TCONS_00002563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002563
Unique NameTCONS_00002563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002563 ID=TCONS_00002563|Name=TCONS_00002563|organism=Clytia hemisphaerica|type=transcript|length=878bp
CCGCCCATATCCCCACCGCCCATATCACCACCAATGCACCATCCACCAAT
AGCACAACCGCCCATACCACCACCAATGCACCATCCACCAATAACACAAT
ATTTGTCAATGCCACAGTAACAACTGACACCACCACAACGACCACACTAT
GTGATGATACTGACTCTGGTTCTATCGTTCTTTGCAATGACATTCGTTGT
ATGATAATATGCAACTTGGTTTTGTTGTTAATGTTTTATCATTCTTCATA
ATAAAATTTGTGCGCAAGTCGAGCACTCTACTTGAATTCAACATACCAAG
TTATGGAGAAACTACATTTCGATTACTCCTACAAAAACATACCGattgaa
acaataatttttcACTACTTCAACTATGATAGCATGATAATATTTTATAA
CTAGCAATTAGCTTTCGCTATGATGCTCCCGATGACAGGCATTTGACAgt
gattgattgaaattcagaaaaggcgaAATGCCGGGATAGAAAGTCGCATA
TTATTGGTCTTTCCTAATTCAATCCATACTACTACATAATACTTGTACCA
ATGTTCCAATACTTAAAATTCTAAAACATGACACTAGAACATTCTTGAAA
ACATTCTAATGTCTTAACAAAATACTTTAATAGGCGGGGGGGacggaata
aaaatgtcctggtggaaaatttttggaacGGAGGTCAATACAGCataatt
aggacaaaagagggaattttcaaaaatattttccccgaAACTAATAAGCG
AGGGGTTGGATTAAAGCTAAGGGGACACGGAAACAATTTTTGTGCaattg
caacaaaaacaaattgtcGCAATCGCAATGAAATTTTACACCGTGTCGTA
TAGGGCTAGCACAcgaaacaaaatcata
Run BLAST on NCBI

transcript from alignment at sc0000020:434416..435293

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002563 ID=TCONS_00002563|Name=TCONS_00002563|organism=Clytia hemisphaerica|type=transcript|length=878bp|location=Sequence derived from alignment at sc0000020:434416..435293 (Clytia hemisphaerica)
tatgattttgtttcgTGTGCTAGCCCTATACGACACGGTGTAAAATTTCA
TTGCGATTGCgacaatttgtttttgttgcaattGCACAAAAATTGTTTCC
GTGTCCCCTTAGCTTTAATCCAACCCCTCGCTTATTAGTTtcggggaaaa
tatttttgaaaattccctcttttgtcctaattatGCTGTATTGACCTCCg
ttccaaaaattttccaccaggacatttttattccgtCCCCCCCGCCTATT
AAAGTATTTTGTTAAGACATTAGAATGTTTTCAAGAATGTTCTAGTGTCA
TGTTTTAGAATTTTAAGTATTGGAACATTGGTACAAGTATTATGTAGTAG
TATGGATTGAATTAGGAAAGACCAATAATATGCGACTTTCTATCCCGGCA
TTtcgccttttctgaatttcaatcaatcacTGTCAAATGCCTGTCATCGG
GAGCATCATAGCGAAAGCTAATTGCTAGTTATAAAATATTATCATGCTAT
CATAGTTGAAGTAGTgaaaaattattgtttcaatCGGTATGTTTTTGTAG
GAGTAATCGAAATGTAGTTTCTCCATAACTTGGTATGTTGAATTCAAGTA
GAGTGCTCGACTTGCGCACAAATTTTATTATGAAGAATGATAAAACATTA
ACAACAAAACCAAGTTGCATATTATCATACAACGAATGTCATTGCAAAGA
ACGATAGAACCAGAGTCAGTATCATCACATAGTGTGGTCGTTGTGGTGGT
GTCAGTTGTTACTGTGGCATTGACAAATATTGTGTTATTGGTGGATGGTG
CATTGGTGGTGGTATGGGCGGTTGTGCTATTGGTGGATGGTGCATTGGTG
GTGATATGGGCGGTGGGGATATGGGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001382XLOC_001382Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002563-exon-sc0000020-1491911889:434416..435293TCONS_00002563-exon-sc0000020-1491911889:434416..435293Clytia hemisphaericaexon
TCONS_00002563-exon-sc0000020-1510915933:434416..435293TCONS_00002563-exon-sc0000020-1510915933:434416..435293Clytia hemisphaericaexon
TCONS_00002563-exon-sc0000020-1575043694:434416..435293TCONS_00002563-exon-sc0000020-1575043694:434416..435293Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:434416..435293 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1523	0.982558	1.38102	0.957329	1.78788	0.96071	1.97721	2.36167	2.05566	5.30681	5.64139	1.51284	27.4042	15.5667	9.78665	24.5922	6.09096	6.48786	1.69119	1.17981	1.30448	1.6161	0.42563	0.540525	0.854056	1.16874	7.60203	3.25939	3.94364	1.97899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top