TCONS_00002588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002588
Unique NameTCONS_00002588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002588 ID=TCONS_00002588|Name=TCONS_00002588|organism=Clytia hemisphaerica|type=transcript|length=499bp
TCCATATAAAAGCTTAGATAAGATGATATGATTAAATATGGTAACAATAG
AGTTAGGGTGACAATGCCTCAATCCTGCAGAAATGAGTGAGGTAGTAGTT
GACCACATTTCAGAAATACGATTGTCTTTGTGAGATTTGAGACTGATGTG
GTTACGGTGTTTTGTCCAATGGAATCCAAGGTGGATAAGATCATTACGAG
GAAGCACTGGAATGTTATTTAGGGTAAGACGAGGATCCTTGATTGTCGAT
TTACCAGAGATTATGAATTGTGTTTTACTTTTTGTCATTGCGTGGAAAAA
GTTAATGCCGTTCTCCTTGCCAAACGATTCGCACGTACTAAGCATTCTCT
GAAGGTGTACGAGGGTGGAACTCAACAAGATTATGTCATCAGCGTAAGCG
ATCACTGCGGTGTGAAGACCATTCGGGAGAAAGGTACCCAATTTCTGTGA
CTGGATCGACAATAACAGTTCCTCGGTGTAGATATTAAAGAGGTATGGT
Run BLAST on NCBI

protein sequence of TCONS_00002588-protein

>TCONS_00002588-protein ID=TCONS_00002588-protein|Name=TCONS_00002588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
PYLFNIYTEELLLSIQSQKLGTFLPNGLHTAVIAYADDIILLSSTLVHLQ
RMLSTCESFGKENGINFFHAMTKSKTQFIISGKSTIKDPRLTLNNIPVLP
RNDLIHLGFHWTKHRNHISLKSHKDNRISEMWSTTTSLISAGLRHCHPNS
IVTIFNHIILSKLLYG
Run BLAST on NCBI

transcript from alignment at sc0000020:1063363..1063861

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002588 ID=TCONS_00002588|Name=TCONS_00002588|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at sc0000020:1063363..1063861 (Clytia hemisphaerica)
ACCATACCTCTTTAATATCTACACCGAGGAACTGTTATTGTCGATCCAGT
CACAGAAATTGGGTACCTTTCTCCCGAATGGTCTTCACACCGCAGTGATC
GCTTACGCTGATGACATAATCTTGTTGAGTTCCACCCTCGTACACCTTCA
GAGAATGCTTAGTACGTGCGAATCGTTTGGCAAGGAGAACGGCATTAACT
TTTTCCACGCAATGACAAAAAGTAAAACACAATTCATAATCTCTGGTAAA
TCGACAATCAAGGATCCTCGTCTTACCCTAAATAACATTCCAGTGCTTCC
TCGTAATGATCTTATCCACCTTGGATTCCATTGGACAAAACACCGTAACC
ACATCAGTCTCAAATCTCACAAAGACAATCGTATTTCTGAAATGTGGTCA
ACTACTACCTCACTCATTTCTGCAGGATTGAGGCATTGTCACCCTAACTC
TATTGTTACCATATTTAATCATATCATCTTATCTAAGCTTTTATATGGA

Coding sequence (CDS) from alignment at sc0000020:1063363..1063861

>TCONS_00002588 ID=TCONS_00002588|Name=TCONS_00002588|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000020:1063363..1063861 (Clytia hemisphaerica)
CCATACCTCTTTAATATCTACACCGAGGAACTGTTATTGTCGATCCAGTC
ACAGAAATTGGGTACCTTTCTCCCGAATGGTCTTCACACCGCAGTGATCG
CTTACGCTGATGACATAATCTTGTTGAGTTCCACCCTCGTACACCTTCAG
AGAATGCTTAGTACGTGCGAATCGTTTGGCAAGGAGAACGGCATTAACTT
TTTCCACGCAATGACAAAAAGTAAAACACAATTCATAATCTCTGGTAAAT
CGACAATCAAGGATCCTCGTCTTACCCTAAATAACATTCCAGTGCTTCCT
CGTAATGATCTTATCCACCTTGGATTCCATTGGACAAAACACCGTAACCA
CATCAGTCTCAAATCTCACAAAGACAATCGTATTTCTGAAATGTGGTCAA
CTACTACCTCACTCATTTCTGCAGGATTGAGGCATTGTCACCCTAACTCT
ATTGTTACCATATTTAATCATATCATCTTATCTAAGCTTTTATATGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001407XLOC_001407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002588-exon-sc0000020-1491911889:1063363..1063861TCONS_00002588-exon-sc0000020-1491911889:1063363..1063861Clytia hemisphaericaexon
TCONS_00002588-exon-sc0000020-1510915933:1063363..1063861TCONS_00002588-exon-sc0000020-1510915933:1063363..1063861Clytia hemisphaericaexon
TCONS_00002588-exon-sc0000020-1575043694:1063363..1063861TCONS_00002588-exon-sc0000020-1575043694:1063363..1063861Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002588-proteinTCONS_00002588-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:1063363..1063861 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.130368	0	0.147247	0	0.127695	0.123944	0	0.0813625	0	0	0	0	0	0	0	0	0.173082	0	0	0.788087	0.351675	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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