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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002577 ID=TCONS_00002577|Name=TCONS_00002577|organism=Clytia hemisphaerica|type=transcript|length=1109bp
GAGGCATCGCTTcactgaaaatatgaaatattttttggctGGTATACTTT
TTTTCTGTGTCATATATTACTTCCAAGGATCCGAAAAACGAACCAATCTT
CAAGAAGAAATGAAAGAATTCAATAAAAAGTTCCAGAATGGTTTCCCAAG
GCAAAAGATACGAGAACGTCTTTCAAGGAAAAGTTTCTTTGATCCAAAAC
TGATTTTATTTTACACCGAATTCTTTGGTACGCGTCCATGGAAACGACAT
TTTGTTCGGGAGAATCTCAAATGTAGAATGAAGATTCCATGTCATGTTTC
ATTCGATCCAGAAAGATTCGTAGATAGCCACGcggttatttttcatttat
tagatattaaatattttgaagagCTGCGCATGCTTAATGCTCATCCAATC
AGATCAAAGCAAATATGGATCATTTTCACAATGGAAAATCCATTAAGTGC
AATCTTTAATCCGGAATTAGACGACTTGTTCAATTTTACTATGAGTTATC
GAGCCGAATCTGATTTCCGGTTTTCATACGGGTATTATTACCCGCGGAAA
GAGCCGGCCGATCAACTAAGAACCGTACCGACACCAAAAGTGAACTTCGC
AGTAACCAAAAGTAAACAGGTTGCTTGGCTAGTTTCGAATTGTGGCAAAT
TTAGAGACAGCTTAGTACAAAAGTTGGAAAAAAACTCATATATAACTACA
TATGTCGGAGGGAAAtgttcaaaatattacaaaaaccAGTTAAAATGTAA
AGGACATATATGCAATGAAACGCTAAGTGAGCATAAATTTTATTTAGCAT
TCGAGAATAGCTTTTGCCCAGATTACGTGACCGAGAAGTATTGGTTTCAT
CCAATTCAGAACCATATGATCCCAATTGTTCTGGGAGGAGCAAATTACAA
AGACCCAAAATTGGCGATCCCAGGGTCGTTTATTGATGTGTTCGATTTTA
AGAGTCCAAAACATTTGATGGATTATATACTAGAAATCGACTATGACGAT
ACATTGTTtaactcttattttgattggagGAATAAATATGAATTTTTCTC
AGAAGATTGGGAATGTCACAAGGCTGTGAATGACATTTGTACTAAAATGA
ATACTGATG Run BLAST on NCBI protein sequence of TCONS_00002577-protein >TCONS_00002577-protein ID=TCONS_00002577-protein|Name=TCONS_00002577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
RHRFTENMKYFLAGILFFCVIYYFQGSEKRTNLQEEMKEFNKKFQNGFPR
QKIRERLSRKSFFDPKLILFYTEFFGTRPWKRHFVRENLKCRMKIPCHVS
FDPERFVDSHAVIFHLLDIKYFEELRMLNAHPIRSKQIWIIFTMENPLSA
IFNPELDDLFNFTMSYRAESDFRFSYGYYYPRKEPADQLRTVPTPKVNFA
VTKSKQVAWLVSNCGKFRDSLVQKLEKNSYITTYVGGKCSKYYKNQLKCK
GHICNETLSEHKFYLAFENSFCPDYVTEKYWFHPIQNHMIPIVLGGANYK
DPKLAIPGSFIDVFDFKSPKHLMDYILEIDYDDTLFNSYFDWRNKYEFFS
EDWECHKAVNDICTKMNTD Run BLAST on NCBI transcript from alignment at sc0000020:757179..758287 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002577 ID=TCONS_00002577|Name=TCONS_00002577|organism=Clytia hemisphaerica|type=transcript|length=1109bp|location=Sequence derived from alignment at sc0000020:757179..758287 (Clytia hemisphaerica)
CATCAGTATTCATTTTAGTACAAATGTCATTCACAGCCTTGTGACATTCC
CAATCTTCTGAGAAAAATTCATATTTATTCctccaatcaaaataagagtt
aAACAATGTATCGTCATAGTCGATTTCTAGTATATAATCCATCAAATGTT
TTGGACTCTTAAAATCGAACACATCAATAAACGACCCTGGGATCGCCAAT
TTTGGGTCTTTGTAATTTGCTCCTCCCAGAACAATTGGGATCATATGGTT
CTGAATTGGATGAAACCAATACTTCTCGGTCACGTAATCTGGGCAAAAGC
TATTCTCGAATGCTAAATAAAATTTATGCTCACTTAGCGTTTCATTGCAT
ATATGTCCTTTACATTTTAACTggtttttgtaatattttgaacaTTTCCC
TCCGACATATGTAGTTATATATGAGTTTTTTTCCAACTTTTGTACTAAGC
TGTCTCTAAATTTGCCACAATTCGAAACTAGCCAAGCAACCTGTTTACTT
TTGGTTACTGCGAAGTTCACTTTTGGTGTCGGTACGGTTCTTAGTTGATC
GGCCGGCTCTTTCCGCGGGTAATAATACCCGTATGAAAACCGGAAATCAG
ATTCGGCTCGATAACTCATAGTAAAATTGAACAAGTCGTCTAATTCCGGA
TTAAAGATTGCACTTAATGGATTTTCCATTGTGAAAATGATCCATATTTG
CTTTGATCTGATTGGATGAGCATTAAGCATGCGCAGctcttcaaaatatt
taatatctaataaatgaaaaataaccgCGTGGCTATCTACGAATCTTTCT
GGATCGAATGAAACATGACATGGAATCTTCATTCTACATTTGAGATTCTC
CCGAACAAAATGTCGTTTCCATGGACGCGTACCAAAGAATTCGGTGTAAA
ATAAAATCAGTTTTGGATCAAAGAAACTTTTCCTTGAAAGACGTTCTCGT
ATCTTTTGCCTTGGGAAACCATTCTGGAACTTTTTATTGAATTCTTTCAT
TTCTTCTTGAAGATTGGTTCGTTTTTCGGATCCTTGGAAGTAATATATGA
CACAGAAAAAAAGTATACCagccaaaaaatatttcatattttcagtgAAG
CGATGCCTC Coding sequence (CDS) from alignment at sc0000020:757179..758287 >TCONS_00002577 ID=TCONS_00002577|Name=TCONS_00002577|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at sc0000020:757179..758287 (Clytia hemisphaerica)
ATCAGTATTCATTTTAGTACAAATGTCATTCACAGCCTTGTGACATTCCC
AATCTTCTGAGAAAAATTCATATTTATTCctccaatcaaaataagagtta
AACAATGTATCGTCATAGTCGATTTCTAGTATATAATCCATCAAATGTTT
TGGACTCTTAAAATCGAACACATCAATAAACGACCCTGGGATCGCCAATT
TTGGGTCTTTGTAATTTGCTCCTCCCAGAACAATTGGGATCATATGGTTC
TGAATTGGATGAAACCAATACTTCTCGGTCACGTAATCTGGGCAAAAGCT
ATTCTCGAATGCTAAATAAAATTTATGCTCACTTAGCGTTTCATTGCATA
TATGTCCTTTACATTTTAACTggtttttgtaatattttgaacaTTTCCCT
CCGACATATGTAGTTATATATGAGTTTTTTTCCAACTTTTGTACTAAGCT
GTCTCTAAATTTGCCACAATTCGAAACTAGCCAAGCAACCTGTTTACTTT
TGGTTACTGCGAAGTTCACTTTTGGTGTCGGTACGGTTCTTAGTTGATCG
GCCGGCTCTTTCCGCGGGTAATAATACCCGTATGAAAACCGGAAATCAGA
TTCGGCTCGATAACTCATAGTAAAATTGAACAAGTCGTCTAATTCCGGAT
TAAAGATTGCACTTAATGGATTTTCCATTGTGAAAATGATCCATATTTGC
TTTGATCTGATTGGATGAGCATTAAGCATGCGCAGctcttcaaaatattt
aatatctaataaatgaaaaataaccgCGTGGCTATCTACGAATCTTTCTG
GATCGAATGAAACATGACATGGAATCTTCATTCTACATTTGAGATTCTCC
CGAACAAAATGTCGTTTCCATGGACGCGTACCAAAGAATTCGGTGTAAAA
TAAAATCAGTTTTGGATCAAAGAAACTTTTCCTTGAAAGACGTTCTCGTA
TCTTTTGCCTTGGGAAACCATTCTGGAACTTTTTATTGAATTCTTTCATT
TCTTCTTGAAGATTGGTTCGTTTTTCGGATCCTTGGAAGTAATATATGAC
ACAGAAAAAAAGTATACCagccaaaaaatatttcatattttcagtgAAGC
GATGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002577-exon-sc0000020-1491911889:757179..758287 | TCONS_00002577-exon-sc0000020-1491911889:757179..758287 | Clytia hemisphaerica | exon |
| TCONS_00002577-exon-sc0000020-1510915933:757179..758287 | TCONS_00002577-exon-sc0000020-1510915933:757179..758287 | Clytia hemisphaerica | exon |
| TCONS_00002577-exon-sc0000020-1575043694:757179..758287 | TCONS_00002577-exon-sc0000020-1575043694:757179..758287 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:757179..758287 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008417 | fucosyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008417 |
fucosyltransferase activity |
Blast
BLAST of TCONS_00002577 vs. Swiss-Prot (Human)
Match: FUT6 (Alpha-(1,3)-fucosyltransferase 6 OS=Homo sapiens GN=FUT6 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 8.809e-37 Identity = 94/271 (34.69%), Postives = 136/271 (50.18%), Query Frame = 2
Query: 269 KCRMKIP----CHVSFDPERFVDSHAVIFHLLDIKYFEELRMLNAHPIRSKQIWIIFTMENPLSAIFNPELDDLFNFTMSYRAESDFRFSYGYYYP-RKEPADQLRTVPTPKVNFAVTKSKQVAWLVSNCG--KFRDSLVQKLEKNSYITTYVGGKCSKYYKNQLKCKGHICNETLSEHKFYLAFENSFCPDYVTEKYWFHPIQNHMIPIVLGGANYKDPKLAIPGSFIDVFDFKSPKHLMDYILEIDYDDTLFNSYFDWRNKYEFFSEDW 1060
+C +P C+++ D + + + AVI H ++ Y ++ + P R Q WI F+ME+P +D FN TMSYR++SD YG+ P +PA P +N + K++ VAW VSN G R Q L+ + + Y G+ K ETLS +KFYLAFENS PDY+TEK W + ++ +P+VLG + + P +FI V DF+SPK L Y+ E+D D + SYF WR S W
Sbjct: 79 RCSEMVPGTADCNITADRKVYPQADAVIVHHREVMYNPSAQLPRS-PRRQGQRWIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFTPYGWLEPWSGQPAH-------PPLNLSA-KTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVY--GRSHK------PLPQGTMMETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSW 332
The following BLAST results are available for this feature:
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