TCONS_00002591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002591
Unique NameTCONS_00002591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002591 ID=TCONS_00002591|Name=TCONS_00002591|organism=Clytia hemisphaerica|type=transcript|length=663bp
TTACAAATTCAAGCGAACTTTAAAAAACTACATTCAAAATTCCCAGCGAT
ACAAGGAGAACTCAAGGTAAATCAAATCCTGTAATGTAAATTGGTGAATC
CTGTGAATCTAAAAAAATCATATCTATTCAATACGGCAAGAGGCTTATTA
TGTCAAGAAAACTACCTTAGGTTTGATCCAATCACCTTTTTGTCTGGAAA
GTATAACCACCCCTAAAATTAATTTCTCGCACTTGAAAATAATAAAGATT
GCATTCCATGAAGATATCCCCAAAGTAAACCTTTATTACTCCATGTTATA
AAATCCTGGCGTCCATTCATGTTATCAATTGAAATCACAATCCAAGATCA
CTTTTTCATTTGTGTTGTTGTCGTTTGAATTTGGAATGCTTATCCATAGT
TTGTggcaattcttttttcaattcttcttcAAGGATTCctttaaaattct
tataagcATCCACCTTGCTGTCAACCTCCTCCTTCTTTTCGCGGACCTTT
TGTAAACAATCCTTAGTGTATAGCCTTGGGTTACGTCCCTCGTCaatgta
tttaaaaatttctggtgGTACAAATATGTCTGAAAatgcatttttgtttt
tatcaatttcttgCATGTTAGATATCATATCATTGAGTTTTGTATTAAGA
GCTGGTTGAGCAC
Run BLAST on NCBI

transcript from alignment at sc0000021:672..1648+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002591 ID=TCONS_00002591|Name=TCONS_00002591|organism=Clytia hemisphaerica|type=transcript|length=977bp|location=Sequence derived from alignment at sc0000021:672..1648+ (Clytia hemisphaerica)
TTACAAATTCAAGCGAACTTTAAAAAACTACATTCAAAATTCCCAGCGAT
ACAAGGAGAACTCAAGGTAAATCAAATCCTGTAATGTAAATTGGTGAATC
CTGTGAATCTAAAAAAATCATATCTATTCAATACGGCAAGAGGCTTATTA
TGTCAAGAAAACTACCTTAGGTTTGATCCAATCACCTTTTTGTCTGGAAA
GTATAACCACCCCTAAAATTAATTTCTCGCACTTGAAAATAATAAAGATT
GCATTCCATGAAGATATCCCCAAAGTAAACCTTTATTACTCCATGTTATA
AAATCCTGGCGTCCATTCATGTTATCAATTGAAATCACAATCATGCAAAC
AAATTTGCATAACGAatttattacacccctgtctcacagccccgatggaA
CTTCTTTCCCGCAGTGGAGATGAACATTTTTAAGAAATCTCAAAGGgcat
aaaaattctattgtgcTCAGGTCTAAAAAATTCATTGGGGATAGTTTTGG
ATTGCAATTTTccttccattgaatttcaaactAGGATGAAAACAATgtca
atttccaagtggggctgaaaatGTAGGTTATATCTCACCGGGATGACACA
GGGTGTATTACATCACAACTTGAATAAGAATCCAAAAACATAATCTCAGG
ACTAACCAAGATCACTTTTTCATTTGTGTTGTTGTCGTTTGAATTTGGAA
TGCTTATCCATAGTTTGTggcaattcttttttcaattcttcttcAAGGAT
TCctttaaaattcttataagcATCCACCTTGCTGTCAACCTCCTCCTTCT
TTTCGCGGACCTTTTGTAAACAATCCTTAGTGTATAGCCTTGGGTTACGT
CCCTCGTCaatgtatttaaaaatttctggtgGTACAAATATGTCTGAAAa
tgcatttttgtttttatcaatttcttgCATGTTAGATATCATATCATTGA
GTTTTGTATTAAGAGCTGGTTGAGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001409XLOC_001409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002591-exon-sc0000021-1491911889:672..1013TCONS_00002591-exon-sc0000021-1491911889:672..1013Clytia hemisphaericaexon
TCONS_00002591-exon-sc0000021-1510915933:672..1013TCONS_00002591-exon-sc0000021-1510915933:672..1013Clytia hemisphaericaexon
TCONS_00002591-exon-sc0000021-1575043694:672..1013TCONS_00002591-exon-sc0000021-1575043694:672..1013Clytia hemisphaericaexon
TCONS_00002591-exon-sc0000021-1491911889:1328..1648TCONS_00002591-exon-sc0000021-1491911889:1328..1648Clytia hemisphaericaexon
TCONS_00002591-exon-sc0000021-1510915933:1328..1648TCONS_00002591-exon-sc0000021-1510915933:1328..1648Clytia hemisphaericaexon
TCONS_00002591-exon-sc0000021-1575043694:1328..1648TCONS_00002591-exon-sc0000021-1575043694:1328..1648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:672..1648 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.03064	10.468	16.7937	12.7452	8.64072	6.06024	7.15301	5.63845	2.0947	2.07342	2.29918	1.86246	1.21901	1.38919	2.31141	1.09165	3.39132	2.15819	1.40552	2.03988	3.95389	2.7233	6.10062	5.39091	3.88863	2.99758	2.12039	1.73403	3.88437	4.75628
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019145Mediator_Med10
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Blast
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BLAST of TCONS_00002591 vs. Swiss-Prot (Human)
Match: MED10 (Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.014e-22
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = -3 
Query:  362 AQPALNTKLNDMISNMQEIDKNKNAFSDIFVPPEIFKYIDEGRNPRLYTKDCLQKVREKKEEVDSKVDAYKNFKGIXXXXXXXXLPQTMDKHSKFKRQQH 661
            +Q  LN KLN +++ +Q+IDK +    DI VP E+F+YID+GRNP+LYTK+CL++   K E+V  K+D  K FK +L +EL K  P+ M K+   + + H
Sbjct:   33 SQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIRGEDH 132
The following BLAST results are available for this feature:
BLAST of TCONS_00002591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED101.014e-2245.00Mediator of RNA polymerase II transcription subuni... [more]
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