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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002541 ID=TCONS_00002541|Name=TCONS_00002541|organism=Clytia hemisphaerica|type=transcript|length=1423bp
GAATAAGGAGAAAATTGACAAGAAATTATTGTTGGCCTTGCAATCCAAGC
AGTTCCGATCAAAACATGAAGAATACTACTACTTTGAATTCGACTTTTTA
CACCAACGAAACTTATACAAAAGTATGTATAGCCGTATTAGATGACATAA
AAGACGCACCTGATCAAATCCGAAAAAACCTCGTTATCCCATTTATCGTT
TTCGGGGTAATCGGATTCATCCTCAATAGTATTGTTATTTGGGCTATAGT
CAAGACAAAGGAGTGGCGAAATCGGTCATCGAAGCTCAttctaattattt
cgatttACGATGTATTAAGTTCTATAGTGTCAAACACTTCGTCGGTTATT
TATATAGCGTATAGCGAGATGATCTCTTGTGCCGCTAAAATGACCATCAT
GACACCTGTCTTgtttttcgtattttcactCGGCTATTTCATTACCGTTA
TAGCCTTTGATCGCCTAATGAGAGTCGCTTTTCTACAAGACTACGAAGCA
AAATTTAGGACTTGGCATTATAACTTGGTAATTGTTATCCATTCATTAGT
GTCTATTATACAGACTGTTTTATGGGCTATTGGCGCCCTTGGTGGCCCCG
GCATGGCGTCGAATTTGACAGCGCCGGGAAACATCGTCATATTCTTGTTG
ACCATCATAATCTACATTGTTTCCATTACCAGGCTAAAGAAATTAAGGCg
atgtaatgaaaattttaatgagACTAGAAAGCTGACTAAAATGGCGTCTC
TGTATGTTATCACATATTTCGTATGCAACTTTCCTGTTTTGTTGTATGGC
TTCCTGATGCGATATGAGGTTAAGAGCTTAGAATTGTGGCAATTAAGTGT
ATTGACGTATCCTTTGTATTTAATTCCGAATATCAATGGTATTATCAATG
CCACTGCTTTCTTGGTGAAAAACAGGAAATGCAGAACATCGTTGCAAAGT
TATTTTCAAAGGCTGCCAACTCGAAGTCAAAGAGTGCGGGCGATTCGAAG
ACACAGCAAACCAGCAGACAGCAATGCTATCCATCTTAAACATGTTGGCC
AAtctaaagtcagttagggacattTGGCGAGTTTCTGTATGCAACCgcga
taaaaaaaaaaacgcttTCTATTGGAAGACCATTTTGGGCGTTTTGttgt
taccaccctcgaagcagtGGGCGCCTCTGTCTTTCTGCAACTCCGTCCAC
CaatttagatggccttaacaatagatccaaaaggacTCTTTCAGATGGGA
CATTTGAACTAGCTTAATCAACATTAGCACATCGGTGATTAAAAAACTGA
CTTTCAATCGCCttgttaatttctttttaaaggaAGACATTTTCGCGGAg
ttaaattttgcagattttgacaaattcgcgaaattaaattctgcgaaaca
CGATTATGctcaggatttaaaaa Run BLAST on NCBI protein sequence of TCONS_00002541-protein >TCONS_00002541-protein ID=TCONS_00002541-protein|Name=TCONS_00002541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
IRRKLTRNYCWPCNPSSSDQNMKNTTTLNSTFYTNETYTKVCIAVLDDIK
DAPDQIRKNLVIPFIVFGVIGFILNSIVIWAIVKTKEWRNRSSKLILIIS
IYDVLSSIVSNTSSVIYIAYSEMISCAAKMTIMTPVLFFVFSLGYFITVI
AFDRLMRVAFLQDYEAKFRTWHYNLVIVIHSLVSIIQTVLWAIGALGGPG
MASNLTAPGNIVIFLLTIIIYIVSITRLKKLRRCNENFNETRKLTKMASL
YVITYFVCNFPVLLYGFLMRYEVKSLELWQLSVLTYPLYLIPNINGIINA
TAFLVKNRKCRTSLQSYFQRLPTRSQRVRAIRRHSKPADSNAIHLKHVGQ
SKVS Run BLAST on NCBI transcript from alignment at sc0000020:68919..70341 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002541 ID=TCONS_00002541|Name=TCONS_00002541|organism=Clytia hemisphaerica|type=transcript|length=1423bp|location=Sequence derived from alignment at sc0000020:68919..70341 (Clytia hemisphaerica)
tttttaaatcctgagCATAATCGtgtttcgcagaatttaatttcgcgaat
ttgtcaaaatctgcaaaatttaacTCCGCGAAAATGTCTtcctttaaaaa
gaaattaacaaGGCGATTGAAAGTCAGTTTTTTAATCACCGATGTGCTAA
TGTTGATTAAGCTAGTTCAAATGTCCCATCTGAAAGAgtccttttggatc
tattgttaaggccatctaaattGGTGGACGGAGTTGCAGAAAGACAGAGG
CGCCCactgcttcgagggtggtaacaaCAAAACGCCCAAAATGGTCTTCC
AATAGAaagcgtttttttttttatcgcGGTTGCATACAGAAACTCGCCAa
atgtccctaactgactttagaTTGGCCAACATGTTTAAGATGGATAGCAT
TGCTGTCTGCTGGTTTGCTGTGTCTTCGAATCGCCCGCACTCTTTGACTT
CGAGTTGGCAGCCTTTGAAAATAACTTTGCAACGATGTTCTGCATTTCCT
GTTTTTCACCAAGAAAGCAGTGGCATTGATAATACCATTGATATTCGGAA
TTAAATACAAAGGATACGTCAATACACTTAATTGCCACAATTCTAAGCTC
TTAACCTCATATCGCATCAGGAAGCCATACAACAAAACAGGAAAGTTGCA
TACGAAATATGTGATAACATACAGAGACGCCATTTTAGTCAGCTTTCTAG
TctcattaaaattttcattacatcGCCTTAATTTCTTTAGCCTGGTAATG
GAAACAATGTAGATTATGATGGTCAACAAGAATATGACGATGTTTCCCGG
CGCTGTCAAATTCGACGCCATGCCGGGGCCACCAAGGGCGCCAATAGCCC
ATAAAACAGTCTGTATAATAGACACTAATGAATGGATAACAATTACCAAG
TTATAATGCCAAGTCCTAAATTTTGCTTCGTAGTCTTGTAGAAAAGCGAC
TCTCATTAGGCGATCAAAGGCTATAACGGTAATGAAATAGCCGagtgaaa
atacgaaaaacAAGACAGGTGTCATGATGGTCATTTTAGCGGCACAAGAG
ATCATCTCGCTATACGCTATATAAATAACCGACGAAGTGTTTGACACTAT
AGAACTTAATACATCGTaaatcgaaataattagaaTGAGCTTCGATGACC
GATTTCGCCACTCCTTTGTCTTGACTATAGCCCAAATAACAATACTATTG
AGGATGAATCCGATTACCCCGAAAACGATAAATGGGATAACGAGGTTTTT
TCGGATTTGATCAGGTGCGTCTTTTATGTCATCTAATACGGCTATACATA
CTTTTGTATAAGTTTCGTTGGTGTAAAAAGTCGAATTCAAAGTAGTAGTA
TTCTTCATGTTTTGATCGGAACTGCTTGGATTGCAAGGCCAACAATAATT
TCTTGTCAATTTTCTCCTTATTC Coding sequence (CDS) from alignment at sc0000020:68919..70341 >TCONS_00002541 ID=TCONS_00002541|Name=TCONS_00002541|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at sc0000020:68919..70341 (Clytia hemisphaerica)
ctaactgactttagaTTGGCCAACATGTTTAAGATGGATAGCATTGCTGT
CTGCTGGTTTGCTGTGTCTTCGAATCGCCCGCACTCTTTGACTTCGAGTT
GGCAGCCTTTGAAAATAACTTTGCAACGATGTTCTGCATTTCCTGTTTTT
CACCAAGAAAGCAGTGGCATTGATAATACCATTGATATTCGGAATTAAAT
ACAAAGGATACGTCAATACACTTAATTGCCACAATTCTAAGCTCTTAACC
TCATATCGCATCAGGAAGCCATACAACAAAACAGGAAAGTTGCATACGAA
ATATGTGATAACATACAGAGACGCCATTTTAGTCAGCTTTCTAGTctcat
taaaattttcattacatcGCCTTAATTTCTTTAGCCTGGTAATGGAAACA
ATGTAGATTATGATGGTCAACAAGAATATGACGATGTTTCCCGGCGCTGT
CAAATTCGACGCCATGCCGGGGCCACCAAGGGCGCCAATAGCCCATAAAA
CAGTCTGTATAATAGACACTAATGAATGGATAACAATTACCAAGTTATAA
TGCCAAGTCCTAAATTTTGCTTCGTAGTCTTGTAGAAAAGCGACTCTCAT
TAGGCGATCAAAGGCTATAACGGTAATGAAATAGCCGagtgaaaatacga
aaaacAAGACAGGTGTCATGATGGTCATTTTAGCGGCACAAGAGATCATC
TCGCTATACGCTATATAAATAACCGACGAAGTGTTTGACACTATAGAACT
TAATACATCGTaaatcgaaataattagaaTGAGCTTCGATGACCGATTTC
GCCACTCCTTTGTCTTGACTATAGCCCAAATAACAATACTATTGAGGATG
AATCCGATTACCCCGAAAACGATAAATGGGATAACGAGGTTTTTTCGGAT
TTGATCAGGTGCGTCTTTTATGTCATCTAATACGGCTATACATACTTTTG
TATAAGTTTCGTTGGTGTAAAAAGTCGAATTCAAAGTAGTAGTATTCTTC
ATGTTTTGATCGGAACTGCTTGGATTGCAAGGCCAACAATAATTTCTTGT
CAATTTTCTCCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002541-exon-sc0000020-1491911889:68919..70341 | TCONS_00002541-exon-sc0000020-1491911889:68919..70341 | Clytia hemisphaerica | exon |
| TCONS_00002541-exon-sc0000020-1510915933:68919..70341 | TCONS_00002541-exon-sc0000020-1510915933:68919..70341 | Clytia hemisphaerica | exon |
| TCONS_00002541-exon-sc0000020-1575043694:68919..70341 | TCONS_00002541-exon-sc0000020-1575043694:68919..70341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:68919..70341 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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