TCONS_00002574 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002574
Unique NameTCONS_00002574
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002574 ID=TCONS_00002574|Name=TCONS_00002574|organism=Clytia hemisphaerica|type=transcript|length=469bp
TTGTTTCTTTCAATTGTCACCATTTTAACTTTTGGTGGTAAGAACGTCAA
GTTTACGTCAAAATTATTGGTGCTCGTTCATGTTCTGTGGGCCAGGTgct
ttacaaaaaaaataataaagaaattcGGTCTTTTTCGAAGGATTTTCTAA
ATTGCAAAAATCGAAGATTGACTCAATCAAAGGGGCATAAATTCTTGATA
TTATGAGCAAAACTTGACAataattttgggaaaaaagtttCTCCAGTGGt
cttaaaaacttcaaaatttggcaaaaacatTCAATCTAACCCTTTCGGAG
GGTCGATCttcgaactttggctcggacGTACCCGTCATCTTGATTTCATG
ACCAAtcttcacaataaagtcataaaacctgacaTGATAGGTACTAACAT
TTTAAACTTTATAAAATCAGGAATAATAAACTATAATGTTAAATGTCAAA
ATTCAATTATTATTActgt
Run BLAST on NCBI

transcript from alignment at sc0000020:718274..718742

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002574 ID=TCONS_00002574|Name=TCONS_00002574|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0000020:718274..718742 (Clytia hemisphaerica)
acagTAATAATAATTGAATTTTGACATTTAACATTATAGTTTATTATTCC
TGATTTTATAAAGTTTAAAATGTTAGTACCTATCAtgtcaggttttatga
ctttattgtgaagaTTGGTCATGAAATCAAGATGACGGGTACgtccgagc
caaagttcgaaGATCGACCCTCCGAAAGGGTTAGATTGAatgtttttgcc
aaattttgaagtttttaagaCCACTGGAGaaacttttttcccaaaattat
TGTCAAGTTTTGCTCATAATATCAAGAATTTATGCCCCTTTGATTGAGTC
AATCTTCGATTTTTGCAATTTAGAAAATCCTTCGAAAAAGACCgaatttc
tttattattttttttgtaaagcACCTGGCCCACAGAACATGAACGAGCAC
CAATAATTTTGACGTAAACTTGACGTTCTTACCACCAAAAGTTAAAATGG
TGACAATTGAAAGAAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001393XLOC_001393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002574-exon-sc0000020-1491911889:718274..718742TCONS_00002574-exon-sc0000020-1491911889:718274..718742Clytia hemisphaericaexon
TCONS_00002574-exon-sc0000020-1510915933:718274..718742TCONS_00002574-exon-sc0000020-1510915933:718274..718742Clytia hemisphaericaexon
TCONS_00002574-exon-sc0000020-1575043694:718274..718742TCONS_00002574-exon-sc0000020-1575043694:718274..718742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:718274..718742 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.409359	0.532252	0.308998	0	0	0	0	0	0	0	0	0	0.0907505	0	0.30993	0.0831505	0	0	0	0	0	0	0	0	0.87902	0	0	0	0.151452	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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