TCONS_00002546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002546
Unique NameTCONS_00002546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002546 ID=TCONS_00002546|Name=TCONS_00002546|organism=Clytia hemisphaerica|type=transcript|length=351bp
ACGTAAGGGtaaattcattaaaatttggtctctctatgGGTCGGTTATCA
GAGTATCGGTCCGCACAAACCCTACATTCTCCACCCCTAGTGCCCTCCGG
GGGTTTTGTAGACGCTAATCATTCCTATGCAATCCTGTTATTATTGTAAA
TAtcgaaaaatagaaataagAAGGGAAAACTCAAGGAACCAACTTGTTAC
AACTCGACTTGGTGCATCTTGCTCAGGAAAGCGATGTAAATTCATTAGAT
GTTTGGATCGTCTAAAAGTTGCCATTATACTTCTTGTGGTACTAAGAGGT
GCCTACAGAGGTATGCAATTTGGTATTCGCATGTTTCAAGTCAACAGAAC
T
Run BLAST on NCBI

transcript from alignment at sc0000020:193796..194146

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002546 ID=TCONS_00002546|Name=TCONS_00002546|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at sc0000020:193796..194146 (Clytia hemisphaerica)
AGTTCTGTTGACTTGAAACATGCGAATACCAAATTGCATACCTCTGTAGG
CACCTCTTAGTACCACAAGAAGTATAATGGCAACTTTTAGACGATCCAAA
CATCTAATGAATTTACATCGCTTTCCTGAGCAAGATGCACCAAGTCGAGT
TGTAACAAGTTGGTTCCTTGAGTTTTCCCTTcttatttctatttttcgaT
ATTTACAATAATAACAGGATTGCATAGGAATGATTAGCGTCTACAAAACC
CCCGGAGGGCACTAGGGGTGGAGAATGTAGGGTTTGTGCGGACCGATACT
CTGATAACCGACCcatagagagaccaaattttaatgaatttaCCCTTACG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001365XLOC_001365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002546-exon-sc0000020-1491911889:193796..194146TCONS_00002546-exon-sc0000020-1491911889:193796..194146Clytia hemisphaericaexon
TCONS_00002546-exon-sc0000020-1510915933:193796..194146TCONS_00002546-exon-sc0000020-1510915933:193796..194146Clytia hemisphaericaexon
TCONS_00002546-exon-sc0000020-1575043694:193796..194146TCONS_00002546-exon-sc0000020-1575043694:193796..194146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:193796..194146 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.249843	0	0	0.276759	0	0	0	0	0	0	0	0	0.166163	0	0	0	0	0.576717	0	0	0.483125	1.41391	0	0.260438	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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