TCONS_00002545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002545
Unique NameTCONS_00002545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length194

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002545 ID=TCONS_00002545|Name=TCONS_00002545|organism=Clytia hemisphaerica|type=transcript|length=194bp
TTTTATGATATGAGCAACCAGTAAATCCAGTTTCCTTTTCTGCAACTATG
GATCGATCCAAAAATTTCGATAACGTGGTATACCTTGACAAAAACAAAGc
ataaaaaagttaaagaaatgttttcaaaatccGTTATAAGAcgatgattt
caaaaaaatatttcaagctgtgaaaaattcaataaaattatAAG
Run BLAST on NCBI

transcript from alignment at sc0000020:189771..189964

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002545 ID=TCONS_00002545|Name=TCONS_00002545|organism=Clytia hemisphaerica|type=transcript|length=194bp|location=Sequence derived from alignment at sc0000020:189771..189964 (Clytia hemisphaerica)
CTTataattttattgaatttttcacagcttgaaatatttttttgaaatca
tcgTCTTATAACggattttgaaaacatttctttaacttttttatgCTTTG
TTTTTGTCAAGGTATACCACGTTATCGAAATTTTTGGATCGATCCATAGT
TGCAGAAAAGGAAACTGGATTTACTGGTTGCTCATATCATAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001364XLOC_001364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002545-exon-sc0000020-1491911889:189771..189964TCONS_00002545-exon-sc0000020-1491911889:189771..189964Clytia hemisphaericaexon
TCONS_00002545-exon-sc0000020-1510915933:189771..189964TCONS_00002545-exon-sc0000020-1510915933:189771..189964Clytia hemisphaericaexon
TCONS_00002545-exon-sc0000020-1575043694:189771..189964TCONS_00002545-exon-sc0000020-1575043694:189771..189964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:189771..189964 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top