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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002572 ID=TCONS_00002572|Name=TCONS_00002572|organism=Clytia hemisphaerica|type=transcript|length=2108bp
CATAAAGGGCGGTTTCAacatttttatctaaaaatttgctcgctgttttt
aaaaGAGAAGTTTTGTTTTCAGTTGACTAATGCATGTAAGATTTTGTTAA
GCCGATTTCTTACATATcataaatttcaacaaaaaacttcAGAGAGCATT
ATAGTCGTTTGTTGTAATTCAAGTGAAAATGGGGAACTTGTTCAGTAGTA
AAGCTCCAATATGCGAGAAGAAAAAACCAGAACCGATTCCGAAAGATTTA
CCAGAAGTTCCATACGCTGGTAGTGAGAATCCACAAGAAAATCTGGCGAA
CCTTGGCAAAATCAAAGGACCCTACTATATAAATCAAGTTATGAAAGAAA
CTGGTTTGGGTGTTTTCAAGTTAAGATTATTCGAAGAGCGTATCATCCTT
GCAGATCCAATTGCAATCAATGTTATATATGATCCAGAGCTGACAGAGAA
ATCAGTGGATTTTGGATTAGCCAATGTGAATGGCTTCACTCTAAAAGGTT
ACTTTCCAACAGCTACGGTCAATGGAGACGAtaaagcaaccaaaaaagca
GGAATGTGGAAAATCTTAAGCATGGCTGAAGAGAAGTATGGCAATGATGG
TTTATACAAAATCTTGAAGAAACATTGGGAATCTGTTTTACCATTGATCA
AAGATGAAGAAACCAATGTTGACAATTTGATTGATGTTGTGACTGTTAAA
ACATTAACtgaattcttttttgataaGGCTTTCGATTTGGATTTGAAAAC
CTTTTTGGTATGGTTTTTCAAAGGGTTGACACCTAAAAGTACACCTGGAT
TGGAGCTGGATGATGTTGGTAAGCAGGTGACCGAGCAAATGTATGGTTAC
CTGAATAGCACACCATGGGCTCAGAATGTCTTGCCAGAGCTGCTCAAAGC
TGATTGCCGAGATGCTGAAACTTTGAAAAGCGAGGCTCTATTTTTCGCCT
TTGTTTTCTCAGCTTTTGGTTTAAAAAGTGGTTTATCATCGATCATTCCG
TTGTTTTTGAATCTGGATGACGAAACCCGAAACAAGATTTTGGAGGAAGT
TGATGCATTCAATCAAGATGATGGAAAAAATATGGATGAGAAGTTAAAAG
CATTTGATGTTACCGATAGATTTGCAACAGAAGTTTTCAGATATTTACCA
CCCGTCCTTCAAGTGCAAGGTCGTGCTAAGAAAGATTTCGTTTTGAATTC
GCTTAAAGGTAAATATCTGGTCAAGAAAGGTTCGTACATGACTGGATACT
CATACGGAGCGCAACGTAACCCAAACGCTGTTCGATGCCCGTACCAATTC
ACAACAACTGGTGATCAAAAACACATCAAAGAGAATTTCTTCGCTTTTGG
AGGCCCTCACAATCAAGAGCCGCAAAATGATAACCGAAAATGCTTGGGTC
AATACATCTCTTTAAATATGACCAAAATGTTTGTGGCTTTGTTTGCAAGA
TGTGAAATCGAAGTTGTTTCCAGTTTGAAATTCACAGAAGCCAACCCAAA
CAGAGTCATCGCCAGCGATGAGCCATTAAGGGTCAGTAAATTTGAATGTC
CCCACAAATAGAACTTCAGTTCAAAATTATACATGTTTTAACAAAAAACA
TTTGACAATAATGACATTTTATTTAGGGGGTTTAGAAAaagttatctttt
tttttttggataattCTAACGCAAATCAGCAGACAACTTTATAATGGTAG
GTATAAATTATAGTAGTATAAATTTTGtagcaataattcaaaacattttc
aaacaacAACGTATTACAAtcatttttattgatttgaagCCCCAATAGTT
TAGAAAGGCACGCATGTGTCTCTGGAAATCGTACATACATTAGAAAATGT
ATGGTTTCTTTCACAAAGACGAAAATCTAGCCACAAAACCGGGGCTTGAA
TTATATACGGCTATACAATACAATTATCCTTTTTCATATGATCTGAGTAT
TAATTTTGCGGTTGATatagaaaagtgaaaaatactgagctctcaaaaat
agttttcatAATACACGAGAGCAGGTAGGCTGGAATAAGAGTACACCAGt
gtctcacagtcccggtggagctttttcctcagcggggataaaaaaatttc
tattgaaa Run BLAST on NCBI protein sequence of TCONS_00002572-protein >TCONS_00002572-protein ID=TCONS_00002572-protein|Name=TCONS_00002572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
MGNLFSSKAPICEKKKPEPIPKDLPEVPYAGSENPQENLANLGKIKGPYY
INQVMKETGLGVFKLRLFEERIILADPIAINVIYDPELTEKSVDFGLANV
NGFTLKGYFPTATVNGDDKATKKAGMWKILSMAEEKYGNDGLYKILKKHW
ESVLPLIKDEETNVDNLIDVVTVKTLTEFFFDKAFDLDLKTFLVWFFKGL
TPKSTPGLELDDVGKQVTEQMYGYLNSTPWAQNVLPELLKADCRDAETLK
SEALFFAFVFSAFGLKSGLSSIIPLFLNLDDETRNKILEEVDAFNQDDGK
NMDEKLKAFDVTDRFATEVFRYLPPVLQVQGRAKKDFVLNSLKGKYLVKK
GSYMTGYSYGAQRNPNAVRCPYQFTTTGDQKHIKENFFAFGGPHNQEPQN
DNRKCLGQYISLNMTKMFVALFARCEIEVVSSLKFTEANPNRVIASDEPL
RVSKFECPHK Run BLAST on NCBI transcript from alignment at sc0000020:706810..708917 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002572 ID=TCONS_00002572|Name=TCONS_00002572|organism=Clytia hemisphaerica|type=transcript|length=2108bp|location=Sequence derived from alignment at sc0000020:706810..708917 (Clytia hemisphaerica)
tttcaatagaaatttttttatccccgctgaggaaaaagctccaccgggac
tgtgagacaCTGGTGTACTCTTATTCCAGCCTACCTGCTCTCGTGTATTa
tgaaaactatttttgagagctcagtatttttcacttttctatATCAACCG
CAAAATTAATACTCAGATCATATGAAAAAGGATAATTGTATTGTATAGCC
GTATATAATTCAAGCCCCGGTTTTGTGGCTAGATTTTCGTCTTTGTGAAA
GAAACCATACATTTTCTAATGTATGTACGATTTCCAGAGACACATGCGTG
CCTTTCTAAACTATTGGGGcttcaaatcaataaaaatgaTTGTAATACGT
TgttgtttgaaaatgttttgaattattgctaCAAAATTTATACTACTATA
ATTTATACCTACCATTATAAAGTTGTCTGCTGATTTGCGTTAGaattatc
caaaaaaaaaaagataacttTTTCTAAACCCCCTAAATAAAATGTCATTA
TTGTCAAATGTTTTTTGTTAAAACATGTATAATTTTGAACTGAAGTTCTA
TTTGTGGGGACATTCAAATTTACTGACCCTTAATGGCTCATCGCTGGCGA
TGACTCTGTTTGGGTTGGCTTCTGTGAATTTCAAACTGGAAACAACTTCG
ATTTCACATCTTGCAAACAAAGCCACAAACATTTTGGTCATATTTAAAGA
GATGTATTGACCCAAGCATTTTCGGTTATCATTTTGCGGCTCTTGATTGT
GAGGGCCTCCAAAAGCGAAGAAATTCTCTTTGATGTGTTTTTGATCACCA
GTTGTTGTGAATTGGTACGGGCATCGAACAGCGTTTGGGTTACGTTGCGC
TCCGTATGAGTATCCAGTCATGTACGAACCTTTCTTGACCAGATATTTAC
CTTTAAGCGAATTCAAAACGAAATCTTTCTTAGCACGACCTTGCACTTGA
AGGACGGGTGGTAAATATCTGAAAACTTCTGTTGCAAATCTATCGGTAAC
ATCAAATGCTTTTAACTTCTCATCCATATTTTTTCCATCATCTTGATTGA
ATGCATCAACTTCCTCCAAAATCTTGTTTCGGGTTTCGTCATCCAGATTC
AAAAACAACGGAATGATCGATGATAAACCACTTTTTAAACCAAAAGCTGA
GAAAACAAAGGCGAAAAATAGAGCCTCGCTTTTCAAAGTTTCAGCATCTC
GGCAATCAGCTTTGAGCAGCTCTGGCAAGACATTCTGAGCCCATGGTGTG
CTATTCAGGTAACCATACATTTGCTCGGTCACCTGCTTACCAACATCATC
CAGCTCCAATCCAGGTGTACTTTTAGGTGTCAACCCTTTGAAAAACCATA
CCAAAAAGGTTTTCAAATCCAAATCGAAAGCCttatcaaaaaagaattca
GTTAATGTTTTAACAGTCACAACATCAATCAAATTGTCAACATTGGTTTC
TTCATCTTTGATCAATGGTAAAACAGATTCCCAATGTTTCTTCAAGATTT
TGTATAAACCATCATTGCCATACTTCTCTTCAGCCATGCTTAAGATTTTC
CACATTCCtgcttttttggttgctttaTCGTCTCCATTGACCGTAGCTGT
TGGAAAGTAACCTTTTAGAGTGAAGCCATTCACATTGGCTAATCCAAAAT
CCACTGATTTCTCTGTCAGCTCTGGATCATATATAACATTGATTGCAATT
GGATCTGCAAGGATGATACGCTCTTCGAATAATCTTAACTTGAAAACACC
CAAACCAGTTTCTTTCATAACTTGATTTATATAGTAGGGTCCTTTGATTT
TGCCAAGGTTCGCCAGATTTTCTTGTGGATTCTCACTACCAGCGTATGGA
ACTTCTGGTAAATCTTTCGGAATCGGTTCTGGTTTTTTCTTCTCGCATAT
TGGAGCTTTACTACTGAACAAGTTCCCCATTTTCACTTGAATTACAACAA
ACGACTATAATGCTCTCTgaagttttttgttgaaatttatgATATGTAAG
AAATCGGCTTAACAAAATCTTACATGCATTAGTCAACTGAAAACAAAACT
TCTCttttaaaaacagcgagcaaatttttagataaaaatgtTGAAACCGC
CCTTTATG Coding sequence (CDS) from alignment at sc0000020:706810..708917 >TCONS_00002572 ID=TCONS_00002572|Name=TCONS_00002572|organism=Clytia hemisphaerica|type=CDS|length=1383bp|location=Sequence derived from alignment at sc0000020:706810..708917 (Clytia hemisphaerica)
CTATTTGTGGGGACATTCAAATTTACTGACCCTTAATGGCTCATCGCTGG
CGATGACTCTGTTTGGGTTGGCTTCTGTGAATTTCAAACTGGAAACAACT
TCGATTTCACATCTTGCAAACAAAGCCACAAACATTTTGGTCATATTTAA
AGAGATGTATTGACCCAAGCATTTTCGGTTATCATTTTGCGGCTCTTGAT
TGTGAGGGCCTCCAAAAGCGAAGAAATTCTCTTTGATGTGTTTTTGATCA
CCAGTTGTTGTGAATTGGTACGGGCATCGAACAGCGTTTGGGTTACGTTG
CGCTCCGTATGAGTATCCAGTCATGTACGAACCTTTCTTGACCAGATATT
TACCTTTAAGCGAATTCAAAACGAAATCTTTCTTAGCACGACCTTGCACT
TGAAGGACGGGTGGTAAATATCTGAAAACTTCTGTTGCAAATCTATCGGT
AACATCAAATGCTTTTAACTTCTCATCCATATTTTTTCCATCATCTTGAT
TGAATGCATCAACTTCCTCCAAAATCTTGTTTCGGGTTTCGTCATCCAGA
TTCAAAAACAACGGAATGATCGATGATAAACCACTTTTTAAACCAAAAGC
TGAGAAAACAAAGGCGAAAAATAGAGCCTCGCTTTTCAAAGTTTCAGCAT
CTCGGCAATCAGCTTTGAGCAGCTCTGGCAAGACATTCTGAGCCCATGGT
GTGCTATTCAGGTAACCATACATTTGCTCGGTCACCTGCTTACCAACATC
ATCCAGCTCCAATCCAGGTGTACTTTTAGGTGTCAACCCTTTGAAAAACC
ATACCAAAAAGGTTTTCAAATCCAAATCGAAAGCCttatcaaaaaagaat
tcaGTTAATGTTTTAACAGTCACAACATCAATCAAATTGTCAACATTGGT
TTCTTCATCTTTGATCAATGGTAAAACAGATTCCCAATGTTTCTTCAAGA
TTTTGTATAAACCATCATTGCCATACTTCTCTTCAGCCATGCTTAAGATT
TTCCACATTCCtgcttttttggttgctttaTCGTCTCCATTGACCGTAGC
TGTTGGAAAGTAACCTTTTAGAGTGAAGCCATTCACATTGGCTAATCCAA
AATCCACTGATTTCTCTGTCAGCTCTGGATCATATATAACATTGATTGCA
ATTGGATCTGCAAGGATGATACGCTCTTCGAATAATCTTAACTTGAAAAC
ACCCAAACCAGTTTCTTTCATAACTTGATTTATATAGTAGGGTCCTTTGA
TTTTGCCAAGGTTCGCCAGATTTTCTTGTGGATTCTCACTACCAGCGTAT
GGAACTTCTGGTAAATCTTTCGGAATCGGTTCTGGTTTTTTCTTCTCGCA
TATTGGAGCTTTACTACTGAACAAGTTCCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002572-exon-sc0000020-1491911889:706810..708917 | TCONS_00002572-exon-sc0000020-1491911889:706810..708917 | Clytia hemisphaerica | exon |
| TCONS_00002572-exon-sc0000020-1510915933:706810..708917 | TCONS_00002572-exon-sc0000020-1510915933:706810..708917 | Clytia hemisphaerica | exon |
| TCONS_00002572-exon-sc0000020-1575043694:706810..708917 | TCONS_00002572-exon-sc0000020-1575043694:706810..708917 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:706810..708917 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001128 | Cyt_P450 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
The following BLAST results are available for this feature:
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