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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002599 ID=TCONS_00002599|Name=TCONS_00002599|organism=Clytia hemisphaerica|type=transcript|length=1764bp
CATAAAGAAGAAAGAGTCACATTGCGTTCGCTTATAATACACCATTTATT
TGACATcaggaaaaagaagacattcgaATCACTATTTCAAAGATAGATCT
CTCAAGGAAAATGACATCTAATAACTCCTCTACGCTCGTTACCGCCCTCG
ATACACTCAACACCACCCTTCTACCGCCAACAGCCACCTGTTTTCATATC
ATGGACGAAGCAAATATGACACCTCATTTTAAAGTCACCTACATCACCAG
TTTGGCAATCTCCTTCATTTTTATCACCATTGTGAATATCTTCCTCATTA
TCGGTTTAAAACGGGCCTACGCCAAATTGACATTATCCAAAAAATTGTTC
CTGTATCTCTCAGCTAGTGACTTATTGACAGGACTTGTAACGATACCTTA
TCAAGGAGTTATGGTAATATATGGTTCTAGTGCATCTTGCTTCCAAGTCC
ATTTGCAATCTTTTACCAATACCTTTACTCCTGGGTTATCAATGTTTATC
ATTCTAACAATCTCCATTGCAAGATATATCTCCGTCATCAAACCTACATT
TTTCAAGAGTCATGCTAACAGCTCATGGGTATCTGTTTACATGTTTGGTC
AAATTGTTCTGGCAGGTGCAGGATCTATTTGGTATTCAACCGCTACTACG
AGTATACATTTAGGGTCTTACTTGATTTTTGTGACAGCCTTGTGTATTTT
CATCATTGGAGGATCTATTGTTCTCAATGTGTTCTTGTATCTTAAACTAC
GGTCATCGCACAGTTCCACAAAAAAGGATTACCAAAAAGAAGTCATTAAA
ACTTTGATTATTATCTCCGTCATATTATCTATCTGTTTTCTCCCTAATGG
TGTCGTATTTGCGTTGGTCGGCTATTACATTATAGCGGACACTGATAATA
TGGAGTTATACACAAAATTGATACCCTGGGTTTACGTACCGATCTTATTA
AATGCTGGCTTGAACTCTTGTGTTTATATTTGGCGTGATAAGAAAATCAA
TCGTTATTTAAGGAGATCGATCCGAAATGAGCAACGACGGTTGAGTAGTA
AATGGAGTATTATATCAAGTCCAAAAACCATCACCAACAAGAGATTGGAT
GCGGTTTTGAGTGATCACACACATCGCAATTCGTCTTATGAATCGTACGA
CATCtctgaaatttagaaaattgcAAGCGAATGCTCATCAGATGAActtt
gaagaaaagaaagttGTGTGCAGAATTATTTCTCTGAAGATGACCTCTTG
TAGTGAGTTTCGAATATATGTAGTTTTTaaacaacatcaaaaacatgaag
cTTCTGGTTATTCTTTTTATCATGGAATTATTTCAGTTTTGTATTTCGTT
GCACATTGAAACAATAAGTCCAAGTATAATACTGTCTTTCTTTTATGTGG
AGCAGAGAACCATAACATAATTTTGTGCTTAAAACTTACACTTGGACATT
TTGAGATGATATTATGTAGACAATGGATGCGCTAAATTACATTTGCTGTT
ACGCTCATTTTTGGGAGAAATATTAAGGGCAAAGTCTTCAAGAACATTGA
AGATAATCTATATAACACAAAACTAACCAAAAAGTCTTAACATGTCAGGT
TCCAAGACAAATTTTCAGTTACTTAGAAAACCGTATTCTCTGATTTTCCT
TGgtcaaaactttttattatgAGACATTATTGGGTTCTGAGATGAAAGTT
CAACATGATGAATGAAAAAAGTCGATAAAacttatttttgtaaatagacA
AATTTCCTATCAGC Run BLAST on NCBI transcript from alignment at sc0000021:136551..139337+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002599 ID=TCONS_00002599|Name=TCONS_00002599|organism=Clytia hemisphaerica|type=transcript|length=2787bp|location=Sequence derived from alignment at sc0000021:136551..139337+ (Clytia hemisphaerica)
CATAAAGAAGAAAGAGTCACATTGCGTTGTAAGGTTTGGTTTCTTTTTGA
TTCTCTGGGAAAATATGCTTTTACATTGACTTTAGTTTTTTTGCCATCAT
AAATGGTTTAAAAAATAGTCTCCTTGAACAGTATATAAGATATATAACCT
TAGAAAAACCTCAAAGTGACTTCCAGATACCAAGTATCCACCTCTCTAAA
CAtacggaaatttcaaaattcattactGATACTAGGCTAGATACTTGAGA
TATATTCTTCCCCCTTAATTTTGTTATCTAATCAATGGAAATTTCGTACT
AAtaattttattcaatctttatttTTAGCGCTTATAATACACCATTTATT
TGACATcaggaaaaagaagacattcgaATCACTATTTCAAAGATAGATCT
CTCAAGGTATTGTTATTTTTCTATTCTTGATTTAAGATAACGTCATGTTT
TCTAACAGAACCACTCGTAAAAAAACGGATTTTGACCATCGTGTTTCTTT
ATTTAAGGAACAGAGAGGGGTCACccttttttcgggtgtttctgtTAGGA
AAATGACTTACACAAAATGGAGAATTCAATTTCGATCTTCATCATGAAAA
TCTTGCCAAGGCAAAGCAAATATTTGTCACATATTAACACGGAGATGGTA
AACTTTGATTCATGAAGCAATACTTCGTCGCATGGCAACCGAGTTGAACC
GAACAAATTTTATTTAACATTACTAAGAtcggttttttttttgtattttt
gtttatttgagtTTGGATTGTTTTCGTTATTTGTATTCTGTGAATCGTTT
TAGCATTTTGCAAAGTGTATAGGTATGTTGCATACAAGctttcgcaagca
gaaacttcgcagaaaaatcgcgaaatttacgcaaaaaaataaattcggga
aaatcgctaaaatttctgcTCACGCAGGTATGTACGCCTAGAGCatggaa
aattttactttgcCTCTAGAGGGAATCTCcaaatacaaaattttaaataa
aagaaatcattttcatcaaaaggaGCTGGACGCTATCTTGAAAGTTGGAG
ACAAGATTTTGTAGATAAGATatccactgggaaattgaaaGTTATTTATC
ATATAAAACAGACGTACTTATTACCTCAGGAAAATGACATCTAATAACTC
CTCTACGCTCGTTACCGCCCTCGATACACTCAACACCACCCTTCTACCGC
CAACAGCCACCTGTTTTCATATCATGGACGAAGCAAATATGACACCTCAT
TTTAAAGTCACCTACATCACCAGTTTGGCAATCTCCTTCATTTTTATCAC
CATTGTGAATATCTTCCTCATTATCGGTTTAAAACGGGCCTACGCCAAAT
TGACATTATCCAAAAAATTGTTCCTGTATCTCTCAGCTAGTGACTTATTG
ACAGGACTTGTAACGATACCTTATCAAGGAGTTATGGTAATATATGGTTC
TAGTGCATCTTGCTTCCAAGTCCATTTGCAATCTTTTACCAATACCTTTA
CTCCTGGGTTATCAATGTTTATCATTCTAACAATCTCCATTGCAAGATAT
ATCTCCGTCATCAAACCTACATTTTTCAAGAGTCATGCTAACAGCTCATG
GGTATCTGTTTACATGTTTGGTCAAATTGTTCTGGCAGGTGCAGGATCTA
TTTGGTATTCAACCGCTACTACGAGTATACATTTAGGGTCTTACTTGATT
TTTGTGACAGCCTTGTGTATTTTCATCATTGGAGGATCTATTGTTCTCAA
TGTGTTCTTGTATCTTAAACTACGGTCATCGCACAGTTCCACAAAAAAGG
ATTACCAAAAAGAAGTCATTAAAACTTTGATTATTATCTCCGTCATATTA
TCTATCTGTTTTCTCCCTAATGGTGTCGTATTTGCGTTGGTCGGCTATTA
CATTATAGCGGACACTGATAATATGGAGTTATACACAAAATTGATACCCT
GGGTTTACGTACCGATCTTATTAAATGCTGGCTTGAACTCTTGTGTTTAT
ATTTGGCGTGATAAGAAAATCAATCGTTATTTAAGGAGATCGATCCGAAA
TGAGCAACGACGGTTGAGTAGTAAATGGAGTATTATATCAAGTCCAAAAA
CCATCACCAACAAGAGATTGGATGCGGTTTTGAGTGATCACACACATCGC
AATTCGTCTTATGAATCGTACGACATCtctgaaatttagaaaattgcAAG
CGAATGCTCATCAGATGAActttgaagaaaagaaagttGTGTGCAGAATT
ATTTCTCTGAAGATGACCTCTTGTAGTGAGTTTCGAATATATGTAGTTTT
TaaacaacatcaaaaacatgaagcTTCTGGTTATTCTTTTTATCATGGAA
TTATTTCAGTTTTGTATTTCGTTGCACATTGAAACAATAAGTCCAAGTAT
AATACTGTCTTTCTTTTATGTGGAGCAGAGAACCATAACATAATTTTGTG
CTTAAAACTTACACTTGGACATTTTGAGATGATATTATGTAGACAATGGA
TGCGCTAAATTACATTTGCTGTTACGCTCATTTTTGGGAGAAATATTAAG
GGCAAAGTCTTCAAGAACATTGAAGATAATCTATATAACACAAAACTAAC
CAAAAAGTCTTAACATGTCAGGTTCCAAGACAAATTTTCAGTTACTTAGA
AAACCGTATTCTCTGATTTTCCTTGgtcaaaactttttattatgAGACAT
TATTGGGTTCTGAGATGAAAGTTCAACATGATGAATGAAAAAAGTCGATA
AAacttatttttgtaaatagacAAATTTCCTATCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002599-exon-sc0000021-1491911889:136551..136578 | TCONS_00002599-exon-sc0000021-1491911889:136551..136578 | Clytia hemisphaerica | exon |
| TCONS_00002599-exon-sc0000021-1510915933:136551..136578 | TCONS_00002599-exon-sc0000021-1510915933:136551..136578 | Clytia hemisphaerica | exon |
| TCONS_00002599-exon-sc0000021-1575043694:136551..136578 | TCONS_00002599-exon-sc0000021-1575043694:136551..136578 | Clytia hemisphaerica | exon |
| TCONS_00002599-exon-sc0000021-1491911889:136879..136956 | TCONS_00002599-exon-sc0000021-1491911889:136879..136956 | Clytia hemisphaerica | exon |
| TCONS_00002599-exon-sc0000021-1510915933:136879..136956 | TCONS_00002599-exon-sc0000021-1510915933:136879..136956 | Clytia hemisphaerica | exon |
| TCONS_00002599-exon-sc0000021-1575043694:136879..136956 | TCONS_00002599-exon-sc0000021-1575043694:136879..136956 | Clytia hemisphaerica | exon |
| TCONS_00002599-exon-sc0000021-1491911889:137680..139337 | TCONS_00002599-exon-sc0000021-1491911889:137680..139337 | Clytia hemisphaerica | exon |
| TCONS_00002599-exon-sc0000021-1510915933:137680..139337 | TCONS_00002599-exon-sc0000021-1510915933:137680..139337 | Clytia hemisphaerica | exon |
| TCONS_00002599-exon-sc0000021-1575043694:137680..139337 | TCONS_00002599-exon-sc0000021-1575043694:137680..139337 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:136551..139337 + |
Blast
The following BLAST results are available for this feature:
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