TCONS_00002585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002585
Unique NameTCONS_00002585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002585 ID=TCONS_00002585|Name=TCONS_00002585|organism=Clytia hemisphaerica|type=transcript|length=784bp
atttgaaTGCTTATGTTCACTCAGGAAATGATTGTCTATCTGGTATTGAC
ATAAAAAAGGGGTATTACACCAGGGTGGCCCAAAAAACACCAAGGTTTCT
GTTGTTGAAATTGAGAAACATAAATGTGAGATCACACATAGTAAAATCAA
AGACATTCAATCCTTTCACTCAGTACGTTTTCATGAGCAAGGCATGATCT
TTTGGCGCTATTTTGACTGTGGTGGTGGCAGGTATGAGCCATTTCatgat
ttgaaatttgtatCAGGATTGAGTGTGGTCAGTGAATTTTCGGATATTCA
GAATGTATCTGCTTTTGTTCCCAAAAAGAGAGGTGATAGAGGATTGTGCA
ATTTGTTTTTCTGTTCTCATCCAGGTTGTATTGATAGTTTCCATAGTAAT
GAGGAGTTAGGTGTCCATGTTGAATCAAATAACCATCACTTTCATTCCAC
CAAATTGTCAAACATTGACTGTGTAAAAGTTCATTATGCCAAACTCATGC
ATGAAGCATCCCATACAATAACCTCCCAAAATCAGCCATCCAAGTCATTG
CCACTTTCTGATTTAGTTAGAAACTGCCCATTGTATAAGGAGGTGAGCAC
ACTTGGATGGGCTTTGCCAAAAAgatcaaactttcaaaagagGATTAAAT
GGAGGAAAGAAAACAACGCCAGAAGCAGTGGTGCTGAGAATGAGATCATT
ACGTGACGAGAACAACAAACGAGTCTTCACACCGGATCAATGGTTAACTA
AAGAGCAGGTACTTTTTCTTCAACATTCTTTAAA
Run BLAST on NCBI

protein sequence of TCONS_00002585-protein

>TCONS_00002585-protein ID=TCONS_00002585-protein|Name=TCONS_00002585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MIFWRYFDCGGGRYEPFHDLKFVSGLSVVSEFSDIQNVSAFVPKKRGDRG
LCNLFFCSHPGCIDSFHSNEELGVHVESNNHHFHSTKLSNIDCVKVHYAK
LMHEASHTITSQNQPSKSLPLSDLVRNCPLYKEVSTLGWALPKRSNFQKR
IKWRKENNARSSGAENEIIT
Run BLAST on NCBI

transcript from alignment at sc0000020:965063..965846

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002585 ID=TCONS_00002585|Name=TCONS_00002585|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at sc0000020:965063..965846 (Clytia hemisphaerica)
TTTAAAGAATGTTGAAGAAAAAGTACCTGCTCTTTAGTTAACCATTGATC
CGGTGTGAAGACTCGTTTGTTGTTCTCGTCACGTAATGATCTCATTCTCA
GCACCACTGCTTCTGGCGTTGTTTTCTTTCCTCCATTTAATCctcttttg
aaagtttgatcTTTTTGGCAAAGCCCATCCAAGTGTGCTCACCTCCTTAT
ACAATGGGCAGTTTCTAACTAAATCAGAAAGTGGCAATGACTTGGATGGC
TGATTTTGGGAGGTTATTGTATGGGATGCTTCATGCATGAGTTTGGCATA
ATGAACTTTTACACAGTCAATGTTTGACAATTTGGTGGAATGAAAGTGAT
GGTTATTTGATTCAACATGGACACCTAACTCCTCATTACTATGGAAACTA
TCAATACAACCTGGATGAGAACAGAAAAACAAATTGCACAATCCTCTATC
ACCTCTCTTTTTGGGAACAAAAGCAGATACATTCTGAATATCCGAAAATT
CACTGACCACACTCAATCCTGatacaaatttcaaatcatGAAATGGCTCA
TACCTGCCACCACCACAGTCAAAATAGCGCCAAAAGATCATGCCTTGCTC
ATGAAAACGTACTGAGTGAAAGGATTGAATGTCTTTGATTTTACTATGTG
TGATCTCACATTTATGTTTCTCAATTTCAACAACAGAAACCTTGGTGTTT
TTTGGGCCACCCTGGTGTAATACCCCTTTTTTATGTCAATACCAGATAGA
CAATCATTTCCTGAGTGAACATAAGCAttcaaat

Coding sequence (CDS) from alignment at sc0000020:965063..965846

>TCONS_00002585 ID=TCONS_00002585|Name=TCONS_00002585|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0000020:965063..965846 (Clytia hemisphaerica)
TCACGTAATGATCTCATTCTCAGCACCACTGCTTCTGGCGTTGTTTTCTT
TCCTCCATTTAATCctcttttgaaagtttgatcTTTTTGGCAAAGCCCAT
CCAAGTGTGCTCACCTCCTTATACAATGGGCAGTTTCTAACTAAATCAGA
AAGTGGCAATGACTTGGATGGCTGATTTTGGGAGGTTATTGTATGGGATG
CTTCATGCATGAGTTTGGCATAATGAACTTTTACACAGTCAATGTTTGAC
AATTTGGTGGAATGAAAGTGATGGTTATTTGATTCAACATGGACACCTAA
CTCCTCATTACTATGGAAACTATCAATACAACCTGGATGAGAACAGAAAA
ACAAATTGCACAATCCTCTATCACCTCTCTTTTTGGGAACAAAAGCAGAT
ACATTCTGAATATCCGAAAATTCACTGACCACACTCAATCCTGatacaaa
tttcaaatcatGAAATGGCTCATACCTGCCACCACCACAGTCAAAATAGC
GCCAAAAGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001404XLOC_001404Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002585-proteinTCONS_00002585-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002585-exon-sc0000020-1491911889:965063..965846TCONS_00002585-exon-sc0000020-1491911889:965063..965846Clytia hemisphaericaexon
TCONS_00002585-exon-sc0000020-1510915933:965063..965846TCONS_00002585-exon-sc0000020-1510915933:965063..965846Clytia hemisphaericaexon
TCONS_00002585-exon-sc0000020-1575043694:965063..965846TCONS_00002585-exon-sc0000020-1575043694:965063..965846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:965063..965846 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0601676	0.0698604	0	0.0832065	0	0	0.297055	0	0.193208	0	0	0.08207	0.127846	0	0.0375985	0	0.0474747	0.0655889	0	0	0.0872935	0	0.064317	0.39747	0.177366	0	0	0.136965	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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