TCONS_00002584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002584
Unique NameTCONS_00002584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002584 ID=TCONS_00002584|Name=TCONS_00002584|organism=Clytia hemisphaerica|type=transcript|length=806bp
GTCTAAACAATTTCTCCCTCCATCTTCTGATAGACAATCAGGTAGCCCTA
GCTCATGTGACAAAAATGGGAAGACCAACAAGCCAAGCATTGCTAGAGTT
GTCCAAGGAGATTTGGACTTATCTCATAGAGAGAAAGATCACTCTTACAG
CAGAATACATCCCATCGTTACAAAACAAAATTGCGGATTTCAAGTCGAGA
AACTCAAGAGACTGGGGGGATTGGAAATTAGATTCCCAGATATTCCAGAA
AATAGAGCAAATATGGGGAACTCCAAAAATAGACCTCGTTGCATCAAGAA
CGTCTTATCAACTTCAAAATTATTACAGCTGGAAACCAGACCCCTATTGT
CTAGCAGTAGATGCTCTCCTCCAAAATTGGGACTACAAACTCCTCTACGC
ATTCCCTCCCTTTTGCCTGATAGGAAGGTGTCTAGAGATATTCGGAGATC
AGAGTCAACAACGGTGATTCTGATTGCCCCAATGTGGATGTCCCAACCAT
GGTACCCAACACTCCTAGAAATAGTCATAGCACACCCAAGGAGAATTCAA
ATGAACAAGAGAACCCTAACACATCCCTCGGGAGAGGAACATCCTCTTCT
ACAAAACAACTCCTTGAATCTTGTAGCTTGGAAAGTTTCGGGCGATATAA
GGGCCCAGAGGGATTATCAGAAACAGCTACCACTCTTATCAGACATTCAA
GAGCAAAAGGGACAAGGGACCGTTACAACTCCGCCTGGAAAAGCTTTATG
GGTTGGTGCAGTGAAAGAAAGATGGATCCCACTTCATGCACTATAGGAAA
CATAAT
Run BLAST on NCBI

protein sequence of TCONS_00002584-protein

>TCONS_00002584-protein ID=TCONS_00002584-protein|Name=TCONS_00002584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
SKQFLPPSSDRQSGSPSSCDKNGKTNKPSIARVVQGDLDLSHREKDHSYS
RIHPIVTKQNCGFQVEKLKRLGGLEIRFPDIPENRANMGNSKNRPRCIKN
VLSTSKLLQLETRPLLSSSRCSPPKLGLQTPLRIPSLLPDRKVSRDIRRS
ESTTVILIAPMWMSQPWYPTLLEIVIAHPRRIQMNKRTLTHPSGEEHPLL
QNNSLNLVAWKVSGDIRAQRDYQKQLPLLSDIQEQKGQGTVTTPPGKALW
VGAVKERWIPLHAL
Run BLAST on NCBI

transcript from alignment at sc0000020:933141..933946

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002584 ID=TCONS_00002584|Name=TCONS_00002584|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at sc0000020:933141..933946 (Clytia hemisphaerica)
ATTATGTTTCCTATAGTGCATGAAGTGGGATCCATCTTTCTTTCACTGCA
CCAACCCATAAAGCTTTTCCAGGCGGAGTTGTAACGGTCCCTTGTCCCTT
TTGCTCTTGAATGTCTGATAAGAGTGGTAGCTGTTTCTGATAATCCCTCT
GGGCCCTTATATCGCCCGAAACTTTCCAAGCTACAAGATTCAAGGAGTTG
TTTTGTAGAAGAGGATGTTCCTCTCCCGAGGGATGTGTTAGGGTTCTCTT
GTTCATTTGAATTCTCCTTGGGTGTGCTATGACTATTTCTAGGAGTGTTG
GGTACCATGGTTGGGACATCCACATTGGGGCAATCAGAATCACCGTTGTT
GACTCTGATCTCCGAATATCTCTAGACACCTTCCTATCAGGCAAAAGGGA
GGGAATGCGTAGAGGAGTTTGTAGTCCCAATTTTGGAGGAGAGCATCTAC
TGCTAGACAATAGGGGTCTGGTTTCCAGCTGTAATAATTTTGAAGTTGAT
AAGACGTTCTTGATGCAACGAGGTCTATTTTTGGAGTTCCCCATATTTGC
TCTATTTTCTGGAATATCTGGGAATCTAATTTCCAATCCCCCCAGTCTCT
TGAGTTTCTCGACTTGAAATCCGCAATTTTGTTTTGTAACGATGGGATGT
ATTCTGCTGTAAGAGTGATCTTTCTCTCTATGAGATAAGTCCAAATCTCC
TTGGACAACTCTAGCAATGCTTGGCTTGTTGGTCTTCCCATTTTTGTCAC
ATGAGCTAGGGCTACCTGATTGTCTATCAGAAGATGGAGGGAGAAATTGT
TTAGAC

Coding sequence (CDS) from alignment at sc0000020:933141..933946

>TCONS_00002584 ID=TCONS_00002584|Name=TCONS_00002584|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at sc0000020:933141..933946 (Clytia hemisphaerica)
CTATAGTGCATGAAGTGGGATCCATCTTTCTTTCACTGCACCAACCCATA
AAGCTTTTCCAGGCGGAGTTGTAACGGTCCCTTGTCCCTTTTGCTCTTGA
ATGTCTGATAAGAGTGGTAGCTGTTTCTGATAATCCCTCTGGGCCCTTAT
ATCGCCCGAAACTTTCCAAGCTACAAGATTCAAGGAGTTGTTTTGTAGAA
GAGGATGTTCCTCTCCCGAGGGATGTGTTAGGGTTCTCTTGTTCATTTGA
ATTCTCCTTGGGTGTGCTATGACTATTTCTAGGAGTGTTGGGTACCATGG
TTGGGACATCCACATTGGGGCAATCAGAATCACCGTTGTTGACTCTGATC
TCCGAATATCTCTAGACACCTTCCTATCAGGCAAAAGGGAGGGAATGCGT
AGAGGAGTTTGTAGTCCCAATTTTGGAGGAGAGCATCTACTGCTAGACAA
TAGGGGTCTGGTTTCCAGCTGTAATAATTTTGAAGTTGATAAGACGTTCT
TGATGCAACGAGGTCTATTTTTGGAGTTCCCCATATTTGCTCTATTTTCT
GGAATATCTGGGAATCTAATTTCCAATCCCCCCAGTCTCTTGAGTTTCTC
GACTTGAAATCCGCAATTTTGTTTTGTAACGATGGGATGTATTCTGCTGT
AAGAGTGATCTTTCTCTCTATGAGATAAGTCCAAATCTCCTTGGACAACT
CTAGCAATGCTTGGCTTGTTGGTCTTCCCATTTTTGTCACATGAGCTAGG
GCTACCTGATTGTCTATCAGAAGATGGAGGGAGAAATTGTTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001403XLOC_001403Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002584-proteinTCONS_00002584-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002584-exon-sc0000020-1491911889:933141..933946TCONS_00002584-exon-sc0000020-1491911889:933141..933946Clytia hemisphaericaexon
TCONS_00002584-exon-sc0000020-1510915933:933141..933946TCONS_00002584-exon-sc0000020-1510915933:933141..933946Clytia hemisphaericaexon
TCONS_00002584-exon-sc0000020-1575043694:933141..933946TCONS_00002584-exon-sc0000020-1575043694:933141..933946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:933141..933946 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120076	0.0581401	0	0	0.0955159	0.0751754	0.185157	0.189087	0.117345	0.233745	0.336856	0.479843	0.276602	0.74163	0.0344744	0.036867	0.0450738	0.093177	0	0	0.116965	0	0.0691331	0.125283	0.307624	0.731558	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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