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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002534 ID=TCONS_00002534|Name=TCONS_00002534|organism=Clytia hemisphaerica|type=transcript|length=681bp
CAGACGTCAAAAAGCTAGAAGGAGTCGCCCAAGGATGCTCGTTTACATAC
TTCCTGAAAAACAAGTCAGATGCATTGCAAGCAACCGAGAAATTCTTAGC
GGATACCAACCCATTTGGTAATGTtaaaactttcaactttcatacTGAAT
TTCTACCCACAGGAGATACCGATCGTCTACGTAGTGGCAATGGGGGAGAG
TATATATCAGCTGAATTCAAAGCACTTTTGTTAAAGTACAATATCAAACA
TGAATTGACATCGCCCTACTCGCCACACCAAAATGGGACAGCAGAACGAA
ACTGGAGAACACTTTTCGAGATGGCACGATCTTTGTTAATCGAAGCCAAC
CTACCAAAGTCACTATGGACTTACGCTGTCCTAACCGCCACACATATTCG
AAACCGTTGCTATGTGCAAAGATTGAAAACTACACCGTACAGCGTAATCA
CTGGAAGGAAACCCGACATCTCGAAGATGCATCTATTCGGAAGTGTTTGC
TACCCTCTCATCCATGACCCAAAGAAACTAGACCCTCGATGCAAAAAGGG
TTATTTTGTTGGGTACGATCGTGACAGCCCATCATACCTCGTCTATCACC
CAGACAAACGTACTGTCATGAAATATCGACTCGTAAAGTTCACCGATAAA
TTTGAAACTAAACCGGAATCAGATCTACTCT Run BLAST on NCBI protein sequence of TCONS_00002534-protein >TCONS_00002534-protein ID=TCONS_00002534-protein|Name=TCONS_00002534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
DVKKLEGVAQGCSFTYFLKNKSDALQATEKFLADTNPFGNVKTFNFHTEF
LPTGDTDRLRSGNGGEYISAEFKALLLKYNIKHELTSPYSPHQNGTAERN
WRTLFEMARSLLIEANLPKSLWTYAVLTATHIRNRCYVQRLKTTPYSVIT
GRKPDISKMHLFGSVCYPLIHDPKKLDPRCKKGYFVGYDRDSPSYLVYHP
DKRTVMKYRLVKFTDKFETKPESDLL Run BLAST on NCBI transcript from alignment at sc0000020:1000145..1001110- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002534 ID=TCONS_00002534|Name=TCONS_00002534|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at sc0000020:1000145..1001110- (Clytia hemisphaerica)
CAGACGTCAAAAAGCTAGAAGGAGTCGCCCAAGGTATGAACATTTCAGAT
AAAAGTGACTTTGATTGTGAAACATGTATTCTCGCCAAACAGACCAACAC
TCGTAACCGAGATGCTGACATCCGAGCTACCAAACCCTTCGAATTAGTCC
ACACTGACCTTGCTGGTCCTGTCGATCCTGTAGCTAAAGATGGCCACCGC
TATGCTATCATTTTTNCCAAACCCTTCGAATTAGTCCACACTGACCTTGC
TGGTCCTGTCGATCCTGTAGCTAAAGATGGCCACCGCTATGCTATGATTT
TCGTTGACGATTTTTCAGGATGCTCGTTTACATACTTCCTGAAAAACAAG
TCAGATGCATTGCAAGCAACCGAGAAATTCTTAGCGGATACCAACCCATT
TGGTAATGTTAAAACTTTCAACTTTCATACTGAATTTCTACCCACAGGAG
ATACCGATCGTCTACGTAGTGGCAATGGGGGAGAGTATATATCAGCTGAA
TTCAAAGCACTTTTGTTAAAGTACAATATCAAACATGAATTGACATCGCC
CTACTCGCCACACCAAAATGGGACAGCAGAACGAAACTGGAGAACACTTT
TCGAGATGGCACGATCTTTGTTAATCGAAGCCAACCTACCAAAGTCACTA
TGGACTTACGCTGTCCTAACCGCCACACATATTCGAAACCGTTGCTATGT
GCAAAGATTGAAAACTACACCGTACAGCGTAATCACTGGAAGGAAACCCG
ACATCTCGAAGATGCATCTATTCGGAAGTGTTTGCTACCCTCTCATCCAT
GACCCAAAGAAACTAGACCCTCGATGCAAAAAGGGTTATTTTGTTGGGTA
CGATCGTGACAGCCCATCATACCTCGTCTATCACCCAGACAAACGTACTG
TCATGAAATATCGACTCGTAAAGTTCACCGATAAATTTGAAACTAAACCG
GAATCAGATCTACTCT Coding sequence (CDS) from alignment at sc0000020:1000145..1001110- >TCONS_00002534 ID=TCONS_00002534|Name=TCONS_00002534|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at sc0000020:1000145..1001110- (Clytia hemisphaerica)
GATGCTCGTTTACATACTTCCTGAAAAACAAGTCAGATGCATTGCAAGCA
ACCGAGAAATTCTTAGCGGATACCAACCCATTTGGTAATGTTAAAACTTT
CAACTTTCATACTGAATTTCTACCCACAGGAGATACCGATCGTCTACGTA
GTGGCAATGGGGGAGAGTATATATCAGCTGAATTCAAAGCACTTTTGTTA
AAGTACAATATCAAACATGAATTGACATCGCCCTACTCGCCACACCAAAA
TGGGACAGCAGAACGAAACTGGAGAACACTTTTCGAGATGGCACGATCTT
TGTTAATCGAAGCCAACCTACCAAAGTCACTATGGACTTACGCTGTCCTA
ACCGCCACACATATTCGAAACCGTTGCTATGTGCAAAGATTGAAAACTAC
ACCGTACAGCGTAATCACTGGAAGGAAACCCGACATCTCGAAGATGCATC
TATTCGGAAGTGTTTGCTACCCTCTCATCCATGACCCAAAGAAACTAGAC
CCTCGATGCAAAAAGGGTTATTTTGTTGGGTACGATCGTGACAGCCCATC
ATACCTCGTCTATCACCCAGACAAACGTACTGTCATGAAATATCGACTCG
TAAAGTTCACCGATAAATTTGAAACTAAACCGGAATCAGATCTACTCGAC
GTCAAAAAGCTAGAAGGAGTCGCCCAAGGATGCTCGTTTACATACTTCCT
GAAAAACAAGTCAGATGCATTGCAAGCAACCGAGAAATTCTTAGCGGATA
CCAACCCATTTGGTAATGTTAAAACTTTCAACTTTCATACTGAATTTCTA
CCCACAGGAGATACCGATCGTCTACGTAGTGGCAATGGGGGAGAGTATAT
ATCAGCTGAATTCAAAGCACTTTTGTTAAAGTACAATATCAAACATGAAT
TGACATCGCCCTACTCGCCACACCAAAATGGGACAGCAGAACGAAACTGG
AGAACACTTTTCGAGATGGCACGATCTTTGTTAATCGAAGCCAACCTACC
AAAGTCACTATGGACTTACGCTGTCCTAACCGCCACACATATTCGAAACC
GTTGCTATGTGCAAAGATTGAAAACTACACCGTACAGCGTAATCACTGGA
AGGAAACCCGACATCTCGAAGATGCATCTATTCGGAAGTGTTTGCTACCC
TCTCATCCATGACCCAAAGAAACTAGACCCTCGATGCAAAAAGGGTTATT
TTGTTGGGTACGATCGTGACAGCCCATCATACCTCGTCTATCACCCAGAC
AAACGTACTGTCATGAAATATCGACTCGTAAAGTTCACCGATAAATTTGA
AACTAAACCGGAATCAGATCTACTCGACGTCAAAAAGCTAGAAGGAGTCG
CCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002534-exon-sc0000020-1575043694:1001078..1001110 | TCONS_00002534-exon-sc0000020-1575043694:1001078..1001110 | Clytia hemisphaerica | exon |
| TCONS_00002534-exon-sc0000020-1575043694:1000145..1000792 | TCONS_00002534-exon-sc0000020-1575043694:1000145..1000792 | Clytia hemisphaerica | exon |
| TCONS_00002534-exon-sc0000020-1510915933:1001078..1001110 | TCONS_00002534-exon-sc0000020-1510915933:1001078..1001110 | Clytia hemisphaerica | exon |
| TCONS_00002534-exon-sc0000020-1510915933:1000145..1000792 | TCONS_00002534-exon-sc0000020-1510915933:1000145..1000792 | Clytia hemisphaerica | exon |
| TCONS_00002534-exon-sc0000020-1491911889:1001078..1001110 | TCONS_00002534-exon-sc0000020-1491911889:1001078..1001110 | Clytia hemisphaerica | exon |
| TCONS_00002534-exon-sc0000020-1491911889:1000145..1000792 | TCONS_00002534-exon-sc0000020-1491911889:1000145..1000792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:1000145..1001110 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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