATCACCA
GTTTGGCAATCTCCTTCATTTTTATCACCATTGTGAATATCTTCCTCATT
ATCGGTTTAAAACGGGCCTACGCCAAATTGACATTATCCAAAAAATTGTT
CCTGTATCTCTCAGCTAGTGACTTATTGACAGGACTTGTAACGATACCTT
ATCAAGGAGTTATGGTAATATATGGTTCTAGTGCATCTTGCTTCCAAGTC
CATTTGCAATCTTTTACCAATACCTTTACTCCTGGGTTATCAATGTTTAT
CATTCTAACAATCTCCATTGCAAGATATATCTCCGTCATCAAACCTACAT
TTTTCAAGAGTCATGCTAACAGCTCATGGGTATCTGTTTACATGTTTGGT
CAAATTGTTCTGGCAGGTGCAGGATCTATTTGGTATTCAACCGCTACTAC
GAGTATACATTTAGGGTCTTACTTGATTTTTGTGACAGCCTTGTGTATTT
TCATCATTGGAGGATCTATTGTTCTCAATGTGTTCTTGTATCTTAAACTA
CGGTCATCGCACAGTTCCACAAAAAAGGATTACCAAAAAGAAGTCATTAA
AACTTTGATTATTATCTCCGTCATATTATCTATCTGTTTTCTCCCTAATG
GTGTCGTATTTGCGTTGGTCGGCTATTACATTATAGCGGACACTGATAAT
ATGGAGTTATACACAAAATTGATACCCTGGGTTTACGTACCGATCTTATT
AAATGCTGGCTTGAACTCTTGTGTTTATATTTGGCGTGATAAGAAAATCA
ATCGTTATTTAAGGAGATCGATCCGAAATGAGCAACGACGGTTGAGTAGT
AAATGGAGTATTATATCAAGTCCAAAAACCATCACCAACAAGAGATTGGA
TGCGGTTTTGAGTGATCACACACATCGCAATTCGTCTTATGAATCGTACG
ACATCtctgaaatttagaaaattgcAAGCGAATGCTCATCAGATGAActt
tgaagaaaagaaagttGTGTGCAGAATTATTTCTCTGAAGATGACCTCTT
GTAGTGAGTTTCGAATATATGTAGTTTTTaaacaacatcaaaaacatgaa
gcTTCTGGTTATTCTTTTTATCATGGAATTATTTCAGTTTTGTATTTCGT
TGCACATTGAAACAATAAGTCCAAGTATAATACTGTCTTTCTTTTATGTG
GAGCAGAGAACCATAACATAATTTTGTGCTTAAAACTTACACTTGGACAT
TTTGAGATGATATTATGTAGACAATGGATGCGCTAAATTACATTTGCTGT
TACGCTCATTTTTGGGAGAAATATTAAGGGCAAAGTCTTCAAGAACATTG
AAGATAATCTATATAACACAAAACTAACCAAAAAGTCTTAACATGTCAGG
TTCCAAGACAAATTTTCAGTTACTTAGAAAACCGTATTCTCTGATTTTCC
TTGgtcaaaactttttattatgAGACATTATTGGGTTCTGAGATGAAAGT
TCAACATGATGAATGAAAAAAGTCGATAAAacttatttttgtaaatagac
AAATTTCCTATCAGC Run BLAST on NCBI transcript from alignment at sc0000021:136907..139337+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002600 ID=TCONS_00002600|Name=TCONS_00002600|organism=Clytia hemisphaerica|type=transcript|length=2431bp|location=Sequence derived from alignment at sc0000021:136907..139337+ (Clytia hemisphaerica)
caggaaaaagaagacattcgaATCACTATTTCAAAGATAGATCTCTCAAG
GTATTGTTATTTTTCTATTCTTGATTTAAGATAACGTCATGTTTTCTAAC
AGAACCACTCGTAAAAAAACGGATTTTGACCATCGTGTTTCTTTATTTAA
GGAACAGAGAGGGGTCACccttttttcgggtgtttctgtTAGGAAAATGA
CTTACACAAAATGGAGAATTCAATTTCGATCTTCATCATGAAAATCTTGC
CAAGGCAAAGCAAATATTTGTCACATATTAACACGGAGATGGTAAACTTT
GATTCATGAAGCAATACTTCGTCGCATGGCAACCGAGTTGAACCGAACAA
ATTTTATTTAACATTACTAAGAtcggttttttttttgtatttttgtttat
ttgagtTTGGATTGTTTTCGTTATTTGTATTCTGTGAATCGTTTTAGCAT
TTTGCAAAGTGTATAGGTATGTTGCATACAAGctttcgcaagcagaaact
tcgcagaaaaatcgcgaaatttacgcaaaaaaataaattcgggaaaatcg
ctaaaatttctgcTCACGCAGGTATGTACGCCTAGAGCatggaaaatttt
actttgcCTCTAGAGGGAATCTCcaaatacaaaattttaaataaaagaaa
tcattttcatcaaaaggaGCTGGACGCTATCTTGAAAGTTGGAGACAAGA
TTTTGTAGATAAGATatccactgggaaattgaaaGTTATTTATCATATAA
AACAGACGTACTTATTACCTCAGGAAAATGACATCTAATAACTCCTCTAC
GCTCGTTACCGCCCTCGATACACTCAACACCACCCTTCTACCGCCAACAG
CCACCTGTTTTCATATCATGGACGAAGCAAATATGACACCTCATTTTAAA
GTCACCTACATCACCAGTTTGGCAATCTCCTTCATTTTTATCACCATTGT
GAATATCTTCCTCATTATCGGTTTAAAACGGGCCTACGCCAAATTGACAT
TATCCAAAAAATTGTTCCTGTATCTCTCAGCTAGTGACTTATTGACAGGA
CTTGTAACGATACCTTATCAAGGAGTTATGGTAATATATGGTTCTAGTGC
ATCTTGCTTCCAAGTCCATTTGCAATCTTTTACCAATACCTTTACTCCTG
GGTTATCAATGTTTATCATTCTAACAATCTCCATTGCAAGATATATCTCC
GTCATCAAACCTACATTTTTCAAGAGTCATGCTAACAGCTCATGGGTATC
TGTTTACATGTTTGGTCAAATTGTTCTGGCAGGTGCAGGATCTATTTGGT
ATTCAACCGCTACTACGAGTATACATTTAGGGTCTTACTTGATTTTTGTG
ACAGCCTTGTGTATTTTCATCATTGGAGGATCTATTGTTCTCAATGTGTT
CTTGTATCTTAAACTACGGTCATCGCACAGTTCCACAAAAAAGGATTACC
AAAAAGAAGTCATTAAAACTTTGATTATTATCTCCGTCATATTATCTATC
TGTTTTCTCCCTAATGGTGTCGTATTTGCGTTGGTCGGCTATTACATTAT
AGCGGACACTGATAATATGGAGTTATACACAAAATTGATACCCTGGGTTT
ACGTACCGATCTTATTAAATGCTGGCTTGAACTCTTGTGTTTATATTTGG
CGTGATAAGAAAATCAATCGTTATTTAAGGAGATCGATCCGAAATGAGCA
ACGACGGTTGAGTAGTAAATGGAGTATTATATCAAGTCCAAAAACCATCA
CCAACAAGAGATTGGATGCGGTTTTGAGTGATCACACACATCGCAATTCG
TCTTATGAATCGTACGACATCtctgaaatttagaaaattgcAAGCGAATG
CTCATCAGATGAActttgaagaaaagaaagttGTGTGCAGAATTATTTCT
CTGAAGATGACCTCTTGTAGTGAGTTTCGAATATATGTAGTTTTTaaaca
acatcaaaaacatgaagcTTCTGGTTATTCTTTTTATCATGGAATTATTT
CAGTTTTGTATTTCGTTGCACATTGAAACAATAAGTCCAAGTATAATACT
GTCTTTCTTTTATGTGGAGCAGAGAACCATAACATAATTTTGTGCTTAAA
ACTTACACTTGGACATTTTGAGATGATATTATGTAGACAATGGATGCGCT
AAATTACATTTGCTGTTACGCTCATTTTTGGGAGAAATATTAAGGGCAAA
GTCTTCAAGAACATTGAAGATAATCTATATAACACAAAACTAACCAAAAA
GTCTTAACATGTCAGGTTCCAAGACAAATTTTCAGTTACTTAGAAAACCG
TATTCTCTGATTTTCCTTGgtcaaaactttttattatgAGACATTATTGG
GTTCTGAGATGAAAGTTCAACATGATGAATGAAAAAAGTCGATAAAactt
atttttgtaaatagacAAATTTCCTATCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002600-exon-sc0000021-1491911889:136907..136956 | TCONS_00002600-exon-sc0000021-1491911889:136907..136956 | Clytia hemisphaerica | exon |
| TCONS_00002600-exon-sc0000021-1510915933:136907..136956 | TCONS_00002600-exon-sc0000021-1510915933:136907..136956 | Clytia hemisphaerica | exon |
| TCONS_00002600-exon-sc0000021-1575043694:136907..136956 | TCONS_00002600-exon-sc0000021-1575043694:136907..136956 | Clytia hemisphaerica | exon |
| TCONS_00002600-exon-sc0000021-1491911889:137573..139337 | TCONS_00002600-exon-sc0000021-1491911889:137573..139337 | Clytia hemisphaerica | exon |
| TCONS_00002600-exon-sc0000021-1510915933:137573..139337 | TCONS_00002600-exon-sc0000021-1510915933:137573..139337 | Clytia hemisphaerica | exon |
| TCONS_00002600-exon-sc0000021-1575043694:137573..139337 | TCONS_00002600-exon-sc0000021-1575043694:137573..139337 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:136907..139337 + |
Blast
The following BLAST results are available for this feature:
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