TCONS_00002586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002586
Unique NameTCONS_00002586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002586 ID=TCONS_00002586|Name=TCONS_00002586|organism=Clytia hemisphaerica|type=transcript|length=309bp
CGAAGATGTATTTTTGGCTCTTATCCGGGTGACTTTAAACCAATTTCCTT
CTTTTCCAGATTCAACTTTCCCTTCCTTGTTGATGTAATAATGTTTGACT
GTCTTCCCTTTTGTCATTATCCAATTATAGCCGTCATAATACTGGTCTTT
TGAGGAATCCAGGCTGATAAAAAACAGTGCATTAGTTTCAACATGTTTTG
GTAAAGACCTCAATGCAGAGTCCGGATTGgcattcaaaatcattttcaaa
gccTCTATGTTGTCTATAGGCTTGGAATTCTTCTCAGTAGCAGTGCTTCT
TTCTGAGTT
Run BLAST on NCBI

protein sequence of TCONS_00002586-protein

>TCONS_00002586-protein ID=TCONS_00002586-protein|Name=TCONS_00002586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
NSERSTATEKNSKPIDNIEALKMILNANPDSALRSLPKHVETNALFFISL
DSSKDQYYDGYNWIMTKGKTVKHYYINKEGKVESGKEGNWFKVTRIRAKN
TSS
Run BLAST on NCBI

transcript from alignment at sc0000020:1051080..1051388

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002586 ID=TCONS_00002586|Name=TCONS_00002586|organism=Clytia hemisphaerica|type=transcript|length=309bp|location=Sequence derived from alignment at sc0000020:1051080..1051388 (Clytia hemisphaerica)
AACTCAGAAAGAAGCACTGCTACTGAGAAGAATTCCAAGCCTATAGACAA
CATAGAggctttgaaaatgattttgaatgcCAATCCGGACTCTGCATTGA
GGTCTTTACCAAAACATGTTGAAACTAATGCACTGTTTTTTATCAGCCTG
GATTCCTCAAAAGACCAGTATTATGACGGCTATAATTGGATAATGACAAA
AGGGAAGACAGTCAAACATTATTACATCAACAAGGAAGGGAAAGTTGAAT
CTGGAAAAGAAGGAAATTGGTTTAAAGTCACCCGGATAAGAGCCAAAAAT
ACATCTTCG

Coding sequence (CDS) from alignment at sc0000020:1051080..1051388

>TCONS_00002586 ID=TCONS_00002586|Name=TCONS_00002586|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000020:1051080..1051388 (Clytia hemisphaerica)
AACTCAGAAAGAAGCACTGCTACTGAGAAGAATTCCAAGCCTATAGACAA
CATAGAggctttgaaaatgattttgaatgcCAATCCGGACTCTGCATTGA
GGTCTTTACCAAAACATGTTGAAACTAATGCACTGTTTTTTATCAGCCTG
GATTCCTCAAAAGACCAGTATTATGACGGCTATAATTGGATAATGACAAA
AGGGAAGACAGTCAAACATTATTACATCAACAAGGAAGGGAAAGTTGAAT
CTGGAAAAGAAGGAAATTGGTTTAAAGTCACCCGGATAAGAGCCAAAAAT
ACATCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001405XLOC_001405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002586-exon-sc0000020-1491911889:1051080..1051388TCONS_00002586-exon-sc0000020-1491911889:1051080..1051388Clytia hemisphaericaexon
TCONS_00002586-exon-sc0000020-1510915933:1051080..1051388TCONS_00002586-exon-sc0000020-1510915933:1051080..1051388Clytia hemisphaericaexon
TCONS_00002586-exon-sc0000020-1575043694:1051080..1051388TCONS_00002586-exon-sc0000020-1575043694:1051080..1051388Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002586-proteinTCONS_00002586-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:1051080..1051388 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.236164	0	0	0.402712	1.08043	0.7986	0.818539	0	0	0	0.501693	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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