TCONS_00002530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002530
Unique NameTCONS_00002530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002530 ID=TCONS_00002530|Name=TCONS_00002530|organism=Clytia hemisphaerica|type=transcript|length=2492bp
cgtctttgtgtgTTTTAAGGGGTATATTTTACCGAACCGGCTGAGTTGGT
CTTACGCTCTTTTTGTGTCTAACTCGAAAAAAGAAGGAGAGTCAAAGAGT
CTTACAGTcttagaacaaatttgtgtgaTGGCATTGAACACAAAATGGCT
TCCAAAGTGAAAGCACAAAGAACATGCACTTTGTGCAAGAATGATAATAG
AAATAAGAATGATTTCAACTGCATCTCACAGCCACTAAAGGAAGATTTGT
CTGCATTTTGCTGGATTTTACAGAAGAAAATGCCAAAAGACTTTGCTTCC
GACGACAGTTGCAGAATCTGCAACAAgtgcaaaaagaaaattgttagGGT
AGGTAGTAGCATTCattataaaattgaattttattgTACTTTATTGAAGC
CTTGTTTGAAACATAATCCTAAACAAACGCGAGTTTAATTTGATGGAAAT
TCGATGCCTTTTACCTAAATTTTGTTTGGAATTATAAAACAATactcaaa
tttctaaaagtttGTTTGTCATTTGTTTATTGACTTCTTCAAACGCCATT
GATTGATGTGCTTTTAACATGCAAGCAGCGAAATCATAGTGATTGCCAAG
AGCAGAATTGCATAAAAGCTGTTGCAAGTTAAGTCCGTATTGCAAGTTAA
GTCCGTATTGCAAGTTATGGCAGTTCAGGTTAATtccttttattctttta
ttttatattttacttgCTTATTTTTTACAATACAGATGAAAAAGAACATG
ACCAAGCTCAAAGTTGAGATACAAGATTTCTTGTCAAAAATGGAACTATT
AACTGATACAGAAACTTTAGACAGCTCAAGAAACATCAGTAACATTAACA
GACTGACAAGTGACAGGCAGACATTTAATGCAGAGACAAGTGACACGAAG
ACATTTAACACAGGGACAAGTGACAGGCAGACATTTAACACAGAGACAAG
TGATAGGCAGACGTTTAACGCAGAGACAAGTGACAGGCAGACGTTTAACA
CAGAGACAAGTGACAGACAGACAAGTGACACAAAAACAATTGACATGGAC
ACTTTGGACAAAGTAAGTACAAGTAATCTCGAGACAAGTAACGAACAGAC
AATTGACATGGTTATAAATGACGATAGACTTTTGAATGACAAAGAAACAA
GTGACACACATCAAAATGACACACAGACAAATAATGGACAGACAACTGTT
GAACCAGCAAGTGATGCCCAAACAAGTAATGGTGGAAATGAGTCAGTTCT
GGAgatgaaaaaatgtaaaactcCGAAGGCATTCATACATGTTCATTGGC
CTTCTGGTGAACGCAATCGTGAGGTAATAGTCACCTTGGGTCAATAATGG
GACAGGAcagtaaaaatcatttgtgaCAGCCTCATATATCATGTTATTGT
TACATATATTAACGTTGAgacaaaaagtcttttttaaagTTCTAATTTGA
TTTATTATCACATACTAcagtatttcaattttatttcaatttaattCAAT
TCTAGATCAAATCCGACCTAAACCCCTTAGCTGTCTGTCTTTTGAGAGGG
ACTTACAGTGACATTGCTAAAAAGTGTTGGAAACACGAGGTCTTAAagaa
agagattttcaaactggTGCAAAAAGATATCGACAATGAAACAGTGATGA
TTTGCAAGAAAAAGaaaattgttgaTGGGAAGAAAACTGTTTCACCGAGC
ATTCTCCAAAAAACTTCCAAGGAAGATATGATGaacttttcattggataa
agtGATGGCTGAATTAAAACAATTCTTTCCGATGCTGAGCTCCATTCTAA
TAACAGTTGCAAAGAAAACGAAAGCCAGCATTCAAGTTGACAATAGCAAT
CATTACAAAGTCATCAATACAATTTGCATGGCAGCCTCGATTCTTCTTAA
AAACCGTTTTGCCAAAATGACATCATTGCAGCTTTATGTCTCTCTCATCA
TCAACCATTCATCATACACATCGTCAATGAAACGTTTGCAGGCACTTCGA
CTTGTTGTTTCCACACAATTTCTAAACAAAGTCATGGATTTGTTTGGAAA
AGACCACGACCAGCCTTTGAAGGATGCAAAGGCATATCTTGAAGATAGAC
TGAAAACAGAAAATGAGCCAATTGCTGTACCGATTCCTGAATTTAACACT
TCAATTGCCGGACAACTTCAGGACAAAGTGATTCCAAATACCAATGACAG
TGATAGATGGAGGAAATACAATCCCATTGATGATATCACaccaacaattt
ttttgaaccatatattttttattttggatttAATATGGTAGAAAATGAGT
GCAGTAAGGGGTTTCCTAATGGGacttgcaattttttaaactattcaatt
tttcgttcttaAATAAACAACAGTctaaaaaaactcattttcggATACCC
TACTGCTGAACTTCCTTGATttaagtttaaagttttttttaaatgccaAT
TTTTTCAGGTCCTAAAAGCAAAGTATTAGAAAGAGGACCAGA
Run BLAST on NCBI

transcript from alignment at sc0000020:865365..868452-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002530 ID=TCONS_00002530|Name=TCONS_00002530|organism=Clytia hemisphaerica|type=transcript|length=3088bp|location=Sequence derived from alignment at sc0000020:865365..868452- (Clytia hemisphaerica)
CGTCTTTGTGTGTTTTAAGGGGTATATTTTACCGAACCGGCTGAGTTGGT
CTTACGCTCTTTTTGTGTCTAACTCGAAAAAAGAAGGAGAGTCAAAGAGT
CTTACAGTCTTAGAACAAATTTGTGTGATGGCATTGAACACAAAATGGCT
TCCAAAGTGAAAGCACAAAGAACATGCACTTTGTGCAAGAATGATAATAG
AAATAAGAATGATTTCAACTGCATCTCACAGCCACTAAAGGAAGATTTGT
CTGCATTTTGCTGGATTTTACAGAAGAAAATGCCAAAAGACTTTGCTTCC
GACGACAGTTGCAGAATCTGCAACAAGTGCAAAAAGAAAATTGTTAGGGT
AGGTAGTAGCATTCATTATAAAATTGAATTTTATTGTACTTTATTGAAGC
CTTGTTTGAAACATAATCCTAAACAAACGCGAGTTTAATTTGATGGAAAT
TCGATGCCTTTTACCTAAATTTTGTTTGGAATTATAAAACAATACTCAAA
TTTCTAAAAGTTTGTTTGTCATTTGTTTATTGACTTCTTCAAACGCCATT
GATTGATGTGCTTTTAACATGCAAGCAGCGAAATCATAGTGATTGCCAAG
AGCAGAATTGCATAAAAGCTGTTGCAAGTTAAGTCCGTATTGCAAGTTAA
GTCCGTATTGCAAGTTATGGCAGTTCAGGTTAATTCCTTTTATTCTTTTA
TTTTATATTTTACTTGCTTATTTTTTACAATACAGATGAAAAAGAACATG
ACCAAGCTCAAAGTTGAGATACAAGATTTCTTGTCAAAAATGGAACTATT
AACTGATACAGAAACTTTAGACAGCTCAAGAAACATCAGTAACATTAACA
GACTGACAAGTGACAGGCAGACATTTAATGCAGAGACAAGTGACACGAAG
ACATTTAACACAGGGACAAGTGACAGGCAGACATTTAACACAGAGACAAG
TGATAGGCAGACGTTTAACGCAGAGACAAGTGACAGGCAGACGTTTAACA
CAGAGACAAGTGACAGGCAGACGTTTAACACAGAGACAAGTGACAGACAG
ACAAGTGACACAAAAACAATTGACATGGACACTTTGGACAAAGTAAGTAC
AAGTAATCTCGAGACAAGTAACGAACAGACAATTGACATGGTTATAAATG
ACGATAGACTTTTGAATGACAAAGAAACAAGTGACACACATCAAAATGAC
ACACAGACAAATAATGGACAGACAACTGTTGAACCAGCAAGTGATGCCCA
AACAAGTAATGGTGGAAATGAGTCAGTTCTGGAGATGAAAAAATGTAAAA
CTCCGAAGGCATTCATACATGTTCATTGGCCTTCTGGTGAACGCAATCGT
GAGGTAATAGTCACCTTGGGTCAATAATGGGACAGGACAGTAAAAATCAT
TTGTGACAGCCTCATATATCATGTTATTGTTACATATATTAACGTTGAGA
CAAAAAGTCTTTTTTAAAGTTCTAATTTGATTTATTATCACATACTACAG
TATTTCAATTTTATTTCAATTTAATTCAATTCTAGATCAAATCCGACCTA
AACCCCTTAGCTGTCTGTCTTTTGAGAGGGACTTACAGTGACATTGCTAA
AAAGTGTTGGAAACACGAGGTCTTAAAGAAAGAGATTTTCAAACTGGTGC
AAAAAGATATCGACAATGAAACAGTGATGATTTGCAAGAAAAAGGTATTT
AACTGGGTGCATGTCACTAGTCCAACACTTTCTAGTCCAACAGTAAAATA
GTCCGAATCTATTTTAAAATAAATTTACAATTTAGAAGTCTTTTTTTCTG
ACGTCACTTTTGTCAGAAAACAAAAGATTTTAGAATGTTGAATAAGGGTT
TTTCATTGAGATAATATTAATAAAAGTTCATTATGGTGGCATTTTGACAT
AATTAGAAATAAAGGACCAATCAAATTTGCTTTATTTGGACCTGTTTGGA
CCATTAAAAAGATCACTTATAGCAAAAAGCTATTCTATAAAAACTTTATT
GCTAAGAAAAATAAATAAATCTCATTAAATTTGAAAGGTTGAGCTTCACT
GGTATTCTGAACTTTTTAAGAAAATTGTTGATGGGAAGAAAACTGTTTCA
CCGAGCATTCTCCAAAAAACTTCCAAGGAAGATATGATGAACTTTTCATT
GGATAAAGTGATGGCTGAATTAAAACAATTCTTTCCGATGCTGAGCTCCA
TTCTAATAACAGTTGCAAAGAAAACGAAAGCCAGCATTCAAGTTGACAAT
AGCAATCATTACAAAGTCATCAATACAATTTGCATGGCAGCCTCGATTCT
TCTTAAAAACCGTTTTGCCAAAATGACATCATTGCAGCTTTATGTCTCTC
TCATCATCAACCATTCATCATACACAGTTTGTATTATTTATTTTTGAAAA
TTATTCTGCTCTGTTCTATTAGTTTTTTGGCTCTGAAGAGAACGTTTGAA
AACTATAAAAACTATTTTACTTCTGCATTAATAGATTTCATATATGATCG
CAAACAATACCCTCTACAGGATAATCTTACAATTCTAATTCTCCAATTCT
ATTTTCTTATGTCTAGTCGTCAATGAAACGTTTGCAGGCACTTCGACTTG
TTGTTTCCACACAATTTCTAAACAAAGTCATGGATTTGTTTGGAAAAGAC
CACGACCAGCCTTTGAAGGATGCAAAGGCATATCTTGAAGATAGACTGAA
AACAGAAAATGAGCCAATTGCTGTACCGATTCCTGAATTTAACACTTCAA
TTGCCGGACAACTTCAGGACAAAGTGATTCCAAATACCAATGACAGTGAT
AGATGGAGGAAATACAATCCCATTGATGATATCACACCAACAATTTTTTT
GAACCATATATTTTTTATTTTGGATTTAATATGGTAGAAAATGAGTGCAG
TAAGGGGTTTCCTAATGGGACTTGCAATTTTTTAAACTATTCAATTTTTC
GTTCTTAAATAAACAACAGTCTAAAAAAACTCATTTTCGGATACCCTACT
GCTGAACTTCCTTGATTTAAGTTTAAAGTTTTTTTTAAATGCCAATTTTT
TCAGGTCCTAAAAGCAAAGTATTAGAAAGAGGACCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001352XLOC_001352Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002530-exon-sc0000020-1575043694:867437..868452TCONS_00002530-exon-sc0000020-1575043694:867437..868452Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1575043694:866759..867406TCONS_00002530-exon-sc0000020-1575043694:866759..867406Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1575043694:866077..866382TCONS_00002530-exon-sc0000020-1575043694:866077..866382Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1575043694:865365..865886TCONS_00002530-exon-sc0000020-1575043694:865365..865886Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1510915933:867437..868452TCONS_00002530-exon-sc0000020-1510915933:867437..868452Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1510915933:866759..867406TCONS_00002530-exon-sc0000020-1510915933:866759..867406Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1510915933:866077..866382TCONS_00002530-exon-sc0000020-1510915933:866077..866382Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1510915933:865365..865886TCONS_00002530-exon-sc0000020-1510915933:865365..865886Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1491911889:867437..868452TCONS_00002530-exon-sc0000020-1491911889:867437..868452Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1491911889:866759..867406TCONS_00002530-exon-sc0000020-1491911889:866759..867406Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1491911889:866077..866382TCONS_00002530-exon-sc0000020-1491911889:866077..866382Clytia hemisphaericaexon
TCONS_00002530-exon-sc0000020-1491911889:865365..865886TCONS_00002530-exon-sc0000020-1491911889:865365..865886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:865365..868452 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.82992	0.873131	0.541368	0.468229	0.739643	0.402627	0.700752	0.920804	0.678324	0.355607	0.719038	1.73847	1.68433	1.91754	3.47736	3.28408	1.80937	4.22605	2.25644	2.11829	2.54895	2.67245	0.950882	1.47218	0	0	1.03389	0.669648	1.0384	0.644108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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